Wall clock time and date at job start Tue Mar 31 2020 13:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46949 * 240.00070 * 2 1 3 5 5 H 1.08000 * 119.99377 * 239.99795 * 4 2 1 6 6 C 1.37875 * 120.00312 * 60.00187 * 4 2 1 7 7 N 1.31517 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00118 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46793 * 59.99850 * 8 6 4 10 10 H 1.48499 * 109.47250 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47226 * 300.00419 * 8 6 4 12 12 C 1.53001 * 109.47034 * 119.99600 * 2 1 3 13 13 N 1.46497 * 109.47249 * 300.00376 * 12 2 1 14 14 C 1.34786 * 119.99769 * 179.97438 * 13 12 2 15 15 O 1.21580 * 119.99998 * 5.32589 * 14 13 12 16 16 N 1.34778 * 119.99550 * 185.32915 * 14 13 12 17 17 C 1.46922 * 120.63367 * 5.49816 * 16 14 13 18 18 C 1.53192 * 108.77724 * 233.58793 * 17 16 14 19 19 C 1.53043 * 109.31025 * 305.36688 * 18 17 16 20 20 C 1.53038 * 109.53808 * 61.36641 * 19 18 17 21 21 H 1.09001 * 109.50306 * 58.58306 * 20 19 18 22 22 N 1.46906 * 109.49869 * 178.68354 * 20 19 18 23 23 C 1.48527 * 111.00166 * 173.44966 * 22 20 19 24 24 C 1.54938 * 103.22572 * 159.72071 * 23 22 20 25 25 C 1.54588 * 102.92175 * 322.58575 * 24 23 22 26 26 C 1.47898 * 110.99749 * 290.84846 * 22 20 19 27 27 C 1.46924 * 120.62559 * 185.47866 * 16 14 13 28 28 H 1.09007 * 109.47296 * 300.00408 * 1 2 3 29 29 H 1.09000 * 109.47098 * 60.00028 * 1 2 3 30 30 H 1.08989 * 109.47431 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47092 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47128 * 299.99954 * 3 2 1 33 33 H 1.09004 * 109.47385 * 60.00183 * 3 2 1 34 34 H 0.96995 * 119.99734 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47114 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.46748 * 59.99765 * 12 2 1 37 37 H 0.96994 * 120.00178 * 359.97438 * 13 12 2 38 38 H 1.09003 * 109.58689 * 353.37257 * 17 16 14 39 39 H 1.08999 * 109.58686 * 113.65669 * 17 16 14 40 40 H 1.09005 * 109.49501 * 65.31393 * 18 17 16 41 41 H 1.08995 * 109.49912 * 185.38037 * 18 17 16 42 42 H 1.09001 * 109.45965 * 301.34070 * 19 18 17 43 43 H 1.09001 * 109.45717 * 181.38454 * 19 18 17 44 44 H 1.09000 * 110.66746 * 278.15516 * 23 22 20 45 45 H 1.08998 * 110.66784 * 41.28637 * 23 22 20 46 46 H 1.09007 * 110.71998 * 204.22801 * 24 23 22 47 47 H 1.08994 * 110.87831 * 81.01905 * 24 23 22 48 48 H 1.09002 * 110.31062 * 263.04111 * 25 24 23 49 49 H 1.09000 * 110.39332 * 140.91909 * 25 24 23 50 50 H 1.09001 * 109.91629 * 333.50457 * 26 22 20 51 51 H 1.08998 * 109.92323 * 94.60513 * 26 22 20 52 52 H 1.09003 * 109.58924 * 6.62633 * 27 16 14 53 53 H 1.08997 * 109.70523 * 246.26845 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0080 10 1 1.8269 -0.4199 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.6529 -1.4203 3.7831 16 7 1.3416 0.0777 4.7678 17 6 0.3126 1.1193 4.6454 18 6 0.7584 2.3490 5.4429 19 6 1.0644 1.9340 6.8839 20 6 2.2051 0.9139 6.8914 21 1 3.0871 1.3507 6.4231 22 7 2.5193 0.5398 8.2769 23 6 3.5128 -0.5635 8.3182 24 6 4.0990 -0.4593 9.7486 25 6 4.1605 1.0669 9.9866 26 6 3.1401 1.6689 9.0029 27 6 1.7757 -0.3321 6.1103 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7088 1.1613 -3.4844 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7582 2.3564 38 1 0.1889 1.3892 3.5966 39 1 -0.6326 0.7476 5.0410 40 1 1.6541 2.7724 4.9882 41 1 -0.0379 3.0932 5.4394 42 1 0.1754 1.4881 7.3299 43 1 1.3582 2.8116 7.4598 44 1 3.0243 -1.5268 8.1719 45 1 4.2913 -0.4083 7.5712 46 1 5.0967 -0.8966 9.7893 47 1 3.4403 -0.9366 10.4740 48 1 5.1607 1.4434 9.7717 49 1 3.8808 1.3028 11.0134 50 1 3.6475 2.3288 8.2991 51 1 2.3771 2.2242 9.5484 52 1 2.6174 -1.0199 6.0281 53 1 0.9522 -0.8227 6.6291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260430.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:31 Heat of formation + Delta-G solvation = -27.103870 kcal Electronic energy + Delta-G solvation = -28952.375940 eV Core-core repulsion = 25244.639223 eV Total energy + Delta-G solvation = -3707.736717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43049 -39.15962 -37.13256 -36.20121 -33.63593 -32.86080 -31.95777 -30.77153 -29.22516 -28.57325 -25.92722 -25.71658 -25.32877 -24.23898 -23.29504 -21.63099 -20.96330 -20.37908 -19.38663 -18.86469 -17.97039 -16.36786 -16.24860 -15.87470 -15.53501 -15.14600 -14.84644 -14.61102 -14.55186 -14.16549 -13.70212 -13.51794 -13.50149 -13.31880 -12.95437 -12.88233 -12.58690 -12.40150 -12.22917 -11.93468 -11.66060 -11.58549 -11.38639 -11.29701 -11.18443 -11.08528 -10.95995 -10.84238 -10.82236 -10.71827 -10.58145 -10.36996 -10.18897 -9.71442 -9.61848 -9.28721 -8.78780 -8.68308 -8.66278 -8.38644 -8.10506 -6.00966 -4.10786 2.89461 3.31104 3.35156 3.39192 3.57339 3.74871 4.28836 4.36489 4.37539 4.44672 4.63677 4.71854 4.73330 4.84332 4.94879 5.03792 5.16000 5.23551 5.25748 5.34211 5.39793 5.47651 5.51235 5.56196 5.65302 5.69168 5.71009 5.73825 5.80404 5.85552 5.87266 5.94714 6.12502 6.21943 6.38377 6.50881 6.52872 6.63204 6.80982 6.82973 6.87015 6.94238 7.04367 7.11800 7.28132 7.40511 7.56918 7.70796 8.02146 8.13400 8.38696 8.44542 8.88735 9.04160 9.54794 11.00523 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.002529 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.041278 B =11068.000137 C =11590.631775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.733 5.733 14 C 0.702 3.298 15 O -0.598 6.598 16 N -0.634 5.634 17 C 0.111 3.889 18 C -0.135 4.135 19 C -0.106 4.106 20 C 0.062 3.938 21 H 0.047 0.953 22 N -0.511 5.511 23 C 0.030 3.970 24 C -0.123 4.123 25 C -0.132 4.132 26 C 0.037 3.963 27 C 0.139 3.861 28 H 0.004 0.996 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.393 0.607 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.078 0.922 52 H 0.091 0.909 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 4.774 22.794 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.389 5.389 14 C 0.404 3.596 15 O -0.477 6.477 16 N -0.373 5.373 17 C -0.013 4.013 18 C -0.174 4.174 19 C -0.144 4.144 20 C -0.048 4.048 21 H 0.065 0.935 22 N -0.235 5.235 23 C -0.097 4.097 24 C -0.161 4.161 25 C -0.170 4.170 26 C -0.091 4.091 27 C 0.015 3.985 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.231 0.769 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.096 0.904 52 H 0.109 0.891 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.065 4.029 22.894 23.246 hybrid contribution 0.789 0.322 -1.316 1.568 sum 0.854 4.352 21.578 22.029 Atomic orbital electron populations 1.21822 0.97804 0.99180 0.99926 1.18352 0.92762 0.92743 0.90551 1.21819 0.98592 0.98387 0.99904 1.20947 1.31459 1.12094 0.89864 0.92466 1.24876 0.94873 0.94940 0.98827 1.69794 1.36676 1.22771 1.23297 0.86626 0.79233 0.79795 0.82156 1.20280 1.21352 1.20294 1.21589 0.97977 0.95337 0.82486 1.45678 1.55937 1.32753 1.04563 1.15963 0.80781 0.82210 0.80666 1.90860 1.39828 1.31357 1.85667 1.47201 1.42854 1.42218 1.05030 1.21619 0.91009 0.87754 1.00888 1.21943 1.02255 0.97595 0.95608 1.21498 0.98504 0.98084 0.96325 1.22229 0.97971 0.96405 0.88185 0.93527 1.64771 1.39349 1.06479 1.12945 1.23280 0.93873 0.95968 0.96607 1.22470 1.00987 0.95882 0.96770 1.22400 0.98935 0.95910 0.99739 1.22846 0.96401 0.93539 0.96284 1.21335 1.01031 0.95256 0.80903 0.97694 0.89607 0.95410 0.95457 0.89612 0.97709 0.92976 0.92943 0.93046 0.76934 0.90119 0.91276 0.91449 0.90311 0.90858 0.91901 0.89602 0.93389 0.91092 0.90711 0.91617 0.91055 0.93813 0.90364 0.89063 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.27 4.51 -4.04 -0.02 3.25 16 13 N -0.73 -13.73 4.85 -65.23 -0.32 -14.05 16 14 C 0.70 13.17 8.29 -86.91 -0.72 12.45 16 15 O -0.60 -13.38 15.79 5.30 0.08 -13.30 16 16 N -0.63 -9.16 2.97 -178.50 -0.53 -9.69 16 17 C 0.11 1.25 6.43 -3.71 -0.02 1.22 16 18 C -0.14 -1.25 6.08 -26.61 -0.16 -1.42 16 19 C -0.11 -0.97 5.23 -26.69 -0.14 -1.11 16 20 C 0.06 0.67 1.87 -67.59 -0.13 0.54 16 21 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16 22 N -0.51 -4.99 5.11 -222.36 -1.14 -6.13 16 23 C 0.03 0.29 5.18 -1.90 -0.01 0.28 16 24 C -0.12 -0.93 7.06 -24.87 -0.18 -1.10 16 25 C -0.13 -0.94 6.93 -25.38 -0.18 -1.11 16 26 C 0.04 0.31 5.73 -2.76 -0.02 0.29 16 27 C 0.14 1.79 5.22 -3.71 -0.02 1.77 16 28 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.03 0.62 8.14 -51.94 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.39 6.67 3.66 -40.82 -0.15 6.52 16 38 H 0.08 0.94 5.58 -51.93 -0.29 0.65 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.52 7.46 -51.93 -0.39 0.14 16 44 H 0.09 0.82 7.77 -51.93 -0.40 0.42 16 45 H 0.05 0.51 8.02 -51.93 -0.42 0.09 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.04 0.38 7.58 -51.93 -0.39 -0.01 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 1.35 6.05 -51.93 -0.31 1.03 16 53 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -29.06 391.16 -11.51 -40.56 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -9.57 Total: 4.93 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.43 Total: -0.91 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -1.46 Total: -52.98 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.06 -11.51 -40.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260430.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.460 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds