Wall clock time and date at job start Tue Mar 31 2020 13:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47289 * 2 1 4 4 H 1.08999 * 109.47011 * 306.02157 * 3 2 1 5 5 C 1.53000 * 109.47261 * 186.02107 * 3 2 1 6 6 O 1.42893 * 109.47260 * 64.98450 * 5 3 2 7 7 C 1.50697 * 109.47102 * 66.02022 * 3 2 1 8 8 N 1.30290 * 126.35144 * 59.97188 * 7 3 2 9 9 N 1.28529 * 110.05898 * 180.02562 * 8 7 3 10 10 C 1.31219 * 109.85624 * 359.97438 * 9 8 7 11 11 N 1.38579 * 126.47190 * 179.97438 * 10 9 8 12 12 C 1.46964 * 110.99774 * 0.02978 * 11 10 9 13 13 C 1.53049 * 109.36268 * 183.18523 * 12 11 10 14 14 N 1.46954 * 109.36729 * 301.59982 * 13 12 11 15 15 C 1.46904 * 111.00037 * 183.18733 * 14 13 12 16 16 C 1.50702 * 109.47017 * 170.00216 * 15 14 13 17 17 H 1.08001 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00353 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99683 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47047 * 119.99682 * 20 18 16 23 23 H 1.48499 * 109.47176 * 239.99662 * 20 18 16 24 24 C 1.46964 * 110.88073 * 59.32077 * 14 13 12 25 25 C 1.46956 * 111.00049 * 123.82447 * 11 10 9 26 26 N 1.36450 * 107.05533 * 0.23306 * 10 9 8 27 27 C 1.46500 * 127.13470 * 179.77778 * 26 10 9 28 28 H 1.09001 * 109.47334 * 54.74420 * 1 2 3 29 29 H 1.09001 * 109.47319 * 174.75218 * 1 2 3 30 30 H 1.09006 * 109.47090 * 294.74313 * 1 2 3 31 31 H 1.09005 * 109.47007 * 239.99911 * 2 1 3 32 32 H 1.08996 * 109.47450 * 120.00004 * 2 1 3 33 33 H 1.08999 * 109.46788 * 184.98824 * 5 3 2 34 34 H 1.09002 * 109.46808 * 304.98106 * 5 3 2 35 35 H 0.96706 * 114.00052 * 180.02562 * 6 5 3 36 36 H 1.08996 * 109.48977 * 63.21771 * 12 11 10 37 37 H 1.08999 * 109.50672 * 303.16439 * 12 11 10 38 38 H 1.09001 * 109.49192 * 181.62502 * 13 12 11 39 39 H 1.09002 * 109.48804 * 61.56915 * 13 12 11 40 40 H 1.08999 * 109.46905 * 289.99629 * 15 14 13 41 41 H 1.08994 * 109.47016 * 49.99901 * 15 14 13 42 42 H 0.96994 * 119.99967 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.48560 * 60.64635 * 24 14 13 44 44 H 1.09000 * 109.48808 * 180.71452 * 24 14 13 45 45 H 1.09002 * 109.49314 * 296.78400 * 25 11 10 46 46 H 1.09005 * 109.48435 * 56.82452 * 25 11 10 47 47 H 1.08995 * 109.47685 * 90.02218 * 27 26 10 48 48 H 1.09010 * 109.46512 * 210.02167 * 27 26 10 49 49 H 1.08995 * 109.46807 * 330.01144 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 3.5625 1.4451 -0.1513 6 8 3.9148 0.9193 -1.4324 7 6 1.6631 2.1086 1.2982 8 7 2.0204 1.7301 2.4926 9 7 1.5222 2.5224 3.3735 10 6 0.8149 3.4569 2.7833 11 7 0.1282 4.4870 3.4060 12 6 0.2849 4.4177 4.8656 13 6 -0.5506 5.5214 5.5186 14 7 -0.1165 6.8287 5.0067 15 6 -0.8445 7.9207 5.6667 16 6 -0.2104 9.2387 5.3034 17 1 0.6478 9.2627 4.6482 18 6 -0.7253 10.4138 5.8085 19 7 -1.7700 10.3845 6.6068 20 14 0.0611 12.0475 5.3588 21 1 1.2137 11.8094 4.4534 22 1 -0.9382 12.9058 4.6734 23 1 0.5332 12.7259 6.5925 24 6 -0.2732 6.8980 3.5470 25 6 0.5623 5.7943 2.8941 26 7 0.8785 3.2194 1.4412 27 6 0.2409 3.9952 0.3745 28 1 -0.3634 0.5932 -0.8392 29 1 -0.3634 -1.0234 -0.0940 30 1 -0.3633 0.4302 0.9334 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9346 2.4658 -0.0626 34 1 4.0063 0.8275 0.6296 35 1 4.8672 0.8908 -1.5975 36 1 1.3345 4.5542 5.1255 37 1 -0.0546 3.4453 5.2223 38 1 -0.4133 5.4902 6.5994 39 1 -1.6035 5.3692 5.2810 40 1 -1.8839 7.9149 5.3385 41 1 -0.8038 7.7834 6.7472 42 1 -2.1324 11.2112 6.9618 43 1 -1.3229 6.7614 3.2872 44 1 0.0666 7.8704 3.1906 45 1 1.6152 5.9465 3.1316 46 1 0.4253 5.8254 1.8132 47 1 0.9176 4.7830 0.0438 48 1 0.0104 3.3383 -0.4643 49 1 -0.6799 4.4411 0.7504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772160420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:20 Heat of formation + Delta-G solvation = 42.351040 kcal Electronic energy + Delta-G solvation = -28304.760474 eV Core-core repulsion = 24496.495205 eV Total energy + Delta-G solvation = -3808.265269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -43.09638 -39.03839 -37.91117 -35.54679 -35.40523 -34.48449 -32.54926 -30.73294 -30.49835 -28.98395 -27.81241 -27.28576 -25.12939 -24.13618 -23.50147 -22.59621 -21.88047 -21.17432 -20.01300 -19.27592 -18.05025 -17.23579 -16.60099 -16.41947 -16.29821 -15.40080 -15.07197 -14.98731 -14.75835 -14.54205 -14.41959 -14.28157 -13.68430 -13.60174 -13.54207 -13.24514 -13.16497 -12.95136 -12.47169 -12.18744 -11.92756 -11.67489 -11.46790 -11.40375 -11.25650 -11.13795 -11.05025 -10.91731 -10.86861 -10.63653 -10.51706 -10.40206 -10.34070 -10.21823 -9.87727 -9.76706 -9.24070 -8.50569 -8.17701 -7.37536 -6.09111 -4.11119 1.66752 2.10774 2.78553 3.26132 3.34087 3.37816 3.62885 3.74680 4.13864 4.35955 4.40554 4.42372 4.68712 4.74181 4.77727 4.83538 4.90642 5.01333 5.08315 5.11653 5.13384 5.26323 5.26588 5.31407 5.34646 5.53632 5.54904 5.58724 5.65280 5.72431 5.75150 5.78363 5.91874 5.92390 6.03561 6.09640 6.31192 6.38927 6.44271 6.50829 6.75527 7.17854 7.19997 7.20156 7.25607 7.71221 7.98078 8.08513 8.44200 8.75614 8.96219 9.53568 11.01706 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.002541 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.606000 B =11016.802267 C =11510.525335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.009 3.991 4 H 0.090 0.910 5 C 0.088 3.912 6 O -0.572 6.572 7 C 0.170 3.830 8 N -0.274 5.274 9 N -0.325 5.325 10 C 0.375 3.625 11 N -0.453 5.453 12 C 0.079 3.921 13 C 0.054 3.946 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.069 3.931 25 C 0.055 3.945 26 N -0.483 5.483 27 C 0.072 3.928 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.384 0.616 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.034 0.966 40 H -0.007 1.007 41 H 0.033 0.967 42 H 0.261 0.739 43 H 0.033 0.967 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 -17.629 -16.640 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.012 4.012 4 H 0.108 0.892 5 C 0.009 3.991 6 O -0.378 6.378 7 C -0.098 4.098 8 N -0.113 5.113 9 N -0.170 5.170 10 C 0.018 3.982 11 N -0.177 5.177 12 C -0.048 4.048 13 C -0.075 4.075 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.060 4.060 25 C -0.072 4.072 26 N -0.178 5.178 27 C -0.071 4.071 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.011 0.989 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.988 -18.294 -15.451 24.683 hybrid contribution -0.020 1.938 -1.095 2.226 sum 5.968 -16.356 -16.546 24.019 Atomic orbital electron populations 1.21776 0.95712 1.01887 1.01499 1.21529 0.95907 0.93862 1.03542 1.19422 0.95438 0.96805 0.89502 0.89165 1.22040 0.93764 0.97980 0.85320 1.86390 1.29260 1.86928 1.35229 1.24188 0.98347 0.89545 0.97749 1.73892 1.19950 1.21437 0.96039 1.74677 1.12901 1.05525 1.23858 1.22851 0.96310 0.97989 0.81016 1.58935 1.49941 1.00694 1.08100 1.22188 1.01002 0.99962 0.81628 1.22167 0.96458 0.89376 0.99485 1.62324 1.58298 1.02404 1.03371 1.19725 0.91399 0.87523 0.94466 1.21166 1.14150 0.90177 1.29314 0.91874 1.24990 0.95056 0.99351 0.95164 1.69959 1.23276 1.27603 1.32769 0.86452 0.79200 0.83525 0.78299 1.19698 1.21099 1.20959 1.22003 0.97118 0.97185 0.89684 1.22572 0.99578 0.86109 0.98959 1.45977 1.40822 1.24072 1.06949 1.22168 0.99346 0.96279 0.89315 0.92952 0.92282 0.93078 0.90084 0.90673 0.93539 0.91997 0.76879 0.92076 0.89571 0.89853 0.94796 0.98878 0.94914 0.92894 0.94857 0.88656 0.92703 0.90736 0.90105 0.89201 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.65 37.16 0.36 -0.92 16 2 C -0.11 -0.96 5.34 -26.73 -0.14 -1.10 16 3 C 0.01 0.08 2.46 -91.77 -0.23 -0.14 16 4 H 0.09 0.71 6.95 -51.93 -0.36 0.35 16 5 C 0.09 0.72 6.41 37.16 0.24 0.96 16 6 O -0.57 -4.11 13.10 -35.23 -0.46 -4.57 16 7 C 0.17 2.06 5.70 -154.02 -0.88 1.19 16 8 N -0.27 -4.21 12.18 32.99 0.40 -3.81 16 9 N -0.32 -5.48 11.30 30.31 0.34 -5.14 16 10 C 0.37 5.65 7.22 -318.88 -2.30 3.35 16 11 N -0.45 -6.91 4.75 -174.35 -0.83 -7.73 16 12 C 0.08 1.26 4.99 -3.76 -0.02 1.24 16 13 C 0.05 0.96 5.61 -3.77 -0.02 0.94 16 14 N -0.54 -11.15 4.70 -235.91 -1.11 -12.26 16 15 C 0.19 4.87 4.72 -4.97 -0.02 4.84 16 16 C -0.51 -13.79 8.47 -34.44 -0.29 -14.09 16 17 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C 0.07 1.24 5.43 -3.76 -0.02 1.22 16 25 C 0.05 0.81 5.43 -3.77 -0.02 0.79 16 26 N -0.48 -5.81 3.21 -121.46 -0.39 -6.20 16 27 C 0.07 0.57 9.18 59.85 0.55 1.12 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.54 7.59 -51.93 -0.39 0.15 16 31 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.38 1.13 9.12 45.56 0.42 1.54 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.32 8.02 -51.93 -0.42 0.90 16 38 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 41 H 0.03 0.88 8.03 -51.93 -0.42 0.47 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 1.82 6.79 -51.93 -0.35 1.46 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.89 5.35 -51.93 -0.28 0.61 16 47 H 0.08 0.54 7.80 -51.93 -0.40 0.13 16 48 H 0.09 0.51 7.24 -51.92 -0.38 0.14 16 49 H 0.10 0.80 7.65 -51.93 -0.40 0.40 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -32.90 386.53 -10.93 -43.84 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.53 Total: -1.52 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.89 Total: 0.85 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.85 Total: -60.48 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.46 Total: -4.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.90 -10.93 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772160420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.187 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds