Wall clock time and date at job start Tue Mar 31 2020 13:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46919 * 2 1 4 4 C 1.53002 * 109.47325 * 120.00475 * 2 1 3 5 5 H 1.08995 * 109.46753 * 300.40176 * 4 2 1 6 6 C 1.50696 * 109.46805 * 60.39941 * 4 2 1 7 7 O 1.21285 * 119.99833 * 76.81520 * 6 4 2 8 8 N 1.34775 * 120.00489 * 256.80750 * 6 4 2 9 9 C 1.47024 * 125.64287 * 354.72329 * 8 6 4 10 10 C 1.54338 * 107.26571 * 178.84572 * 9 8 6 11 11 C 1.55157 * 103.02069 * 338.14810 * 10 9 8 12 12 H 1.09005 * 111.03127 * 277.21096 * 11 10 9 13 13 N 1.46501 * 111.00756 * 153.37861 * 11 10 9 14 14 C 1.36937 * 119.99689 * 92.79663 * 13 11 10 15 15 H 1.07999 * 120.00349 * 0.02562 * 14 13 11 16 16 C 1.38809 * 119.99515 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00544 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00006 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47131 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47247 * 120.00156 * 18 16 14 21 21 H 1.48501 * 109.47161 * 240.00292 * 18 16 14 22 22 C 1.47421 * 125.65336 * 175.03182 * 8 6 4 23 23 N 1.46892 * 109.47135 * 180.40071 * 4 2 1 24 24 C 1.46848 * 111.00214 * 299.21203 * 23 4 2 25 25 C 1.53035 * 109.52466 * 174.16214 * 24 23 4 26 26 C 1.53116 * 109.28120 * 59.17810 * 25 24 23 27 27 C 1.53124 * 109.15670 * 302.34651 * 26 25 24 28 28 C 1.46845 * 111.00290 * 174.99915 * 23 4 2 29 29 H 1.09007 * 109.47000 * 304.06163 * 1 2 3 30 30 H 1.09003 * 109.47403 * 64.05883 * 1 2 3 31 31 H 1.09000 * 109.47139 * 184.06533 * 1 2 3 32 32 H 1.09007 * 109.46850 * 240.00652 * 2 1 3 33 33 H 1.09009 * 109.46896 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47767 * 299.99819 * 3 2 1 35 35 H 1.08998 * 109.46778 * 60.00925 * 3 2 1 36 36 H 1.08995 * 109.88513 * 298.39473 * 9 8 6 37 37 H 1.09002 * 109.87981 * 59.56417 * 9 8 6 38 38 H 1.08998 * 110.85107 * 219.67498 * 10 9 8 39 39 H 1.09001 * 110.66324 * 96.52303 * 10 9 8 40 40 H 0.96991 * 119.99956 * 272.80065 * 13 11 10 41 41 H 0.96994 * 120.00747 * 179.97438 * 17 16 14 42 42 H 1.09001 * 110.36647 * 322.93052 * 22 8 6 43 43 H 1.09000 * 110.36837 * 85.25442 * 22 8 6 44 44 H 1.09001 * 109.45752 * 294.17308 * 24 23 4 45 45 H 1.08998 * 109.46420 * 54.14467 * 24 23 4 46 46 H 1.09004 * 109.50063 * 299.23319 * 25 24 23 47 47 H 1.09000 * 109.50561 * 179.11832 * 25 24 23 48 48 H 1.09002 * 109.52529 * 182.44610 * 26 25 24 49 49 H 1.08998 * 109.52845 * 62.25071 * 26 25 24 50 50 H 1.08999 * 109.50077 * 297.70936 * 27 26 25 51 51 H 1.09008 * 109.50109 * 177.59462 * 27 26 25 52 52 H 1.09006 * 109.46230 * 305.86137 * 28 23 4 53 53 H 1.09001 * 109.46200 * 65.83299 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6708 -0.2118 2.1391 6 6 1.5458 -2.1450 1.2441 7 8 2.0728 -2.9672 0.5249 8 7 0.5183 -2.5045 2.0387 9 6 -0.1373 -1.6434 3.0338 10 6 -1.2719 -2.4685 3.6771 11 6 -1.5514 -3.5654 2.6159 12 1 -2.2149 -3.1940 1.8348 13 7 -2.1024 -4.7712 3.2394 14 6 -3.4587 -4.9365 3.3297 15 1 -4.1223 -4.1783 2.9410 16 6 -3.9807 -6.0792 3.9201 17 7 -3.1721 -7.0036 4.3934 18 14 -5.8309 -6.3053 4.0427 19 1 -6.5140 -5.1323 3.4402 20 1 -6.2285 -7.5369 3.3146 21 1 -6.2213 -6.4265 5.4704 22 6 -0.1302 -3.8283 2.0585 23 7 3.5089 -0.7129 1.2540 24 6 4.0431 -1.4088 0.0763 25 6 5.5652 -1.2551 0.0382 26 6 6.1651 -1.8441 1.3179 27 6 5.5563 -1.1351 2.5308 28 6 4.0345 -1.2923 2.4968 29 1 -0.3633 0.5756 0.8514 30 1 -0.3634 0.4496 -0.9241 31 1 -0.3633 -1.0251 0.0729 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.5823 -1.3424 3.7951 37 1 -0.5534 -0.7625 2.5450 38 1 -2.1567 -1.8525 3.8373 39 1 -0.9394 -2.9146 4.6143 40 1 -1.5065 -5.4522 3.5883 41 1 -3.5368 -7.8020 4.8063 42 1 -0.1880 -4.2376 1.0499 43 1 0.4145 -4.5078 2.7139 44 1 3.7862 -2.4666 0.1321 45 1 3.6118 -0.9775 -0.8270 46 1 5.8226 -0.1982 -0.0315 47 1 5.9629 -1.7849 -0.8275 48 1 7.2452 -1.6979 1.3147 49 1 5.9410 -2.9096 1.3684 50 1 5.8136 -0.0763 2.5004 51 1 5.9476 -1.5792 3.4462 52 1 3.5968 -0.7764 3.3515 53 1 3.7778 -2.3507 2.5411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019823893.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:15 Heat of formation + Delta-G solvation = -43.124794 kcal Electronic energy + Delta-G solvation = -29599.327496 eV Core-core repulsion = 25890.896060 eV Total energy + Delta-G solvation = -3708.431436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96405 -39.81139 -38.33310 -36.82452 -35.94947 -33.43699 -33.34566 -31.74606 -31.06817 -29.78645 -27.96640 -27.74419 -25.66745 -24.42885 -24.23014 -23.65726 -21.81506 -21.37345 -20.81099 -19.78081 -19.35324 -18.37161 -17.51940 -17.40222 -16.56830 -16.38706 -16.01601 -15.74952 -15.43299 -15.22857 -14.95830 -14.76418 -14.57538 -14.52226 -14.20785 -14.01273 -13.92423 -13.47372 -13.40313 -13.25954 -13.13968 -13.05648 -12.96008 -12.90195 -12.70022 -12.43824 -12.25052 -12.10858 -11.95784 -11.90320 -11.79366 -11.73019 -11.63941 -11.60231 -11.28035 -11.16176 -11.03623 -10.97872 -9.73457 -9.15735 -9.07970 -7.97466 -5.28089 1.47120 1.48607 1.48741 1.58570 1.89976 2.55207 2.78669 3.31592 3.45529 3.64280 3.71563 3.86829 3.89725 3.96310 4.01833 4.04308 4.07770 4.21531 4.26924 4.29869 4.33080 4.43253 4.46802 4.51152 4.54175 4.63726 4.67289 4.78005 4.79021 4.85846 4.86296 4.93153 4.97340 4.99888 5.05184 5.09835 5.13844 5.15999 5.22074 5.24933 5.25834 5.29332 5.38260 5.41513 5.48934 5.51598 5.58046 5.93520 6.02493 6.23037 6.51317 7.07868 7.29667 8.00486 8.24657 9.26068 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.002917 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.785218 B = 9597.062505 C =10289.353155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.082 3.918 5 H 0.117 0.883 6 C 0.498 3.502 7 O -0.580 6.580 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.143 4.143 11 C 0.168 3.832 12 H 0.065 0.935 13 N -0.729 5.729 14 C -0.240 4.240 15 H 0.082 0.918 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.974 3.026 19 H -0.262 1.262 20 H -0.297 1.297 21 H -0.293 1.293 22 C 0.107 3.893 23 N -0.495 5.495 24 C 0.031 3.969 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.107 4.107 28 C 0.045 3.955 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.038 0.962 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.087 0.913 53 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.609 21.299 -5.956 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.096 4.096 3 C -0.183 4.183 4 C -0.030 4.030 5 H 0.135 0.865 6 C 0.287 3.713 7 O -0.460 6.460 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.184 4.184 11 C 0.058 3.942 12 H 0.083 0.917 13 N -0.368 5.368 14 C -0.371 4.371 15 H 0.100 0.900 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.803 3.197 19 H -0.186 1.186 20 H -0.225 1.225 21 H -0.220 1.220 22 C -0.018 4.018 23 N -0.218 5.218 24 C -0.097 4.097 25 C -0.148 4.148 26 C -0.160 4.160 27 C -0.145 4.145 28 C -0.083 4.083 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.057 0.943 50 H 0.102 0.898 51 H 0.092 0.908 52 H 0.106 0.894 53 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 15.925 21.431 -6.425 27.463 hybrid contribution -1.169 -2.427 0.390 2.723 sum 14.756 19.004 -6.035 24.805 Atomic orbital electron populations 1.21939 0.94176 1.01156 1.03642 1.21063 0.95915 0.97889 0.94748 1.21633 1.01863 0.92538 1.02299 1.22128 0.89187 0.88989 1.02733 0.86473 1.22403 0.78149 0.92576 0.78123 1.90584 1.56692 1.55322 1.43446 1.48774 1.33034 1.13717 1.38686 1.22270 0.94863 0.93900 0.90749 1.23204 0.98122 0.98007 0.99061 1.21426 0.91139 0.87664 0.93939 0.91664 1.42434 1.03975 1.20359 1.70027 1.19661 0.83982 1.02560 1.30904 0.89984 1.25592 1.02117 0.97041 1.01936 1.69830 1.35066 1.10690 1.46467 0.85065 0.80168 0.77586 0.76869 1.18630 1.22457 1.22031 1.22222 0.93902 0.85521 1.00141 1.62516 1.03307 1.53090 1.02916 1.22547 0.95765 0.98493 0.92861 1.21571 0.93494 1.02004 0.97741 1.21591 1.00675 0.98666 0.95106 1.21524 0.92567 1.02122 0.98271 1.22241 0.97500 0.96078 0.92438 0.90395 0.91032 0.94904 0.92213 0.91721 0.91988 0.91593 0.89792 0.88651 0.89334 0.92067 0.79513 0.94009 0.92759 0.93362 0.93477 0.90969 0.90342 0.91447 0.90204 0.94274 0.89766 0.90761 0.89434 0.97813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.46 71.98 0.61 -2.10 16 2 C -0.08 -1.44 2.14 -10.79 -0.02 -1.46 16 3 C -0.13 -1.74 9.03 71.98 0.65 -1.09 16 4 C 0.08 1.74 1.58 44.17 0.07 1.81 16 5 H 0.12 2.05 6.75 -2.39 -0.02 2.04 16 6 C 0.50 14.78 4.50 87.66 0.39 15.17 16 7 O -0.58 -21.85 13.75 -3.05 -0.04 -21.89 16 8 N -0.61 -17.93 3.06 -811.77 -2.48 -20.42 16 9 C 0.10 2.39 5.84 86.73 0.51 2.90 16 10 C -0.14 -4.30 6.64 31.79 0.21 -4.08 16 11 C 0.17 6.40 3.72 46.38 0.17 6.57 16 12 H 0.07 2.49 8.09 -2.38 -0.02 2.48 16 13 N -0.73 -35.88 5.24 -316.37 -1.66 -37.54 16 14 C -0.24 -12.85 9.96 84.03 0.84 -12.01 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 16 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 17 N -0.97 -58.90 13.06 21.65 0.28 -58.61 16 18 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 C 0.11 3.91 6.53 86.86 0.57 4.48 16 23 N -0.50 -10.36 3.86 -875.56 -3.38 -13.74 16 24 C 0.03 0.72 4.52 86.32 0.39 1.11 16 25 C -0.11 -2.02 6.09 30.64 0.19 -1.84 16 26 C -0.12 -2.19 6.00 30.67 0.18 -2.00 16 27 C -0.11 -1.78 6.09 30.64 0.19 -1.59 16 28 C 0.05 0.95 5.13 86.32 0.44 1.39 16 29 H 0.08 1.10 7.44 -2.38 -0.02 1.08 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.03 0.76 6.88 -2.39 -0.02 0.75 16 32 H 0.06 1.35 6.32 -2.38 -0.02 1.33 16 33 H 0.06 0.97 7.59 -2.38 -0.02 0.95 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 37 H 0.10 1.70 6.81 -2.39 -0.02 1.68 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.37 20.10 7.76 -92.72 -0.72 19.38 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.05 2.17 8.09 -2.39 -0.02 2.15 16 43 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 44 H 0.05 1.50 5.22 -2.39 -0.01 1.48 16 45 H 0.07 1.68 6.04 -2.39 -0.01 1.67 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.09 1.55 8.08 -2.38 -0.02 1.53 16 53 H 0.00 0.10 7.44 -2.39 -0.02 0.08 16 Total: -1.00 -67.07 395.85 0.75 -66.32 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.15 Total: 35.11 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.85 Total: 3.54 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -7.24 Total: -130.31 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.04 Total: -21.89 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.07 0.75 -66.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019823893.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.192 kcal (2) G-P(sol) polarization free energy of solvation -67.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds