Wall clock time and date at job start Tue Mar 31 2020 14:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46898 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.46843 * 110.98864 * 45.80254 * 4 3 2 6 6 C 1.53048 * 109.51281 * 185.85003 * 5 4 3 7 7 C 1.53117 * 109.27450 * 300.81245 * 6 5 4 8 8 C 1.53117 * 109.16159 * 57.65702 * 7 6 5 9 9 H 1.09002 * 109.53707 * 62.29949 * 8 7 6 10 10 C 1.50699 * 109.50351 * 182.40395 * 8 7 6 11 11 O 1.21277 * 120.00204 * 119.80509 * 10 8 7 12 12 N 1.34778 * 120.00076 * 299.79782 * 10 8 7 13 13 C 1.46495 * 120.00427 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.49423 * 324.93305 * 13 12 10 15 15 C 1.53036 * 109.49672 * 204.84123 * 13 12 10 16 16 C 1.53045 * 109.53971 * 178.67865 * 15 13 12 17 17 C 1.53195 * 109.31048 * 61.36253 * 16 15 13 18 18 N 1.46930 * 108.77655 * 305.36760 * 17 16 15 19 19 C 1.36931 * 120.63252 * 233.58219 * 18 17 16 20 20 H 1.08003 * 119.99636 * 27.69940 * 19 18 17 21 21 C 1.38807 * 120.00101 * 207.69533 * 19 18 17 22 22 N 1.31615 * 120.00250 * 17.36589 * 21 19 18 23 23 Si 1.86805 * 119.99860 * 197.35524 * 21 19 18 24 24 H 1.48506 * 109.46862 * 90.00592 * 23 21 19 25 25 H 1.48500 * 109.46872 * 210.00033 * 23 21 19 26 26 H 1.48499 * 109.47402 * 330.00738 * 23 21 19 27 27 C 1.46934 * 118.73579 * 53.60896 * 18 17 16 28 28 C 1.46843 * 110.99814 * 170.00428 * 4 3 2 29 29 H 1.08997 * 109.47109 * 59.99135 * 1 2 3 30 30 H 1.08993 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46270 * 299.99417 * 1 2 3 32 32 H 1.09010 * 109.46657 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47553 * 120.00595 * 2 1 3 34 34 H 1.09007 * 109.46559 * 60.00307 * 3 2 1 35 35 H 1.08995 * 109.47242 * 300.00785 * 3 2 1 36 36 H 1.08993 * 109.47805 * 65.83359 * 5 4 3 37 37 H 1.09008 * 109.46467 * 305.85561 * 5 4 3 38 38 H 1.08996 * 109.50090 * 180.87070 * 6 5 4 39 39 H 1.09001 * 109.53147 * 60.77537 * 6 5 4 40 40 H 1.09000 * 109.52278 * 297.75184 * 7 6 5 41 41 H 1.09001 * 109.51732 * 177.55845 * 7 6 5 42 42 H 0.97006 * 119.99784 * 0.02562 * 12 10 8 43 43 H 1.08991 * 109.46372 * 298.70010 * 15 13 12 44 44 H 1.09006 * 109.46493 * 58.66224 * 15 13 12 45 45 H 1.09003 * 109.49715 * 301.41687 * 16 15 13 46 46 H 1.08996 * 109.52724 * 181.33342 * 16 15 13 47 47 H 1.08990 * 109.58724 * 185.57774 * 17 16 15 48 48 H 1.09000 * 109.58347 * 65.15476 * 17 16 15 49 49 H 0.96996 * 120.00116 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58153 * 186.60453 * 27 18 17 51 51 H 1.08993 * 109.58895 * 66.17858 * 27 18 17 52 52 H 1.08998 * 109.46532 * 54.14419 * 28 4 3 53 53 H 1.09001 * 109.46617 * 294.16496 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0346 0.4868 -0.9839 6 6 5.5576 0.4070 -0.8557 7 6 6.1584 1.7951 -1.0938 8 6 5.5582 2.7816 -0.0882 9 1 5.8216 2.4757 0.9243 10 6 6.0999 4.1626 -0.3536 11 8 5.3428 5.0672 -0.6353 12 7 7.4257 4.3925 -0.2777 13 6 7.9524 5.7351 -0.5352 14 1 7.3579 6.2162 -1.3119 15 6 9.4085 5.6331 -0.9950 16 6 9.9495 7.0327 -1.2958 17 6 9.9036 7.8787 -0.0195 18 7 8.5330 7.8624 0.5097 19 6 7.8734 9.0327 0.7747 20 1 8.1182 9.9276 0.2219 21 6 6.8901 9.0689 1.7538 22 7 6.8188 8.1084 2.6508 23 14 5.6680 10.4810 1.7983 24 1 4.4831 10.1365 0.9721 25 1 5.2408 10.7218 3.2000 26 1 6.3084 11.7072 1.2583 27 6 7.8839 6.5662 0.7498 28 6 4.0352 2.7926 -0.2386 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8902 32 1 1.8933 -0.5137 -0.8902 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.7716 0.8175 -1.9886 37 1 3.6027 -0.4972 -0.8009 38 1 5.9490 -0.2908 -1.5960 39 1 5.8216 0.0627 0.1442 40 1 5.9279 2.1228 -2.1075 41 1 7.2393 1.7518 -0.9607 42 1 8.0314 3.6689 -0.0527 43 1 10.0066 5.1740 -0.2079 44 1 9.4629 5.0215 -1.8957 45 1 9.3367 7.5020 -2.0655 46 1 10.9790 6.9579 -1.6459 47 1 10.1941 8.9036 -0.2498 48 1 10.5861 7.4608 0.7206 49 1 6.1315 8.1335 3.3347 50 1 6.8418 6.7253 1.0269 51 1 8.4016 6.0413 1.5525 52 1 3.6037 3.4834 0.4857 53 1 3.7722 3.1124 -1.2469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008280949.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:12 Heat of formation + Delta-G solvation = -30.760341 kcal Electronic energy + Delta-G solvation = -28838.710037 eV Core-core repulsion = 25130.814764 eV Total energy + Delta-G solvation = -3707.895273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.12885 -38.64495 -37.20258 -35.10281 -34.08036 -32.68120 -32.03970 -31.15650 -29.98572 -28.67168 -26.44357 -25.23933 -24.55928 -23.10221 -22.27298 -21.97512 -21.06530 -20.03201 -19.65643 -19.08588 -16.98314 -16.72926 -16.00307 -15.61846 -15.46201 -15.04110 -14.80807 -14.43476 -14.20106 -14.00705 -13.98908 -13.62480 -13.45661 -13.37370 -13.01398 -12.67362 -12.61959 -12.34997 -12.29324 -12.17402 -11.93698 -11.79168 -11.58542 -11.30467 -11.13958 -10.98834 -10.80982 -10.70479 -10.68995 -10.57135 -10.48683 -10.42401 -10.21275 -9.93879 -9.90935 -9.49019 -9.19169 -8.48467 -8.40396 -8.38929 -6.62746 -5.72118 -3.15455 3.09918 3.42055 3.46346 3.52170 3.52895 3.92970 4.56445 4.57373 4.61171 4.71771 4.80765 4.84225 5.05921 5.08549 5.17810 5.27978 5.36928 5.38234 5.41115 5.43830 5.48467 5.51386 5.56809 5.59454 5.61873 5.66588 5.73292 5.75126 5.79408 5.83243 5.91561 5.95656 6.00421 6.09823 6.11456 6.16904 6.20448 6.36203 6.44056 6.53803 6.72842 6.80021 6.96357 6.97606 6.98760 7.01505 7.34303 7.76559 7.86517 8.00239 8.51394 8.72729 9.26415 9.90457 10.45252 11.35731 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.003225 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.912742 B = 8680.572194 C =10401.654248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.046 3.954 6 C -0.115 4.115 7 C -0.111 4.111 8 C -0.103 4.103 9 H 0.104 0.896 10 C 0.515 3.485 11 O -0.534 6.534 12 N -0.719 5.719 13 C 0.117 3.883 14 H 0.080 0.920 15 C -0.115 4.115 16 C -0.131 4.131 17 C 0.142 3.858 18 N -0.589 5.589 19 C -0.256 4.256 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.902 3.098 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.167 3.833 28 C 0.078 3.922 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.391 0.609 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.018 0.982 49 H 0.253 0.747 50 H 0.095 0.905 51 H 0.016 0.984 52 H 0.084 0.916 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -19.515 -7.554 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.081 4.081 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.124 4.124 9 H 0.122 0.878 10 C 0.300 3.700 11 O -0.410 6.410 12 N -0.370 5.370 13 C 0.012 3.988 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.016 3.984 18 N -0.312 5.312 19 C -0.386 4.386 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.542 5.542 23 Si 0.732 3.268 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.040 3.960 28 C -0.050 4.050 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.036 0.964 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.034 0.966 52 H 0.102 0.898 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.701 -18.966 -7.147 20.603 hybrid contribution -0.588 0.602 -0.544 1.003 sum -4.289 -18.363 -7.691 20.366 Atomic orbital electron populations 1.21743 0.95578 1.01660 1.01985 1.21695 0.95717 0.96550 1.02525 1.22157 0.86923 0.96995 1.01191 1.61966 1.07317 1.07415 1.49713 1.22246 0.95482 0.97001 0.93421 1.21586 0.94566 0.96512 1.02589 1.21564 1.00065 0.94524 0.98737 1.21301 0.96228 0.92897 1.02020 0.87799 1.20386 0.82597 0.89915 0.77118 1.90737 1.57125 1.45835 1.47349 1.46065 1.07123 1.12418 1.71371 1.21941 0.93167 0.81911 1.01812 0.90189 1.21669 0.95908 0.97851 0.99923 1.22004 0.99256 0.95520 1.00315 1.20953 0.87783 0.97478 0.92192 1.43978 1.09529 1.02330 1.75338 1.19149 1.16505 0.88949 1.13980 0.91619 1.25027 1.01185 0.97928 0.95145 1.70016 1.34362 1.34396 1.15463 0.86303 0.81922 0.81844 0.76771 1.21279 1.21775 1.20442 1.21092 1.00714 0.84145 0.90057 1.21794 0.93052 0.89082 1.01120 0.92840 0.92618 0.92490 0.91788 0.91065 0.90454 0.94839 0.95085 0.90116 0.91336 0.90787 0.91781 0.91175 0.77556 0.92297 0.93201 0.92177 0.92677 0.92661 0.96430 0.93677 0.88727 0.96555 0.89768 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.02 5.18 -26.73 -0.14 -1.16 16 3 C 0.05 0.56 5.27 -3.82 -0.02 0.54 16 4 N -0.54 -6.11 4.81 -234.67 -1.13 -7.24 16 5 C 0.05 0.44 4.85 -3.83 -0.02 0.42 16 6 C -0.11 -0.99 6.09 -26.65 -0.16 -1.15 16 7 C -0.11 -1.13 5.16 -26.61 -0.14 -1.27 16 8 C -0.10 -1.35 2.69 -91.69 -0.25 -1.60 16 9 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 10 C 0.52 9.02 7.12 -10.99 -0.08 8.94 16 11 O -0.53 -12.02 15.65 5.56 0.09 -11.93 16 12 N -0.72 -11.75 4.99 -53.70 -0.27 -12.02 16 13 C 0.12 2.31 2.60 -67.82 -0.18 2.13 16 14 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 15 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 16 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 17 C 0.14 2.99 6.52 -3.71 -0.02 2.97 16 18 N -0.59 -15.19 3.00 -172.32 -0.52 -15.71 16 19 C -0.26 -7.30 9.58 -15.06 -0.14 -7.45 16 20 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 21 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 22 N -0.90 -27.15 11.19 55.49 0.62 -26.52 16 23 Si 0.90 22.84 29.59 -169.99 -5.03 17.81 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.17 4.13 4.88 -3.71 -0.02 4.11 16 28 C 0.08 1.07 4.00 -3.83 -0.02 1.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.48 6.21 -51.92 -0.32 0.16 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.65 5.81 -51.92 -0.30 0.35 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 42 H 0.39 5.02 8.08 -40.82 -0.33 4.69 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.09 2.77 6.04 -51.93 -0.31 2.45 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 53 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -32.96 400.78 -11.44 -44.40 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -10.04 Total: 2.67 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.20 Total: 2.50 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -1.29 Total: -61.49 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.96 -11.44 -44.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008280949.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.640 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds