Wall clock time and date at job start Tue Mar 31 2020 13:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47229 * 2 1 4 4 H 1.08995 * 109.47516 * 305.00039 * 3 2 1 5 5 C 1.53000 * 109.46850 * 65.00317 * 3 2 1 6 6 C 1.52999 * 109.47331 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46888 * 300.00009 * 6 5 3 8 8 C 1.53000 * 109.47142 * 59.99875 * 7 6 5 9 9 C 1.52995 * 109.46989 * 299.99853 * 8 7 6 10 10 H 1.09004 * 109.47146 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47124 * 300.00117 * 9 8 7 12 12 C 1.34783 * 119.99999 * 274.99851 * 11 9 8 13 13 O 1.21591 * 119.99897 * 5.08047 * 12 11 9 14 14 N 1.34774 * 120.00248 * 185.07321 * 12 11 9 15 15 C 1.47077 * 120.88397 * 175.00578 * 14 12 11 16 16 C 1.53238 * 108.52377 * 231.20909 * 15 14 12 17 17 N 1.46905 * 109.34024 * 306.17319 * 16 15 14 18 18 C 1.46898 * 110.99663 * 187.25224 * 17 16 15 19 19 C 1.50701 * 109.46958 * 169.99868 * 18 17 16 20 20 H 1.08003 * 119.99557 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00460 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99582 * 359.72731 * 21 19 18 23 23 Si 1.86793 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47362 * 120.00297 * 23 21 19 26 26 H 1.48509 * 109.46881 * 240.00100 * 23 21 19 27 27 C 1.46891 * 111.26835 * 63.10219 * 17 16 15 28 28 C 1.47088 * 120.87891 * 355.03515 * 14 12 11 29 29 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46949 * 299.99914 * 1 2 3 31 31 H 1.09000 * 109.46636 * 59.99561 * 1 2 3 32 32 H 1.09001 * 109.47516 * 240.00589 * 2 1 3 33 33 H 1.08994 * 109.47475 * 120.00555 * 2 1 3 34 34 H 1.09001 * 109.47099 * 300.00085 * 5 3 2 35 35 H 1.09008 * 109.47062 * 59.99691 * 5 3 2 36 36 H 1.09000 * 109.46847 * 59.99985 * 6 5 3 37 37 H 1.08994 * 109.47449 * 179.97438 * 6 5 3 38 38 H 1.09005 * 109.46766 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.46934 * 299.99774 * 7 6 5 40 40 H 1.09001 * 109.47099 * 179.97438 * 8 7 6 41 41 H 1.08995 * 109.47288 * 60.00117 * 8 7 6 42 42 H 0.96998 * 120.00678 * 95.00409 * 11 9 8 43 43 H 1.09002 * 109.62764 * 111.50196 * 15 14 12 44 44 H 1.08994 * 109.62821 * 350.92092 * 15 14 12 45 45 H 1.08998 * 109.49445 * 186.20660 * 16 15 14 46 46 H 1.09004 * 109.49035 * 66.13203 * 16 15 14 47 47 H 1.08997 * 109.47632 * 49.99908 * 18 17 16 48 48 H 1.09000 * 109.47406 * 289.99758 * 18 17 16 49 49 H 0.97002 * 120.00104 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.49570 * 56.85871 * 27 17 16 51 51 H 1.09004 * 109.49173 * 176.93891 * 27 17 16 52 52 H 1.08997 * 109.62327 * 248.50127 * 28 14 12 53 53 H 1.08994 * 109.62798 * 9.07658 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1459 3.5688 1.3078 7 6 3.6707 3.5700 1.1823 8 6 4.0754 2.8861 -0.1251 9 6 3.5649 1.4438 -0.1254 10 1 3.8536 0.9564 -1.0566 11 7 4.1486 0.7189 1.0060 12 6 5.3654 0.1516 0.8874 13 8 6.0182 0.3190 -0.1247 14 7 5.8588 -0.6010 1.8907 15 6 7.1342 -1.3177 1.7400 16 6 6.9184 -2.7833 2.1318 17 7 6.3256 -2.8458 3.4744 18 6 6.2612 -4.2316 3.9574 19 6 5.8821 -4.2382 5.4159 20 1 5.7070 -3.3060 5.9325 21 6 5.7588 -5.4340 6.0910 22 7 5.9668 -6.5694 5.4605 23 14 5.2897 -5.4420 7.8990 24 1 5.1075 -4.0453 8.3693 25 1 4.0221 -6.1946 8.0782 26 1 6.3672 -6.0926 8.6871 27 6 4.9984 -2.2169 3.5007 28 6 5.1355 -0.7280 3.1652 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5873 2.1492 36 1 1.7115 4.1081 0.4660 37 1 1.8572 4.0562 2.2390 38 1 4.0344 4.5976 1.1822 39 1 4.1049 3.0307 2.0241 40 1 5.1618 2.8873 -0.2147 41 1 3.6412 3.4254 -0.9668 42 1 3.6593 0.6471 1.8405 43 1 7.8845 -0.8710 2.3925 44 1 7.4659 -1.2608 0.7033 45 1 7.8757 -3.3045 2.1321 46 1 6.2467 -3.2562 1.4152 47 1 7.2348 -4.7055 3.8330 48 1 5.5138 -4.7815 3.3853 49 1 5.8797 -7.4108 5.9353 50 1 4.3534 -2.6977 2.7652 51 1 4.5632 -2.3272 4.4940 52 1 5.6937 -0.2246 3.9545 53 1 4.1459 -0.2813 3.0706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601561307.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:13 Heat of formation + Delta-G solvation = -40.492795 kcal Electronic energy + Delta-G solvation = -29323.875916 eV Core-core repulsion = 25615.558612 eV Total energy + Delta-G solvation = -3708.317304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70137 -39.06532 -37.37004 -34.37447 -34.17550 -33.71547 -32.38906 -30.83946 -29.96629 -29.02797 -27.94413 -25.42397 -24.10560 -23.34559 -22.75740 -22.13711 -21.10795 -20.79268 -19.56293 -19.03559 -17.93948 -16.40645 -16.09089 -15.74441 -15.49786 -15.08469 -14.81245 -14.60346 -14.40431 -14.33560 -14.02237 -13.93738 -13.66789 -13.49336 -13.35611 -12.96869 -12.79071 -12.49526 -12.31656 -12.19091 -11.88008 -11.73698 -11.67603 -11.30807 -11.27097 -11.05045 -10.99849 -10.94663 -10.77013 -10.73649 -10.65566 -10.51077 -10.43079 -10.14411 -9.93124 -9.81805 -9.27602 -9.00956 -8.50131 -8.28264 -7.31948 -6.07753 -4.09767 2.79929 3.27175 3.35034 3.37384 3.38872 3.98508 4.34897 4.37476 4.43125 4.51359 4.79089 4.81136 4.92113 5.02617 5.11358 5.18760 5.23693 5.26078 5.29666 5.35064 5.39028 5.41514 5.46449 5.48111 5.50101 5.66268 5.67111 5.77726 5.78620 5.79793 5.84902 5.87616 5.91840 6.00179 6.03927 6.08459 6.10175 6.16182 6.21586 6.30911 6.44884 6.46893 6.62122 6.70470 7.12383 7.22220 7.28032 7.73106 8.00797 8.07195 8.13734 8.46723 8.75994 8.97773 9.54866 11.03090 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.003076 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.853348 B = 9099.987246 C = 9820.010787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.171 3.829 10 H 0.084 0.916 11 N -0.740 5.740 12 C 0.708 3.292 13 O -0.599 6.599 14 N -0.626 5.626 15 C 0.137 3.863 16 C 0.040 3.960 17 N -0.534 5.534 18 C 0.193 3.807 19 C -0.509 4.509 20 H 0.064 0.936 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 C 0.051 3.949 28 C 0.116 3.884 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.394 0.606 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.026 0.974 47 H 0.032 0.968 48 H -0.009 1.009 49 H 0.261 0.739 50 H 0.024 0.976 51 H 0.096 0.904 52 H 0.074 0.926 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 18.699 -10.069 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.113 4.113 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.065 3.935 10 H 0.102 0.898 11 N -0.398 5.398 12 C 0.410 3.590 13 O -0.478 6.478 14 N -0.363 5.363 15 C 0.014 3.986 16 C -0.089 4.089 17 N -0.259 5.259 18 C 0.068 3.932 19 C -0.547 4.547 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.078 4.078 28 C -0.007 4.007 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.009 0.991 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.114 0.886 52 H 0.093 0.907 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.708 18.863 -10.472 23.266 hybrid contribution -1.006 -0.775 0.940 1.580 sum -9.713 18.088 -9.532 22.636 Atomic orbital electron populations 1.21817 0.95799 1.01709 1.01669 1.21551 0.95759 0.95805 1.02610 1.21491 0.94161 0.96679 0.98952 0.89822 1.21644 1.00952 0.95700 0.97133 1.21550 0.95921 0.96526 1.01682 1.21485 0.95536 1.00242 0.98242 1.21935 1.01893 0.95435 0.97700 1.20754 0.91374 0.91640 0.89699 0.89751 1.45379 1.18602 1.58807 1.17027 1.15842 0.81409 0.78581 0.83203 1.90868 1.59781 1.66752 1.30440 1.47380 1.24368 1.50402 1.14140 1.21603 0.83855 0.91149 1.01985 1.22439 1.00246 0.95086 0.91156 1.62065 1.20829 1.22473 1.20573 1.19730 0.96738 0.81399 0.95302 1.21174 1.46328 0.92559 0.94657 0.91772 1.24998 0.95588 0.95500 0.98524 1.69970 1.49855 0.97428 1.36416 0.86448 0.78002 0.78101 0.84898 1.19638 1.21135 1.20991 1.22307 0.91608 0.91849 1.02023 1.21834 0.95283 0.98257 0.85350 0.92755 0.92507 0.92913 0.91866 0.91758 0.91341 0.92192 0.92019 0.92072 0.92271 0.91951 0.91140 0.91456 0.76850 0.91293 0.89442 0.90084 0.95619 0.95016 0.99139 0.92926 0.95795 0.88628 0.90734 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.04 5.17 -26.73 -0.14 -1.17 16 3 C -0.09 -0.74 1.98 -90.62 -0.18 -0.92 16 4 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.12 -0.83 4.79 -26.73 -0.13 -0.96 16 6 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 7 C -0.12 -0.99 5.77 -26.73 -0.15 -1.14 16 8 C -0.13 -1.26 5.60 -26.73 -0.15 -1.41 16 9 C 0.17 1.75 2.19 -67.93 -0.15 1.60 16 10 H 0.08 1.03 7.65 -51.93 -0.40 0.63 16 11 N -0.74 -8.63 3.53 -58.68 -0.21 -8.84 16 12 C 0.71 10.91 8.27 -86.91 -0.72 10.19 16 13 O -0.60 -11.12 15.49 5.29 0.08 -11.04 16 14 N -0.63 -9.62 3.01 -178.19 -0.54 -10.15 16 15 C 0.14 2.20 6.58 -3.60 -0.02 2.17 16 16 C 0.04 0.73 5.62 -3.70 -0.02 0.70 16 17 N -0.53 -11.04 4.62 -235.77 -1.09 -12.13 16 18 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 19 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 20 H 0.06 1.70 7.13 -52.48 -0.37 1.32 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 23 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.05 0.93 5.46 -3.71 -0.02 0.91 16 28 C 0.12 1.65 6.60 -3.60 -0.02 1.63 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.63 7.61 -51.93 -0.39 0.23 16 34 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.06 0.45 6.51 -51.92 -0.34 0.12 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 40 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.39 4.06 4.16 -40.82 -0.17 3.89 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.41 7.09 -51.93 -0.37 1.04 16 45 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 48 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 49 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 53 H 0.07 0.76 5.63 -51.93 -0.29 0.46 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -30.82 394.37 -11.64 -42.46 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -9.64 Total: 1.11 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.91 Total: 2.08 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -1.10 Total: -56.58 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.82 -11.64 -42.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601561307.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.971 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds