Wall clock time and date at job start Tue Mar 31 2020 13:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47229 * 2 1 4 4 H 1.08995 * 109.47516 * 305.00039 * 3 2 1 5 5 C 1.53000 * 109.46850 * 65.00317 * 3 2 1 6 6 C 1.52999 * 109.47331 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46888 * 300.00009 * 6 5 3 8 8 C 1.53000 * 109.47142 * 59.99875 * 7 6 5 9 9 C 1.52995 * 109.46989 * 299.99853 * 8 7 6 10 10 H 1.09004 * 109.47146 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47124 * 300.00117 * 9 8 7 12 12 C 1.34783 * 119.99999 * 274.99851 * 11 9 8 13 13 O 1.21591 * 119.99897 * 5.08047 * 12 11 9 14 14 N 1.34774 * 120.00248 * 185.07321 * 12 11 9 15 15 C 1.47077 * 120.88397 * 175.00578 * 14 12 11 16 16 C 1.53238 * 108.52377 * 231.20909 * 15 14 12 17 17 N 1.46905 * 109.34024 * 306.17319 * 16 15 14 18 18 C 1.46898 * 110.99663 * 187.25224 * 17 16 15 19 19 C 1.50701 * 109.46958 * 169.99868 * 18 17 16 20 20 H 1.08003 * 119.99557 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00460 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99582 * 359.72731 * 21 19 18 23 23 Si 1.86793 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47362 * 120.00297 * 23 21 19 26 26 H 1.48509 * 109.46881 * 240.00100 * 23 21 19 27 27 C 1.46891 * 111.26835 * 63.10219 * 17 16 15 28 28 C 1.47088 * 120.87891 * 355.03515 * 14 12 11 29 29 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46949 * 299.99914 * 1 2 3 31 31 H 1.09000 * 109.46636 * 59.99561 * 1 2 3 32 32 H 1.09001 * 109.47516 * 240.00589 * 2 1 3 33 33 H 1.08994 * 109.47475 * 120.00555 * 2 1 3 34 34 H 1.09001 * 109.47099 * 300.00085 * 5 3 2 35 35 H 1.09008 * 109.47062 * 59.99691 * 5 3 2 36 36 H 1.09000 * 109.46847 * 59.99985 * 6 5 3 37 37 H 1.08994 * 109.47449 * 179.97438 * 6 5 3 38 38 H 1.09005 * 109.46766 * 179.97438 * 7 6 5 39 39 H 1.08995 * 109.46934 * 299.99774 * 7 6 5 40 40 H 1.09001 * 109.47099 * 179.97438 * 8 7 6 41 41 H 1.08995 * 109.47288 * 60.00117 * 8 7 6 42 42 H 0.96998 * 120.00678 * 95.00409 * 11 9 8 43 43 H 1.09002 * 109.62764 * 111.50196 * 15 14 12 44 44 H 1.08994 * 109.62821 * 350.92092 * 15 14 12 45 45 H 1.08998 * 109.49445 * 186.20660 * 16 15 14 46 46 H 1.09004 * 109.49035 * 66.13203 * 16 15 14 47 47 H 1.08997 * 109.47632 * 49.99908 * 18 17 16 48 48 H 1.09000 * 109.47406 * 289.99758 * 18 17 16 49 49 H 0.97002 * 120.00104 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.49570 * 56.85871 * 27 17 16 51 51 H 1.09004 * 109.49173 * 176.93891 * 27 17 16 52 52 H 1.08997 * 109.62327 * 248.50127 * 28 14 12 53 53 H 1.08994 * 109.62798 * 9.07658 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1459 3.5688 1.3078 7 6 3.6707 3.5700 1.1823 8 6 4.0754 2.8861 -0.1251 9 6 3.5649 1.4438 -0.1254 10 1 3.8536 0.9564 -1.0566 11 7 4.1486 0.7189 1.0060 12 6 5.3654 0.1516 0.8874 13 8 6.0182 0.3190 -0.1247 14 7 5.8588 -0.6010 1.8907 15 6 7.1342 -1.3177 1.7400 16 6 6.9184 -2.7833 2.1318 17 7 6.3256 -2.8458 3.4744 18 6 6.2612 -4.2316 3.9574 19 6 5.8821 -4.2382 5.4159 20 1 5.7070 -3.3060 5.9325 21 6 5.7588 -5.4340 6.0910 22 7 5.9668 -6.5694 5.4605 23 14 5.2897 -5.4420 7.8990 24 1 5.1075 -4.0453 8.3693 25 1 4.0221 -6.1946 8.0782 26 1 6.3672 -6.0926 8.6871 27 6 4.9984 -2.2169 3.5007 28 6 5.1355 -0.7280 3.1652 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1252 1.3970 35 1 2.0700 1.5873 2.1492 36 1 1.7115 4.1081 0.4660 37 1 1.8572 4.0562 2.2390 38 1 4.0344 4.5976 1.1822 39 1 4.1049 3.0307 2.0241 40 1 5.1618 2.8873 -0.2147 41 1 3.6412 3.4254 -0.9668 42 1 3.6593 0.6471 1.8405 43 1 7.8845 -0.8710 2.3925 44 1 7.4659 -1.2608 0.7033 45 1 7.8757 -3.3045 2.1321 46 1 6.2467 -3.2562 1.4152 47 1 7.2348 -4.7055 3.8330 48 1 5.5138 -4.7815 3.3853 49 1 5.8797 -7.4108 5.9353 50 1 4.3534 -2.6977 2.7652 51 1 4.5632 -2.3272 4.4940 52 1 5.6937 -0.2246 3.9545 53 1 4.1459 -0.2813 3.0706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601561307.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:12 Heat of formation + Delta-G solvation = -58.333357 kcal Electronic energy + Delta-G solvation = -29324.649540 eV Core-core repulsion = 25615.558612 eV Total energy + Delta-G solvation = -3709.090929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77863 -40.11257 -38.76795 -35.95459 -34.91611 -34.78453 -34.23350 -32.15372 -30.86133 -30.01499 -29.41678 -27.12996 -24.78533 -24.69974 -24.07820 -23.31804 -22.43438 -21.58844 -20.73766 -19.97023 -19.17489 -18.48600 -17.22571 -16.79713 -16.70773 -16.34155 -16.01243 -15.94538 -15.60942 -15.47312 -15.31022 -15.07219 -14.99859 -14.51170 -14.24216 -14.13976 -14.05336 -13.55747 -13.50686 -13.15304 -13.05082 -12.98126 -12.76136 -12.61375 -12.42523 -12.40337 -12.29866 -12.28642 -12.12304 -11.95750 -11.77969 -11.63383 -11.38067 -11.26539 -11.21415 -11.10625 -10.82309 -10.62265 -10.12069 -9.56157 -9.04760 -8.19800 -6.30161 1.43309 1.44558 1.57559 1.63690 2.13784 2.41534 2.88835 3.12777 3.22233 3.63999 3.77446 3.84559 3.94609 4.04193 4.12832 4.17696 4.22440 4.23410 4.36388 4.42110 4.47430 4.50181 4.53155 4.58098 4.67490 4.73889 4.74839 4.79881 4.83900 4.87549 4.92917 5.00177 5.01587 5.11349 5.17645 5.18395 5.20539 5.22827 5.29272 5.32638 5.36414 5.41066 5.45240 5.51720 5.56619 5.64421 5.69887 5.95140 6.03421 6.27729 6.55371 6.85978 6.95531 7.39994 7.55496 8.91831 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.003076 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.853348 B = 9099.987246 C = 9820.010787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.099 0.901 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.126 4.126 9 C 0.168 3.832 10 H 0.061 0.939 11 N -0.724 5.724 12 C 0.705 3.295 13 O -0.633 6.633 14 N -0.630 5.630 15 C 0.147 3.853 16 C 0.044 3.956 17 N -0.537 5.537 18 C 0.208 3.792 19 C -0.519 4.519 20 H 0.070 0.930 21 C 0.000 4.000 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.258 1.258 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.053 3.947 28 C 0.128 3.872 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.402 0.598 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.013 0.987 47 H 0.004 0.996 48 H -0.042 1.042 49 H 0.264 0.736 50 H 0.013 0.987 51 H 0.087 0.913 52 H 0.085 0.915 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 21.165 -8.907 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.117 0.883 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.165 4.165 9 C 0.063 3.937 10 H 0.079 0.921 11 N -0.382 5.382 12 C 0.407 3.593 13 O -0.514 6.514 14 N -0.367 5.367 15 C 0.023 3.977 16 C -0.085 4.085 17 N -0.261 5.261 18 C 0.082 3.918 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.198 4.198 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.181 1.181 25 H -0.206 1.206 26 H -0.208 1.208 27 C -0.076 4.076 28 C 0.005 3.995 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.242 0.758 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.023 0.977 48 H -0.024 1.024 49 H 0.072 0.928 50 H 0.031 0.969 51 H 0.105 0.895 52 H 0.103 0.897 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.594 21.368 -9.308 25.602 hybrid contribution -0.418 -1.552 0.483 1.678 sum -11.012 19.816 -8.824 24.327 Atomic orbital electron populations 1.21789 0.94530 1.01665 1.02649 1.21529 0.96848 0.96043 1.01282 1.21435 0.91955 0.96483 1.00343 0.88316 1.21655 1.01851 0.95648 0.96103 1.21522 0.94435 0.96486 1.02697 1.21463 0.96852 1.00150 0.96752 1.21875 1.00078 0.95196 0.99334 1.20881 0.93084 0.91612 0.88105 0.92107 1.45307 1.17220 1.57865 1.17835 1.15985 0.82105 0.78647 0.82563 1.90846 1.60931 1.67977 1.31693 1.47402 1.24254 1.50380 1.14622 1.21443 0.84588 0.89532 1.02091 1.22457 0.99743 0.96833 0.89500 1.62002 1.22555 1.19515 1.22073 1.19382 0.94041 0.83557 0.94832 1.21482 1.46030 0.92904 0.95333 0.91148 1.25944 0.95386 0.95022 1.03438 1.70107 1.50973 0.98175 1.38497 0.85308 0.77583 0.78737 0.78830 1.18125 1.20644 1.20790 1.22338 0.89892 0.94125 1.01292 1.21808 0.97229 0.95442 0.85017 0.93390 0.91469 0.91939 0.93357 0.93011 0.89890 0.92535 0.90941 0.91093 0.91691 0.93088 0.94044 0.89816 0.75814 0.90293 0.89465 0.89983 0.96891 0.97742 1.02402 0.92769 0.96906 0.89466 0.89728 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.22 16 2 C -0.12 -1.91 5.17 30.60 0.16 -1.75 16 3 C -0.08 -1.14 1.98 -10.79 -0.02 -1.16 16 4 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.12 -1.28 4.79 30.59 0.15 -1.13 16 6 C -0.11 -1.20 5.92 30.59 0.18 -1.02 16 7 C -0.11 -1.67 5.77 30.60 0.18 -1.49 16 8 C -0.13 -2.27 5.60 30.59 0.17 -2.10 16 9 C 0.17 3.29 2.19 44.99 0.10 3.39 16 10 H 0.06 1.50 7.65 -2.39 -0.02 1.48 16 11 N -0.72 -16.16 3.53 -457.81 -1.62 -17.78 16 12 C 0.71 21.43 8.27 179.05 1.48 22.91 16 13 O -0.63 -23.70 15.49 -4.00 -0.06 -23.77 16 14 N -0.63 -18.87 3.01 -835.94 -2.52 -21.39 16 15 C 0.15 4.67 6.58 86.35 0.57 5.24 16 16 C 0.04 1.62 5.62 86.38 0.49 2.11 16 17 N -0.54 -22.52 4.62 -899.82 -4.16 -26.68 16 18 C 0.21 10.93 4.72 85.56 0.40 11.33 16 19 C -0.52 -28.36 8.41 25.60 0.22 -28.15 16 20 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.94 -55.84 13.29 21.45 0.28 -55.56 16 23 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 27 C 0.05 1.88 5.46 86.38 0.47 2.35 16 28 C 0.13 3.43 6.60 86.35 0.57 4.00 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.73 6.56 -2.39 -0.02 0.72 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.95 7.61 -2.39 -0.02 0.93 16 34 H 0.08 0.74 6.56 -2.39 -0.02 0.73 16 35 H 0.06 0.68 6.51 -2.38 -0.02 0.66 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.05 0.86 7.60 -2.39 -0.02 0.84 16 40 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.40 7.50 4.16 -92.71 -0.39 7.12 16 43 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.09 2.82 7.09 -2.39 -0.02 2.80 16 45 H 0.08 2.98 7.99 -2.39 -0.02 2.96 16 46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.00 0.26 7.97 -2.39 -0.02 0.24 16 48 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 49 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 50 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 51 H 0.09 3.28 6.67 -2.38 -0.02 3.26 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.10 2.01 5.63 -2.39 -0.01 2.00 16 Total: -1.00 -68.16 394.37 0.71 -67.45 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.49 Total: 18.99 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.26 Total: 13.76 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -8.00 Total: -121.40 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.16 0.71 -67.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601561307.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.118 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds