Wall clock time and date at job start Tue Mar 31 2020 13:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46806 * 179.97438 * 4 3 2 6 6 C 1.46847 * 111.00168 * 287.76332 * 5 4 3 7 7 C 1.53034 * 109.52093 * 174.16283 * 6 5 4 8 8 C 1.53114 * 109.28001 * 59.18274 * 7 6 5 9 9 C 1.53121 * 109.15990 * 302.34433 * 8 7 6 10 10 C 1.46847 * 110.99600 * 163.55696 * 5 4 3 11 11 H 1.09000 * 109.46348 * 65.83494 * 10 5 4 12 12 C 1.50699 * 109.46140 * 305.85573 * 10 5 4 13 13 O 1.21281 * 120.00363 * 330.88112 * 12 10 5 14 14 N 1.34778 * 119.99968 * 150.88748 * 12 10 5 15 15 C 1.46499 * 120.00002 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.53952 * 113.74279 * 271.67583 * 16 15 14 18 18 N 1.47583 * 86.11762 * 222.04689 * 17 16 15 19 19 C 1.36931 * 134.49068 * 204.63995 * 18 17 16 20 20 H 1.07998 * 119.99745 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00293 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99847 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00215 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47146 * 90.00219 * 23 21 19 25 25 H 1.48501 * 109.47220 * 210.00256 * 23 21 19 26 26 H 1.48498 * 109.47142 * 330.00472 * 23 21 19 27 27 C 1.47583 * 91.01641 * 24.64052 * 18 17 16 28 28 H 1.08993 * 109.47436 * 60.00117 * 1 2 3 29 29 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47053 * 299.99372 * 1 2 3 31 31 H 1.08996 * 109.46826 * 240.00062 * 2 1 3 32 32 H 1.09001 * 109.47291 * 120.00484 * 2 1 3 33 33 H 1.08996 * 109.46672 * 60.00109 * 3 2 1 34 34 H 1.08999 * 109.46923 * 300.00659 * 3 2 1 35 35 H 1.09005 * 109.46666 * 60.00251 * 4 3 2 36 36 H 1.08995 * 109.47012 * 300.00192 * 4 3 2 37 37 H 1.09006 * 109.45975 * 54.15059 * 6 5 4 38 38 H 1.09000 * 109.46486 * 294.18310 * 6 5 4 39 39 H 1.09006 * 109.50066 * 179.12541 * 7 6 5 40 40 H 1.09001 * 109.50565 * 299.23759 * 7 6 5 41 41 H 1.09002 * 109.52548 * 62.24633 * 8 7 6 42 42 H 1.09001 * 109.52751 * 182.43932 * 8 7 6 43 43 H 1.08998 * 109.50265 * 297.71234 * 9 8 7 44 44 H 1.09001 * 109.50419 * 177.59326 * 9 8 7 45 45 H 0.96996 * 120.00215 * 359.97438 * 14 12 10 46 46 H 1.08996 * 109.47380 * 299.99848 * 15 14 12 47 47 H 1.09006 * 109.47362 * 59.99904 * 15 14 12 48 48 H 1.09000 * 112.94599 * 43.40589 * 16 15 14 49 49 H 1.09003 * 113.76680 * 336.35068 * 17 16 15 50 50 H 1.08994 * 113.76847 * 107.74273 * 17 16 15 51 51 H 0.97000 * 120.00147 * 179.97438 * 22 21 19 52 52 H 1.08999 * 113.77075 * 221.06226 * 27 18 17 53 53 H 1.09002 * 113.77087 * 89.65621 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.8413 3.4623 -1.3060 7 6 4.2277 4.9410 -1.2269 8 6 5.6995 5.0579 -0.8214 9 6 5.9097 4.3470 0.5184 10 6 5.4746 2.8856 0.3887 11 1 6.0805 2.3925 -0.3715 12 6 5.6612 2.1869 1.7108 13 8 4.7535 2.1573 2.5146 14 7 6.8369 1.5949 2.0001 15 6 7.0186 0.9161 3.2856 16 6 8.4313 0.3335 3.3596 17 6 8.5460 -1.0894 2.7832 18 7 9.4041 -1.3837 3.9474 19 6 10.3913 -2.2968 4.2054 20 1 10.8802 -2.3058 5.1684 21 6 10.7632 -3.2114 3.2297 22 7 10.1671 -3.2006 2.0563 23 14 12.1096 -4.4574 3.5820 24 1 11.5074 -5.6883 4.1542 25 1 12.8163 -4.7927 2.3198 26 1 13.0753 -3.8817 4.5522 27 6 8.7706 -0.2987 4.7217 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9288 0.8908 37 1 2.7899 3.3759 -1.5805 38 1 4.4548 2.9663 -2.0581 39 1 4.0801 5.4082 -2.2006 40 1 3.6050 5.4406 -0.4848 41 1 6.3252 4.5923 -1.5829 42 1 5.9675 6.1097 -0.7217 43 1 5.3135 4.8373 1.2879 44 1 6.9641 4.3899 0.7916 45 1 7.5629 1.6182 1.3572 46 1 6.8767 1.6302 4.0967 47 1 6.2889 0.1116 3.3780 48 1 9.1940 1.0203 2.9923 49 1 7.6050 -1.6395 2.7807 50 1 9.0698 -1.1358 1.8285 51 1 10.4272 -3.8395 1.3743 52 1 9.4737 0.2863 5.3146 53 1 7.8955 -0.6165 5.2886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032117721.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:38 Heat of formation + Delta-G solvation = -19.720527 kcal Electronic energy + Delta-G solvation = -28254.674276 eV Core-core repulsion = 24547.257726 eV Total energy + Delta-G solvation = -3707.416551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46900 -39.96494 -38.92500 -36.55547 -35.70599 -34.19182 -33.88338 -32.33498 -30.45926 -29.54769 -27.74662 -26.56372 -25.64187 -24.87623 -23.66149 -23.06740 -21.73655 -21.61714 -20.85813 -20.36375 -18.77352 -18.16731 -17.45150 -17.00516 -16.69746 -16.49094 -16.24962 -15.74783 -15.64761 -15.45820 -15.15356 -14.89045 -14.72615 -14.49098 -14.27672 -14.13395 -13.98853 -13.66146 -13.41662 -13.28180 -13.17497 -13.11692 -12.89137 -12.53849 -12.38319 -12.26025 -12.22331 -12.06762 -11.87874 -11.83470 -11.76256 -11.62182 -11.59588 -11.43434 -11.27249 -11.12432 -10.88585 -10.57335 -10.03431 -9.28930 -8.93306 -7.91910 -5.25293 1.44719 1.46627 1.55214 1.61825 2.10277 2.46479 2.85970 3.28785 3.38442 3.62058 3.76228 3.84285 3.92062 3.98095 4.07005 4.09479 4.12321 4.23318 4.28928 4.33022 4.35062 4.37146 4.57866 4.59003 4.62005 4.69765 4.76387 4.79701 4.83019 4.84329 4.86468 4.92213 4.95562 5.01280 5.06158 5.08569 5.11937 5.20732 5.23609 5.24130 5.29401 5.37895 5.43067 5.44865 5.49992 5.53672 5.63700 5.93015 5.98010 6.14323 6.60127 6.91335 7.27604 7.59581 8.55292 9.24877 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.002639 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.548004 B =10607.137959 C =11642.812750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.099 4.099 4 C 0.052 3.948 5 N -0.529 5.529 6 C 0.053 3.947 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.103 4.103 10 C 0.073 3.927 11 H 0.070 0.930 12 C 0.513 3.487 13 O -0.564 6.564 14 N -0.717 5.717 15 C 0.145 3.855 16 C -0.113 4.113 17 C 0.167 3.833 18 N -0.645 5.645 19 C -0.236 4.236 20 H 0.083 0.917 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.979 3.021 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.125 3.875 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.411 0.589 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.106 0.894 49 H 0.008 0.992 50 H 0.044 0.956 51 H 0.248 0.752 52 H 0.063 0.937 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 17.595 -9.847 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.076 4.076 5 N -0.255 5.255 6 C -0.074 4.074 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.141 4.141 10 C -0.038 4.038 11 H 0.088 0.912 12 C 0.300 3.700 13 O -0.443 6.443 14 N -0.369 5.369 15 C 0.020 3.980 16 C -0.133 4.133 17 C 0.041 3.959 18 N -0.371 5.371 19 C -0.365 4.365 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.000 4.000 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.247 0.753 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.124 0.876 49 H 0.026 0.974 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.081 0.919 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.537 17.582 -8.960 24.510 hybrid contribution 1.405 -1.874 -0.444 2.384 sum -13.132 15.707 -9.404 22.530 Atomic orbital electron populations 1.21723 0.94594 1.01991 1.02111 1.21496 0.96958 0.96384 1.01517 1.21436 0.93255 0.96758 1.02244 1.22178 0.97048 0.88500 0.99859 1.61698 1.15569 1.17671 1.30530 1.22275 1.01949 0.95454 0.87708 1.21613 0.96422 0.94759 1.02510 1.21577 0.96835 1.01287 0.95569 1.21543 1.01631 0.91223 0.99695 1.21644 0.90969 0.98331 0.92894 0.91181 1.20913 0.81710 0.78061 0.89339 1.90679 1.42044 1.60514 1.51019 1.46040 1.15598 1.55436 1.19860 1.21138 0.95543 0.95717 0.85613 1.23399 0.95644 0.96203 0.98025 1.22219 0.91233 0.90013 0.92416 1.46363 1.38860 1.37892 1.13995 1.19444 1.09565 1.08587 0.98875 0.89883 1.25628 1.02635 1.01609 0.96195 1.69997 1.45636 1.39280 1.05273 0.85075 0.78677 0.78771 0.76792 1.21607 1.21888 1.19161 1.22703 0.95450 0.87976 0.93873 0.91748 0.92319 0.93000 0.91701 0.93591 0.92720 0.90732 0.94606 0.92997 0.89593 0.94299 0.89374 0.91835 0.91060 0.89920 0.91986 0.89826 0.75275 0.90806 0.93341 0.87611 0.97383 0.93716 0.94286 0.91866 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.13 -2.47 5.93 30.59 0.18 -2.29 16 3 C -0.10 -2.06 5.27 30.59 0.16 -1.90 16 4 C 0.05 1.24 4.60 86.30 0.40 1.64 16 5 N -0.53 -11.68 4.21 -875.50 -3.68 -15.37 16 6 C 0.05 0.84 5.30 86.32 0.46 1.30 16 7 C -0.12 -1.48 6.09 30.64 0.19 -1.29 16 8 C -0.12 -1.44 6.00 30.67 0.18 -1.25 16 9 C -0.10 -1.78 5.36 30.65 0.16 -1.61 16 10 C 0.07 1.58 2.23 44.19 0.10 1.68 16 11 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 12 C 0.51 14.44 5.67 87.66 0.50 14.93 16 13 O -0.56 -20.39 15.40 -3.03 -0.05 -20.43 16 14 N -0.72 -18.88 5.56 -463.06 -2.57 -21.45 16 15 C 0.14 4.38 5.53 86.38 0.48 4.86 16 16 C -0.11 -3.89 3.94 -10.13 -0.04 -3.93 16 17 C 0.17 7.77 7.07 86.48 0.61 8.38 16 18 N -0.64 -33.07 3.70 -716.66 -2.65 -35.72 16 19 C -0.24 -13.34 10.70 84.03 0.90 -12.44 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.95 -57.42 11.38 21.65 0.25 -57.17 16 23 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C 0.13 4.90 8.50 86.48 0.74 5.63 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.28 6.67 -2.39 -0.02 1.27 16 35 H 0.04 0.80 8.05 -2.38 -0.02 0.78 16 36 H 0.05 1.58 5.69 -2.39 -0.01 1.56 16 37 H 0.09 1.25 6.52 -2.38 -0.02 1.23 16 38 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.41 9.08 8.47 -92.71 -0.79 8.29 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.68 7.83 -2.38 -0.02 1.66 16 48 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.01 0.41 7.89 -2.39 -0.02 0.40 16 50 H 0.04 2.31 7.15 -2.39 -0.02 2.29 16 51 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 52 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 Total: -1.00 -71.20 409.68 -0.41 -71.61 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.07 Total: 22.11 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.19 Total: 8.62 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -8.66 Total: -129.72 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.20 -0.41 -71.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032117721.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.892 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds