Wall clock time and date at job start Tue Mar 31 2020 13:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47289 * 2 1 4 4 H 1.08999 * 109.47011 * 306.02157 * 3 2 1 5 5 C 1.53000 * 109.47261 * 186.02107 * 3 2 1 6 6 O 1.42893 * 109.47260 * 64.98450 * 5 3 2 7 7 C 1.50697 * 109.47102 * 66.02022 * 3 2 1 8 8 N 1.30290 * 126.35144 * 59.97188 * 7 3 2 9 9 N 1.28529 * 110.05898 * 180.02562 * 8 7 3 10 10 C 1.31219 * 109.85624 * 359.97438 * 9 8 7 11 11 N 1.38579 * 126.47190 * 179.97438 * 10 9 8 12 12 C 1.46964 * 110.99774 * 0.02978 * 11 10 9 13 13 C 1.53049 * 109.36268 * 183.18523 * 12 11 10 14 14 N 1.46954 * 109.36729 * 301.59982 * 13 12 11 15 15 C 1.46904 * 111.00037 * 183.18733 * 14 13 12 16 16 C 1.50702 * 109.47017 * 170.00216 * 15 14 13 17 17 H 1.08001 * 120.00216 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00353 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99683 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47021 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47047 * 119.99682 * 20 18 16 23 23 H 1.48499 * 109.47176 * 239.99662 * 20 18 16 24 24 C 1.46964 * 110.88073 * 59.32077 * 14 13 12 25 25 C 1.46956 * 111.00049 * 123.82447 * 11 10 9 26 26 N 1.36450 * 107.05533 * 0.23306 * 10 9 8 27 27 C 1.46500 * 127.13470 * 179.77778 * 26 10 9 28 28 H 1.09001 * 109.47334 * 54.74420 * 1 2 3 29 29 H 1.09001 * 109.47319 * 174.75218 * 1 2 3 30 30 H 1.09006 * 109.47090 * 294.74313 * 1 2 3 31 31 H 1.09005 * 109.47007 * 239.99911 * 2 1 3 32 32 H 1.08996 * 109.47450 * 120.00004 * 2 1 3 33 33 H 1.08999 * 109.46788 * 184.98824 * 5 3 2 34 34 H 1.09002 * 109.46808 * 304.98106 * 5 3 2 35 35 H 0.96706 * 114.00052 * 180.02562 * 6 5 3 36 36 H 1.08996 * 109.48977 * 63.21771 * 12 11 10 37 37 H 1.08999 * 109.50672 * 303.16439 * 12 11 10 38 38 H 1.09001 * 109.49192 * 181.62502 * 13 12 11 39 39 H 1.09002 * 109.48804 * 61.56915 * 13 12 11 40 40 H 1.08999 * 109.46905 * 289.99629 * 15 14 13 41 41 H 1.08994 * 109.47016 * 49.99901 * 15 14 13 42 42 H 0.96994 * 119.99967 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.48560 * 60.64635 * 24 14 13 44 44 H 1.09000 * 109.48808 * 180.71452 * 24 14 13 45 45 H 1.09002 * 109.49314 * 296.78400 * 25 11 10 46 46 H 1.09005 * 109.48435 * 56.82452 * 25 11 10 47 47 H 1.08995 * 109.47685 * 90.02218 * 27 26 10 48 48 H 1.09010 * 109.46512 * 210.02167 * 27 26 10 49 49 H 1.08995 * 109.46807 * 330.01144 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 3.5625 1.4451 -0.1513 6 8 3.9148 0.9193 -1.4324 7 6 1.6631 2.1086 1.2982 8 7 2.0204 1.7301 2.4926 9 7 1.5222 2.5224 3.3735 10 6 0.8149 3.4569 2.7833 11 7 0.1282 4.4870 3.4060 12 6 0.2849 4.4177 4.8656 13 6 -0.5506 5.5214 5.5186 14 7 -0.1165 6.8287 5.0067 15 6 -0.8445 7.9207 5.6667 16 6 -0.2104 9.2387 5.3034 17 1 0.6478 9.2627 4.6482 18 6 -0.7253 10.4138 5.8085 19 7 -1.7700 10.3845 6.6068 20 14 0.0611 12.0475 5.3588 21 1 1.2137 11.8094 4.4534 22 1 -0.9382 12.9058 4.6734 23 1 0.5332 12.7259 6.5925 24 6 -0.2732 6.8980 3.5470 25 6 0.5623 5.7943 2.8941 26 7 0.8785 3.2194 1.4412 27 6 0.2409 3.9952 0.3745 28 1 -0.3634 0.5932 -0.8392 29 1 -0.3634 -1.0234 -0.0940 30 1 -0.3633 0.4302 0.9334 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9346 2.4658 -0.0626 34 1 4.0063 0.8275 0.6296 35 1 4.8672 0.8908 -1.5975 36 1 1.3345 4.5542 5.1255 37 1 -0.0546 3.4453 5.2223 38 1 -0.4133 5.4902 6.5994 39 1 -1.6035 5.3692 5.2810 40 1 -1.8839 7.9149 5.3385 41 1 -0.8038 7.7834 6.7472 42 1 -2.1324 11.2112 6.9618 43 1 -1.3229 6.7614 3.2872 44 1 0.0666 7.8704 3.1906 45 1 1.6152 5.9465 3.1316 46 1 0.4253 5.8254 1.8132 47 1 0.9176 4.7830 0.0438 48 1 0.0104 3.3383 -0.4643 49 1 -0.6799 4.4411 0.7504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772160420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:18 Heat of formation + Delta-G solvation = 19.160275 kcal Electronic energy + Delta-G solvation = -28305.766101 eV Core-core repulsion = 24496.495205 eV Total energy + Delta-G solvation = -3809.270896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.206 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -44.13903 -40.39641 -38.58580 -36.96909 -36.22030 -35.43961 -34.51488 -32.09644 -31.49024 -30.22653 -28.82401 -28.50816 -26.78193 -25.10599 -24.47137 -23.82408 -23.38440 -22.38923 -21.10968 -20.47593 -18.74350 -18.48071 -18.23889 -17.56889 -17.33638 -16.69401 -16.29189 -16.01275 -15.86953 -15.79419 -15.53947 -15.36627 -15.29214 -14.94730 -14.39145 -14.18751 -14.10703 -13.86425 -13.63691 -13.44509 -13.16958 -13.08998 -12.82818 -12.64710 -12.60210 -12.37853 -12.26656 -12.25954 -12.17537 -11.96662 -11.83841 -11.66400 -11.45919 -11.31120 -11.13956 -10.96908 -10.80996 -10.62145 -9.35244 -9.09866 -8.20643 -6.30767 0.66034 1.15614 1.41516 1.43145 1.55679 1.70727 2.40123 2.53495 3.03065 3.11338 3.19231 3.40537 3.59242 3.71871 3.75524 3.93878 3.97021 4.04732 4.13519 4.21711 4.24840 4.28265 4.30865 4.39792 4.43346 4.44363 4.52816 4.58786 4.62049 4.74289 4.80398 4.86951 4.87596 4.90289 4.97254 4.99579 5.10896 5.18598 5.22748 5.23194 5.33299 5.49300 5.55404 5.64042 6.02284 6.09413 6.26783 6.54421 6.84892 6.86021 7.39164 7.68411 8.90735 Molecular weight = 323.21amu Principal moments of inertia in cm(-1) A = 0.023913 B = 0.002541 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.606000 B =11016.802267 C =11510.525335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.009 3.991 4 H 0.112 0.888 5 C 0.095 3.905 6 O -0.578 6.578 7 C 0.191 3.809 8 N -0.310 5.310 9 N -0.358 5.358 10 C 0.361 3.639 11 N -0.452 5.452 12 C 0.093 3.907 13 C 0.058 3.942 14 N -0.548 5.548 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.072 3.928 25 C 0.068 3.932 26 N -0.477 5.477 27 C 0.059 3.941 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.402 0.598 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.032 0.968 40 H -0.033 1.033 41 H 0.005 0.995 42 H 0.264 0.736 43 H 0.031 0.969 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.110 0.890 47 H 0.100 0.900 48 H 0.118 0.882 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -17.755 -19.737 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.012 4.012 4 H 0.130 0.870 5 C 0.015 3.985 6 O -0.387 6.387 7 C -0.079 4.079 8 N -0.149 5.149 9 N -0.203 5.203 10 C 0.004 3.996 11 N -0.176 5.176 12 C -0.035 4.035 13 C -0.071 4.071 14 N -0.273 5.273 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.208 1.208 24 C -0.057 4.057 25 C -0.059 4.059 26 N -0.172 5.172 27 C -0.082 4.082 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.050 0.950 40 H -0.015 1.015 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.128 0.872 47 H 0.119 0.881 48 H 0.136 0.864 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.886 -18.444 -18.585 27.074 hybrid contribution -0.281 1.866 -0.211 1.899 sum 6.604 -16.578 -18.795 25.917 Atomic orbital electron populations 1.21753 0.95457 1.02542 1.00765 1.21484 0.96025 0.93533 1.03303 1.19623 0.96346 0.96895 0.88342 0.86992 1.21856 0.93012 0.97907 0.85678 1.86340 1.31276 1.86764 1.34294 1.24764 0.96419 0.88678 0.97993 1.73826 1.21532 1.22332 0.97184 1.74570 1.13885 1.06417 1.25411 1.22709 0.96847 0.97749 0.82339 1.58913 1.50257 1.00957 1.07423 1.21958 0.99703 0.99256 0.82533 1.22163 0.96678 0.88498 0.99721 1.62229 1.57622 1.02446 1.05002 1.19358 0.90302 0.88885 0.93116 1.21462 1.14159 0.91129 1.29208 0.91663 1.25901 0.95490 1.03266 0.94949 1.70086 1.24737 1.28735 1.33905 0.85340 0.78540 0.78654 0.78113 1.18538 1.20379 1.20771 1.21978 0.97630 0.98118 0.87973 1.22454 0.97995 0.84871 1.00569 1.46192 1.40338 1.24054 1.06577 1.22566 0.99563 0.97178 0.88904 0.91250 0.91542 0.95602 0.88778 0.92389 0.93460 0.92951 0.74700 0.93259 0.88871 0.89923 0.94955 1.01538 0.97658 0.92693 0.95074 0.89705 0.93754 0.87189 0.88136 0.86361 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.65 71.98 0.69 -1.50 16 2 C -0.11 -1.61 5.34 30.59 0.16 -1.44 16 3 C 0.01 0.14 2.46 -11.54 -0.03 0.11 16 4 H 0.11 1.28 6.95 -2.39 -0.02 1.27 16 5 C 0.09 1.34 6.41 71.98 0.46 1.80 16 6 O -0.58 -6.59 13.10 -148.98 -1.95 -8.54 16 7 C 0.19 4.32 5.70 137.64 0.78 5.11 16 8 N -0.31 -9.43 12.18 -49.54 -0.60 -10.03 16 9 N -0.36 -12.07 11.30 -58.01 -0.66 -12.73 16 10 C 0.36 10.55 7.22 260.11 1.88 12.42 16 11 N -0.45 -13.43 4.75 -705.53 -3.35 -16.78 16 12 C 0.09 2.99 4.99 86.31 0.43 3.42 16 13 C 0.06 2.11 5.61 86.31 0.48 2.59 16 14 N -0.55 -23.17 4.70 -900.27 -4.23 -27.41 16 15 C 0.21 10.92 4.72 85.56 0.40 11.32 16 16 C -0.52 -28.64 8.47 25.60 0.22 -28.42 16 17 H 0.07 3.49 7.13 -2.91 -0.02 3.47 16 18 C 0.00 0.11 5.46 84.66 0.46 0.58 16 19 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 20 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.07 2.56 5.43 86.31 0.47 3.03 16 25 C 0.07 1.92 5.43 86.31 0.47 2.39 16 26 N -0.48 -10.47 3.21 -538.19 -1.73 -12.19 16 27 C 0.06 0.73 9.18 127.77 1.17 1.90 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.02 0.51 7.59 -2.38 -0.02 0.49 16 31 H 0.09 1.23 7.67 -2.38 -0.02 1.22 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.40 1.25 9.12 -74.05 -0.68 0.57 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 2.88 8.02 -2.39 -0.02 2.87 16 38 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 40 H -0.03 -1.87 8.12 -2.39 -0.02 -1.88 16 41 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 42 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 3.21 6.79 -2.39 -0.02 3.20 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.11 2.33 5.35 -2.38 -0.01 2.32 16 47 H 0.10 0.91 7.80 -2.39 -0.02 0.89 16 48 H 0.12 0.82 7.24 -2.38 -0.02 0.80 16 49 H 0.10 1.28 7.65 -2.39 -0.02 1.26 16 Total: -1.00 -72.64 386.53 -1.89 -74.53 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.27 Total: 9.70 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 8.06 Total: 13.32 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -10.29 Total: -134.19 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -1.95 Total: -8.54 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.64 -1.89 -74.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772160420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.686 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds