Wall clock time and date at job start Tue Mar 31 2020 13:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46806 * 179.97438 * 4 3 2 6 6 C 1.46847 * 111.00168 * 287.76332 * 5 4 3 7 7 C 1.53034 * 109.52093 * 174.16283 * 6 5 4 8 8 C 1.53114 * 109.28001 * 59.18274 * 7 6 5 9 9 C 1.53121 * 109.15990 * 302.34433 * 8 7 6 10 10 C 1.46847 * 110.99600 * 163.55696 * 5 4 3 11 11 H 1.09000 * 109.46348 * 65.83494 * 10 5 4 12 12 C 1.50699 * 109.46140 * 305.85573 * 10 5 4 13 13 O 1.21281 * 120.00363 * 330.88112 * 12 10 5 14 14 N 1.34778 * 119.99968 * 150.88748 * 12 10 5 15 15 C 1.46499 * 120.00002 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.53952 * 113.74279 * 271.67583 * 16 15 14 18 18 N 1.47583 * 86.11762 * 222.04689 * 17 16 15 19 19 C 1.36931 * 134.49068 * 204.63995 * 18 17 16 20 20 H 1.07998 * 119.99745 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00293 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99847 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47146 * 90.00219 * 23 21 19 25 25 H 1.48501 * 109.47220 * 210.00256 * 23 21 19 26 26 H 1.48498 * 109.47142 * 330.00472 * 23 21 19 27 27 C 1.47583 * 91.01641 * 24.64052 * 18 17 16 28 28 H 1.08993 * 109.47436 * 60.00117 * 1 2 3 29 29 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47053 * 299.99372 * 1 2 3 31 31 H 1.08996 * 109.46826 * 240.00062 * 2 1 3 32 32 H 1.09001 * 109.47291 * 120.00484 * 2 1 3 33 33 H 1.08996 * 109.46672 * 60.00109 * 3 2 1 34 34 H 1.08999 * 109.46923 * 300.00659 * 3 2 1 35 35 H 1.09005 * 109.46666 * 60.00251 * 4 3 2 36 36 H 1.08995 * 109.47012 * 300.00192 * 4 3 2 37 37 H 1.09006 * 109.45975 * 54.15059 * 6 5 4 38 38 H 1.09000 * 109.46486 * 294.18310 * 6 5 4 39 39 H 1.09006 * 109.50066 * 179.12541 * 7 6 5 40 40 H 1.09001 * 109.50565 * 299.23759 * 7 6 5 41 41 H 1.09002 * 109.52548 * 62.24633 * 8 7 6 42 42 H 1.09001 * 109.52751 * 182.43932 * 8 7 6 43 43 H 1.08998 * 109.50265 * 297.71234 * 9 8 7 44 44 H 1.09001 * 109.50419 * 177.59326 * 9 8 7 45 45 H 0.96996 * 120.00215 * 359.97438 * 14 12 10 46 46 H 1.08996 * 109.47380 * 299.99848 * 15 14 12 47 47 H 1.09006 * 109.47362 * 59.99904 * 15 14 12 48 48 H 1.09000 * 112.94599 * 43.40589 * 16 15 14 49 49 H 1.09003 * 113.76680 * 336.35068 * 17 16 15 50 50 H 1.08994 * 113.76847 * 107.74273 * 17 16 15 51 51 H 0.97000 * 120.00147 * 179.97438 * 22 21 19 52 52 H 1.08999 * 113.77075 * 221.06226 * 27 18 17 53 53 H 1.09002 * 113.77087 * 89.65621 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.8413 3.4623 -1.3060 7 6 4.2277 4.9410 -1.2269 8 6 5.6995 5.0579 -0.8214 9 6 5.9097 4.3470 0.5184 10 6 5.4746 2.8856 0.3887 11 1 6.0805 2.3925 -0.3715 12 6 5.6612 2.1869 1.7108 13 8 4.7535 2.1573 2.5146 14 7 6.8369 1.5949 2.0001 15 6 7.0186 0.9161 3.2856 16 6 8.4313 0.3335 3.3596 17 6 8.5460 -1.0894 2.7832 18 7 9.4041 -1.3837 3.9474 19 6 10.3913 -2.2968 4.2054 20 1 10.8802 -2.3058 5.1684 21 6 10.7632 -3.2114 3.2297 22 7 10.1671 -3.2006 2.0563 23 14 12.1096 -4.4574 3.5820 24 1 11.5074 -5.6883 4.1542 25 1 12.8163 -4.7927 2.3198 26 1 13.0753 -3.8817 4.5522 27 6 8.7706 -0.2987 4.7217 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 2.7899 3.3759 -1.5805 38 1 4.4548 2.9663 -2.0581 39 1 4.0801 5.4082 -2.2006 40 1 3.6050 5.4406 -0.4848 41 1 6.3252 4.5923 -1.5829 42 1 5.9675 6.1097 -0.7217 43 1 5.3135 4.8373 1.2879 44 1 6.9641 4.3899 0.7916 45 1 7.5629 1.6182 1.3572 46 1 6.8767 1.6302 4.0967 47 1 6.2889 0.1116 3.3780 48 1 9.1940 1.0203 2.9923 49 1 7.6050 -1.6395 2.7807 50 1 9.0698 -1.1358 1.8285 51 1 10.4272 -3.8395 1.3743 52 1 9.4737 0.2863 5.3146 53 1 7.8955 -0.6165 5.2886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032117721.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:39 Heat of formation + Delta-G solvation = 0.839482 kcal Electronic energy + Delta-G solvation = -28253.782727 eV Core-core repulsion = 24547.257726 eV Total energy + Delta-G solvation = -3706.525002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.44261 -38.53640 -37.67044 -35.75746 -34.34639 -33.13058 -32.23710 -31.42196 -28.89644 -28.66289 -26.12601 -24.84740 -24.71383 -23.90649 -22.41403 -21.85236 -20.88692 -20.52918 -19.88671 -18.94122 -17.16127 -16.69835 -16.37169 -15.73680 -15.49916 -15.32685 -14.91160 -14.73014 -14.46673 -14.32061 -13.92682 -13.75219 -13.58931 -13.47439 -13.32176 -13.02644 -12.71598 -12.64282 -12.38252 -12.26330 -11.61905 -11.46877 -11.41310 -11.35057 -11.28179 -11.11294 -11.03546 -10.99211 -10.93860 -10.72988 -10.61459 -10.58709 -10.37881 -9.97930 -9.76129 -9.52801 -9.37033 -8.81830 -8.78029 -8.44567 -6.89365 -5.78574 -3.10661 2.73500 3.17460 3.37865 3.42749 3.44526 3.74607 4.44011 4.52182 4.56651 4.66417 4.81596 4.89047 4.91968 4.97650 5.04126 5.06485 5.17188 5.19890 5.29080 5.30672 5.35540 5.39178 5.43673 5.51838 5.57801 5.64393 5.65640 5.67094 5.73389 5.76047 5.83325 5.86463 5.88232 5.93078 5.99787 6.05392 6.11652 6.21145 6.23851 6.27903 6.35706 6.55600 6.63982 6.75597 6.85756 6.94304 7.20088 7.33907 7.53528 7.69737 7.96733 8.39561 9.03353 9.69339 10.58569 11.38579 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.002639 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.548004 B =10607.137959 C =11642.812750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.108 4.108 4 C 0.049 3.951 5 N -0.515 5.515 6 C 0.055 3.945 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.106 4.106 10 C 0.070 3.930 11 H 0.058 0.942 12 C 0.513 3.487 13 O -0.525 6.525 14 N -0.723 5.723 15 C 0.131 3.869 16 C -0.153 4.153 17 C 0.169 3.831 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.128 3.872 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.400 0.600 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.026 0.974 50 H 0.071 0.929 51 H 0.253 0.747 52 H 0.045 0.955 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.117 15.970 -9.003 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.145 4.145 4 C -0.078 4.078 5 N -0.240 5.240 6 C -0.073 4.073 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.144 4.144 10 C -0.042 4.042 11 H 0.076 0.924 12 C 0.298 3.702 13 O -0.401 6.401 14 N -0.375 5.375 15 C 0.007 3.993 16 C -0.173 4.173 17 C 0.044 3.956 18 N -0.339 5.339 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.001 3.999 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.234 0.766 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.044 0.956 50 H 0.090 0.910 51 H 0.063 0.937 52 H 0.063 0.937 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.805 15.922 -8.124 23.210 hybrid contribution 1.530 -1.380 -0.746 2.191 sum -13.274 14.542 -8.870 21.595 Atomic orbital electron populations 1.21743 0.95850 1.01448 1.01655 1.21501 0.95842 0.96901 1.02140 1.21514 0.94207 0.96443 1.02383 1.22265 0.96195 0.88098 1.01286 1.61668 1.15529 1.18093 1.28755 1.22167 1.01333 0.94773 0.89002 1.21609 0.96569 0.95800 1.01613 1.21576 0.96731 1.00650 0.96734 1.21526 1.01393 0.92660 0.98809 1.21604 0.90521 0.97392 0.94635 0.92417 1.20360 0.82492 0.78753 0.88626 1.90699 1.40848 1.59025 1.49513 1.46138 1.15105 1.55944 1.20310 1.21435 0.97735 0.95934 0.84150 1.23802 0.93940 0.98873 1.00639 1.22311 0.92792 0.86730 0.93797 1.45939 1.38671 1.37306 1.11940 1.19036 1.08970 1.08210 0.98787 0.90252 1.24780 1.00060 0.99470 0.96209 1.69812 1.44060 1.38563 1.04503 0.86119 0.81244 0.81396 0.77006 1.21622 1.21635 1.20613 1.22498 0.95229 0.89347 0.92805 0.92999 0.92875 0.92681 0.92300 0.91744 0.90937 0.92457 0.95118 0.89781 0.90228 0.94901 0.91506 0.90893 0.91999 0.91341 0.90287 0.90932 0.76571 0.91979 0.91512 0.89238 0.95612 0.91036 0.93692 0.93663 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.13 -1.24 5.93 -26.73 -0.16 -1.39 16 3 C -0.11 -1.13 5.27 -26.73 -0.14 -1.27 16 4 C 0.05 0.58 4.60 -3.82 -0.02 0.56 16 5 N -0.52 -5.87 4.21 -228.08 -0.96 -6.83 16 6 C 0.05 0.49 5.30 -3.84 -0.02 0.47 16 7 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 8 C -0.12 -0.91 6.00 -26.61 -0.16 -1.07 16 9 C -0.11 -1.00 5.36 -26.65 -0.14 -1.15 16 10 C 0.07 0.79 2.23 -68.88 -0.15 0.64 16 11 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 12 C 0.51 7.25 5.67 -10.99 -0.06 7.19 16 13 O -0.53 -9.30 15.40 5.56 0.09 -9.22 16 14 N -0.72 -9.76 5.56 -60.29 -0.33 -10.10 16 15 C 0.13 2.03 5.53 -4.04 -0.02 2.01 16 16 C -0.15 -2.70 3.94 -89.69 -0.35 -3.05 16 17 C 0.17 3.86 7.07 -2.97 -0.02 3.84 16 18 N -0.61 -15.65 3.70 -177.87 -0.66 -16.30 16 19 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -27.18 11.38 55.49 0.63 -26.55 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.13 2.57 8.50 -2.97 -0.03 2.54 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 35 H 0.03 0.35 8.05 -51.93 -0.42 -0.07 16 36 H 0.08 1.22 5.69 -51.93 -0.30 0.93 16 37 H 0.08 0.66 6.52 -51.93 -0.34 0.32 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.40 4.67 8.47 -40.82 -0.35 4.32 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 48 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.03 0.62 7.89 -51.93 -0.41 0.21 16 50 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 51 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 52 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 53 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -32.33 409.68 -11.50 -43.83 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -10.09 Total: 1.30 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.33 Total: 0.61 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.32 Total: -59.79 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.33 -11.50 -43.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032117721.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds