Wall clock time and date at job start Tue Mar 31 2020 14:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47423 * 2 1 4 4 N 1.46898 * 109.47341 * 180.02562 * 3 2 1 5 5 C 1.46843 * 110.98864 * 45.80254 * 4 3 2 6 6 C 1.53048 * 109.51281 * 185.85003 * 5 4 3 7 7 C 1.53117 * 109.27450 * 300.81245 * 6 5 4 8 8 C 1.53117 * 109.16159 * 57.65702 * 7 6 5 9 9 H 1.09002 * 109.53707 * 62.29949 * 8 7 6 10 10 C 1.50699 * 109.50351 * 182.40395 * 8 7 6 11 11 O 1.21277 * 120.00204 * 119.80509 * 10 8 7 12 12 N 1.34778 * 120.00076 * 299.79782 * 10 8 7 13 13 C 1.46495 * 120.00427 * 180.02562 * 12 10 8 14 14 H 1.09005 * 109.49423 * 324.93305 * 13 12 10 15 15 C 1.53036 * 109.49672 * 204.84123 * 13 12 10 16 16 C 1.53045 * 109.53971 * 178.67865 * 15 13 12 17 17 C 1.53195 * 109.31048 * 61.36253 * 16 15 13 18 18 N 1.46930 * 108.77655 * 305.36760 * 17 16 15 19 19 C 1.36931 * 120.63252 * 233.58219 * 18 17 16 20 20 H 1.08003 * 119.99636 * 27.69940 * 19 18 17 21 21 C 1.38807 * 120.00101 * 207.69533 * 19 18 17 22 22 N 1.31615 * 120.00250 * 17.36589 * 21 19 18 23 23 Si 1.86805 * 119.99860 * 197.35524 * 21 19 18 24 24 H 1.48506 * 109.46862 * 90.00592 * 23 21 19 25 25 H 1.48500 * 109.46872 * 210.00033 * 23 21 19 26 26 H 1.48499 * 109.47402 * 330.00738 * 23 21 19 27 27 C 1.46934 * 118.73579 * 53.60896 * 18 17 16 28 28 C 1.46843 * 110.99814 * 170.00428 * 4 3 2 29 29 H 1.08997 * 109.47109 * 59.99135 * 1 2 3 30 30 H 1.08993 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46270 * 299.99417 * 1 2 3 32 32 H 1.09010 * 109.46657 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47553 * 120.00595 * 2 1 3 34 34 H 1.09007 * 109.46559 * 60.00307 * 3 2 1 35 35 H 1.08995 * 109.47242 * 300.00785 * 3 2 1 36 36 H 1.08993 * 109.47805 * 65.83359 * 5 4 3 37 37 H 1.09008 * 109.46467 * 305.85561 * 5 4 3 38 38 H 1.08996 * 109.50090 * 180.87070 * 6 5 4 39 39 H 1.09001 * 109.53147 * 60.77537 * 6 5 4 40 40 H 1.09000 * 109.52278 * 297.75184 * 7 6 5 41 41 H 1.09001 * 109.51732 * 177.55845 * 7 6 5 42 42 H 0.97006 * 119.99784 * 0.02562 * 12 10 8 43 43 H 1.08991 * 109.46372 * 298.70010 * 15 13 12 44 44 H 1.09006 * 109.46493 * 58.66224 * 15 13 12 45 45 H 1.09003 * 109.49715 * 301.41687 * 16 15 13 46 46 H 1.08996 * 109.52724 * 181.33342 * 16 15 13 47 47 H 1.08990 * 109.58724 * 185.57774 * 17 16 15 48 48 H 1.09000 * 109.58347 * 65.15476 * 17 16 15 49 49 H 0.96996 * 120.00116 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.58153 * 186.60453 * 27 18 17 51 51 H 1.08993 * 109.58895 * 66.17858 * 27 18 17 52 52 H 1.08998 * 109.46532 * 54.14419 * 28 4 3 53 53 H 1.09001 * 109.46617 * 294.16496 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0346 0.4868 -0.9839 6 6 5.5576 0.4070 -0.8557 7 6 6.1584 1.7951 -1.0938 8 6 5.5582 2.7816 -0.0882 9 1 5.8216 2.4757 0.9243 10 6 6.0999 4.1626 -0.3536 11 8 5.3428 5.0672 -0.6353 12 7 7.4257 4.3925 -0.2777 13 6 7.9524 5.7351 -0.5352 14 1 7.3579 6.2162 -1.3119 15 6 9.4085 5.6331 -0.9950 16 6 9.9495 7.0327 -1.2958 17 6 9.9036 7.8787 -0.0195 18 7 8.5330 7.8624 0.5097 19 6 7.8734 9.0327 0.7747 20 1 8.1182 9.9276 0.2219 21 6 6.8901 9.0689 1.7538 22 7 6.8188 8.1084 2.6508 23 14 5.6680 10.4810 1.7983 24 1 4.4831 10.1365 0.9721 25 1 5.2408 10.7218 3.2000 26 1 6.3084 11.7072 1.2583 27 6 7.8839 6.5662 0.7498 28 6 4.0352 2.7926 -0.2386 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8902 32 1 1.8933 -0.5137 -0.8902 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.7716 0.8175 -1.9886 37 1 3.6027 -0.4972 -0.8009 38 1 5.9490 -0.2908 -1.5960 39 1 5.8216 0.0627 0.1442 40 1 5.9279 2.1228 -2.1075 41 1 7.2393 1.7518 -0.9607 42 1 8.0314 3.6689 -0.0527 43 1 10.0066 5.1740 -0.2079 44 1 9.4629 5.0215 -1.8957 45 1 9.3367 7.5020 -2.0655 46 1 10.9790 6.9579 -1.6459 47 1 10.1941 8.9036 -0.2498 48 1 10.5861 7.4608 0.7206 49 1 6.1315 8.1335 3.3347 50 1 6.8418 6.7253 1.0269 51 1 8.4016 6.0413 1.5525 52 1 3.6037 3.4834 0.4857 53 1 3.7722 3.1124 -1.2469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008280949.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:11 Heat of formation + Delta-G solvation = -53.203664 kcal Electronic energy + Delta-G solvation = -28839.683252 eV Core-core repulsion = 25130.814764 eV Total energy + Delta-G solvation = -3708.868489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40324 -39.84873 -38.79384 -35.99264 -35.79663 -34.44072 -32.89049 -32.20128 -31.84772 -30.25654 -27.27384 -27.23113 -25.60400 -24.07176 -23.93711 -23.37538 -22.17437 -21.27929 -20.87281 -20.48233 -18.75858 -18.19868 -17.30295 -16.95590 -16.65078 -16.35647 -16.09170 -15.74421 -15.54534 -15.34261 -15.26338 -14.87765 -14.78345 -14.64818 -14.23799 -14.14266 -13.99142 -13.65787 -13.52476 -13.42028 -12.98672 -12.95443 -12.71917 -12.69237 -12.52106 -12.40694 -12.24138 -12.08979 -12.05135 -11.87208 -11.70318 -11.61972 -11.60737 -11.42415 -11.28892 -11.25675 -10.64161 -10.58463 -10.06804 -9.34679 -8.71208 -7.91133 -5.36812 1.38002 1.43728 1.49513 1.68086 2.14881 2.47000 2.92797 3.24961 3.57323 3.69326 3.79228 3.86066 3.95783 4.01405 4.08675 4.14105 4.19180 4.23140 4.28842 4.33963 4.41279 4.48070 4.53922 4.60182 4.62297 4.70163 4.74259 4.79122 4.81729 4.86969 4.91877 4.96293 4.96865 5.08161 5.09575 5.13855 5.19628 5.20941 5.23340 5.27375 5.33493 5.37625 5.41976 5.48051 5.52398 5.60159 5.77980 6.00727 6.13650 6.34404 6.64856 7.09877 7.36224 7.83503 8.32159 9.13314 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.003225 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.912742 B = 8680.572194 C =10401.654248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.051 3.949 4 N -0.540 5.540 5 C 0.041 3.959 6 C -0.109 4.109 7 C -0.105 4.105 8 C -0.091 4.091 9 H 0.114 0.886 10 C 0.509 3.491 11 O -0.593 6.593 12 N -0.705 5.705 13 C 0.131 3.869 14 H 0.046 0.954 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.135 3.865 18 N -0.611 5.611 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.051 4.051 22 N -0.929 5.929 23 Si 0.961 3.039 24 H -0.296 1.296 25 H -0.290 1.290 26 H -0.261 1.261 27 C 0.178 3.822 28 C 0.084 3.916 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.414 0.586 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.023 0.977 49 H 0.247 0.753 50 H 0.041 0.959 51 H 0.000 1.000 52 H 0.053 0.947 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -22.149 -8.986 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.265 5.265 5 C -0.086 4.086 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.113 4.113 9 H 0.132 0.868 10 C 0.296 3.704 11 O -0.473 6.473 12 N -0.356 5.356 13 C 0.025 3.975 14 H 0.065 0.935 15 C -0.144 4.144 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.335 5.335 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.575 5.575 23 Si 0.789 3.211 24 H -0.224 1.224 25 H -0.216 1.216 26 H -0.185 1.185 27 C 0.051 3.949 28 C -0.045 4.045 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.251 0.749 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.073 0.927 48 H 0.041 0.959 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.018 0.982 52 H 0.071 0.929 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.870 -21.638 -8.595 23.358 hybrid contribution -1.126 1.441 -0.097 1.831 sum -2.995 -20.197 -8.692 22.192 Atomic orbital electron populations 1.21739 0.94870 1.02498 1.01758 1.21639 0.96270 0.94614 1.03070 1.22227 0.86473 0.98686 1.00259 1.62004 1.07912 1.06052 1.50504 1.22414 0.96522 0.97106 0.92545 1.21600 0.93479 0.95673 1.03862 1.21596 1.01359 0.94412 0.96965 1.21267 0.95601 0.90792 1.03619 0.86788 1.21249 0.82451 0.91077 0.75594 1.90713 1.58558 1.48069 1.49932 1.45869 1.07287 1.11826 1.70644 1.21467 0.95666 0.82515 0.97869 0.93534 1.21636 0.92581 0.98156 1.01987 1.21907 1.01746 0.94932 0.97554 1.21189 0.85132 0.98691 0.93986 1.44270 1.11711 1.01794 1.75694 1.19500 1.16633 0.90054 1.13234 0.91433 1.25786 1.03095 1.00493 0.95335 1.70166 1.34871 1.36282 1.16208 0.85359 0.79347 0.79907 0.76480 1.22370 1.21641 1.18489 1.20796 0.97197 0.84745 0.92139 1.21602 0.93719 0.90211 0.98984 0.93024 0.91194 0.92852 0.90734 0.90825 0.91557 0.95772 0.95578 0.88064 0.88609 0.90151 0.92587 0.88820 0.74938 0.90576 0.89489 0.93209 0.88333 0.92708 0.95936 0.94437 0.94047 0.98173 0.92876 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.74 5.18 30.60 0.16 -1.58 16 3 C 0.05 1.06 5.27 86.30 0.46 1.51 16 4 N -0.54 -12.09 4.81 -896.35 -4.31 -16.40 16 5 C 0.04 0.69 4.85 86.33 0.42 1.11 16 6 C -0.11 -1.49 6.09 30.65 0.19 -1.31 16 7 C -0.11 -1.89 5.16 30.67 0.16 -1.73 16 8 C -0.09 -2.38 2.69 -11.49 -0.03 -2.42 16 9 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 10 C 0.51 18.35 7.12 87.66 0.62 18.97 16 11 O -0.59 -28.51 15.65 -3.02 -0.05 -28.55 16 12 N -0.70 -22.64 4.99 -442.19 -2.20 -24.85 16 13 C 0.13 5.18 2.60 45.07 0.12 5.30 16 14 H 0.05 2.17 7.58 -2.38 -0.02 2.15 16 15 C -0.11 -3.09 5.35 30.62 0.16 -2.93 16 16 C -0.12 -3.82 6.08 30.67 0.19 -3.64 16 17 C 0.13 5.53 6.52 86.36 0.56 6.09 16 18 N -0.61 -32.18 3.00 -699.10 -2.09 -34.27 16 19 C -0.26 -15.45 9.58 84.03 0.81 -14.65 16 20 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 21 C -0.05 -3.09 4.91 84.86 0.42 -2.68 16 22 N -0.93 -58.86 11.19 21.65 0.24 -58.61 16 23 Si 0.96 48.64 29.59 68.60 2.03 50.67 16 24 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 25 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 26 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 27 C 0.18 9.14 4.88 86.36 0.42 9.57 16 28 C 0.08 2.42 4.00 86.33 0.35 2.76 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.95 6.21 -2.38 -0.01 0.93 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.02 0.54 8.08 -2.39 -0.02 0.52 16 36 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 1.31 5.81 -2.38 -0.01 1.30 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.27 7.66 -2.39 -0.02 1.25 16 42 H 0.41 9.58 8.08 -92.70 -0.75 8.83 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 50 H 0.04 2.56 6.04 -2.39 -0.01 2.55 16 51 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 52 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 53 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 Total: -1.00 -78.11 400.78 -0.57 -78.67 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.11 Total: 20.19 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 5.70 Total: 13.15 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -8.36 Total: -134.13 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -78.11 -0.57 -78.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008280949.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.471 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds