Wall clock time and date at job start Tue Mar 31 2020 14:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 N 1.46905 * 109.47459 * 180.02562 * 3 2 1 5 5 C 1.46843 * 110.99731 * 65.79079 * 4 3 2 6 6 C 1.53040 * 109.52167 * 185.84063 * 5 4 3 7 7 C 1.53123 * 109.30890 * 300.84119 * 6 5 4 8 8 C 1.53117 * 109.15697 * 57.59780 * 7 6 5 9 9 H 1.09003 * 109.50895 * 62.36219 * 8 7 6 10 10 C 1.50700 * 109.50243 * 182.44055 * 8 7 6 11 11 O 1.21277 * 119.99959 * 100.83918 * 10 8 7 12 12 N 1.34777 * 120.00164 * 280.84155 * 10 8 7 13 13 C 1.46502 * 120.00040 * 185.05826 * 12 10 8 14 14 C 1.46503 * 119.99818 * 5.33339 * 12 10 8 15 15 H 1.09001 * 110.88467 * 2.05237 * 14 12 10 16 16 C 1.55157 * 111.00316 * 125.93829 * 14 12 10 17 17 C 1.54330 * 102.94087 * 153.57686 * 16 14 12 18 18 N 1.47024 * 107.26939 * 337.80343 * 17 16 14 19 19 C 1.36936 * 125.64780 * 178.96117 * 18 17 16 20 20 H 1.07999 * 120.00313 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99699 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00240 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99700 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47423 * 59.99669 * 23 21 19 25 25 H 1.48505 * 109.46822 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46811 * 299.99554 * 23 21 19 27 27 C 1.47422 * 108.70428 * 358.94230 * 18 17 16 28 28 C 1.46838 * 110.99943 * 190.00285 * 4 3 2 29 29 H 1.08997 * 109.47228 * 59.99894 * 1 2 3 30 30 H 1.09001 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47190 * 299.99115 * 1 2 3 32 32 H 1.09007 * 109.47358 * 240.00334 * 2 1 3 33 33 H 1.09003 * 109.47618 * 120.00236 * 2 1 3 34 34 H 1.09004 * 109.46757 * 60.00469 * 3 2 1 35 35 H 1.08997 * 109.47147 * 300.00155 * 3 2 1 36 36 H 1.08999 * 109.46206 * 305.85490 * 5 4 3 37 37 H 1.08995 * 109.46593 * 65.83659 * 5 4 3 38 38 H 1.09005 * 109.50351 * 60.76584 * 6 5 4 39 39 H 1.09001 * 109.50086 * 180.83914 * 6 5 4 40 40 H 1.08993 * 109.49299 * 297.70763 * 7 6 5 41 41 H 1.09000 * 109.54945 * 177.51898 * 7 6 5 42 42 H 1.08998 * 109.47173 * 275.61614 * 13 12 10 43 43 H 1.08999 * 109.47218 * 35.61783 * 13 12 10 44 44 H 1.09000 * 109.46656 * 155.61865 * 13 12 10 45 45 H 1.08998 * 110.71922 * 271.93732 * 16 14 12 46 46 H 1.08998 * 110.72157 * 35.03760 * 16 14 12 47 47 H 1.08994 * 109.88526 * 97.22120 * 17 16 14 48 48 H 1.09002 * 109.88095 * 218.23789 * 17 16 14 49 49 H 0.96997 * 119.99620 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.36916 * 265.28766 * 27 18 17 51 51 H 1.09001 * 110.36695 * 142.96376 * 27 18 17 52 52 H 1.09003 * 109.46626 * 54.15103 * 28 4 3 53 53 H 1.08997 * 109.46382 * 294.17171 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0347 0.8806 -1.2513 6 6 5.5576 0.7619 -1.1583 7 6 6.1591 2.1474 -0.9068 8 6 5.5582 2.7309 0.3749 9 1 5.8217 2.0973 1.2218 10 6 6.0999 4.1194 0.5978 11 8 5.4281 5.0863 0.3069 12 7 7.3310 4.2867 1.1203 13 6 7.8143 5.6322 1.4401 14 6 8.1880 3.1236 1.3628 15 1 7.6995 2.2059 1.0352 16 6 9.5675 3.2959 0.6738 17 6 10.4986 2.4231 1.5415 18 7 9.8591 2.2770 2.8572 19 6 10.3558 1.5566 3.9105 20 1 9.8079 1.5114 4.8401 21 6 11.5637 0.8844 3.7833 22 7 12.2312 0.9391 2.6503 23 14 12.2410 -0.0990 5.2199 24 1 11.2749 -1.1641 5.5900 25 1 13.5338 -0.7174 4.8307 26 1 12.4526 0.8025 6.3808 27 6 8.5946 3.0350 2.8550 28 6 4.0352 2.7926 0.2375 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.6766 1.9562 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 3.6028 -0.1066 -1.4156 37 1 3.7717 1.5350 -2.0823 38 1 5.8212 0.0966 -0.3360 39 1 5.9489 0.3586 -2.0923 40 1 5.9292 2.8017 -1.7477 41 1 7.2400 2.0611 -0.7960 42 1 8.2358 6.0892 0.5447 43 1 6.9849 6.2398 1.8021 44 1 8.5820 5.5687 2.2113 45 1 9.5358 2.9254 -0.3508 46 1 9.8817 4.3394 0.6955 47 1 10.6251 1.4438 1.0800 48 1 11.4680 2.9097 1.6499 49 1 13.0750 0.4691 2.5614 50 1 8.7495 4.0326 3.2658 51 1 7.8326 2.5032 3.4248 52 1 3.6038 3.1941 1.1545 53 1 3.7721 3.4380 -0.6006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033355083.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:53 Heat of formation + Delta-G solvation = -12.334637 kcal Electronic energy + Delta-G solvation = -29158.586966 eV Core-core repulsion = 25451.490692 eV Total energy + Delta-G solvation = -3707.096275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.47747 -38.69462 -37.47808 -35.12488 -34.61785 -32.16060 -31.98521 -31.23725 -29.23696 -27.68389 -26.95384 -26.37651 -24.57617 -23.81678 -23.06732 -21.41574 -20.69651 -20.20475 -19.97959 -18.50874 -17.27631 -17.00573 -16.17111 -15.63004 -15.53032 -15.11422 -14.71699 -14.70745 -14.37497 -14.19524 -14.07571 -13.70027 -13.65209 -13.16144 -12.87830 -12.75076 -12.55011 -12.34060 -12.27560 -12.07235 -11.92011 -11.88517 -11.83715 -11.36989 -11.33410 -11.14500 -10.99093 -10.93312 -10.80456 -10.75841 -10.63869 -10.43081 -10.31597 -10.15218 -9.95888 -9.76011 -9.44213 -8.66481 -8.44327 -8.36868 -6.89583 -5.75971 -3.10387 2.74373 3.11837 3.38775 3.43339 3.44208 3.75308 4.44593 4.53299 4.61034 4.74493 4.79650 4.85295 4.95351 5.10499 5.10869 5.20822 5.24343 5.26818 5.34498 5.42266 5.46364 5.50563 5.51806 5.54763 5.60510 5.61934 5.62597 5.67539 5.76309 5.77036 5.81945 5.84882 5.94200 5.95552 5.98237 6.05285 6.07696 6.16218 6.22851 6.26848 6.40361 6.51291 6.65611 6.79036 6.94311 6.96085 7.49777 7.53021 7.61288 7.77095 8.19316 8.32317 9.16464 9.76304 10.40624 11.35458 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.003194 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.929003 B = 8764.907430 C = 9906.554091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.539 5.539 5 C 0.052 3.948 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.105 0.895 10 C 0.521 3.479 11 O -0.553 6.553 12 N -0.598 5.598 13 C 0.086 3.914 14 C 0.113 3.887 15 H 0.104 0.896 16 C -0.153 4.153 17 C 0.179 3.821 18 N -0.602 5.602 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.128 3.872 28 C 0.079 3.921 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.045 0.955 49 H 0.253 0.747 50 H 0.024 0.976 51 H 0.042 0.958 52 H 0.077 0.923 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 1.230 -8.574 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.071 4.071 4 N -0.264 5.264 5 C -0.076 4.076 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.126 4.126 9 H 0.123 0.877 10 C 0.309 3.691 11 O -0.432 6.432 12 N -0.329 5.329 13 C -0.057 4.057 14 C 0.008 3.992 15 H 0.122 0.878 16 C -0.192 4.192 17 C 0.054 3.946 18 N -0.329 5.329 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.001 3.999 28 C -0.049 4.049 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.061 0.939 52 H 0.095 0.905 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.225 1.322 -8.292 19.162 hybrid contribution 0.340 0.037 0.127 0.365 sum -16.884 1.358 -8.165 18.804 Atomic orbital electron populations 1.21737 0.95743 1.01707 1.01721 1.21554 0.95229 0.96396 1.02795 1.22119 0.86922 0.97224 1.00829 1.61866 1.07278 1.22107 1.35133 1.22173 0.95707 0.99755 0.89940 1.21583 0.94146 0.96948 1.02638 1.21617 1.00843 0.96768 0.95872 1.21313 0.96024 0.94203 1.01042 0.87699 1.20516 0.80898 0.91103 0.76579 1.90646 1.58657 1.42349 1.51529 1.47851 1.15077 1.07941 1.62053 1.21593 1.00249 0.83055 1.00783 1.22691 0.90903 0.87472 0.98105 0.87782 1.23255 0.95253 1.01265 0.99429 1.21147 0.93006 0.96754 0.83659 1.44365 1.19447 1.57424 1.11665 1.18999 1.02727 1.22732 0.91366 0.90410 1.24801 0.97431 1.00578 0.97426 1.69937 1.16283 1.46747 1.23956 0.86190 0.78176 0.79882 0.81450 1.21076 1.21586 1.21160 1.21802 0.89851 0.95648 0.92628 1.21774 0.92897 0.88563 1.01679 0.92980 0.92568 0.92645 0.91978 0.90960 0.90755 0.95024 0.90400 0.95047 0.90432 0.91023 0.91786 0.90442 0.93050 0.91382 0.90307 0.91897 0.91864 0.93234 0.93664 0.93625 0.95832 0.93928 0.90499 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.15 0.37 -0.66 16 2 C -0.12 -0.99 5.86 -26.74 -0.16 -1.15 16 3 C 0.06 0.54 4.96 -3.82 -0.02 0.52 16 4 N -0.54 -5.96 4.66 -234.68 -1.09 -7.06 16 5 C 0.05 0.52 5.29 -3.83 -0.02 0.50 16 6 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 7 C -0.11 -1.34 4.96 -26.61 -0.13 -1.47 16 8 C -0.10 -1.37 1.81 -91.69 -0.17 -1.54 16 9 H 0.10 1.44 7.01 -51.93 -0.36 1.07 16 10 C 0.52 8.07 6.85 -10.99 -0.08 7.99 16 11 O -0.55 -9.92 15.74 5.56 0.09 -9.84 16 12 N -0.60 -9.14 2.91 -171.48 -0.50 -9.64 16 13 C 0.09 1.21 8.95 59.85 0.54 1.75 16 14 C 0.11 1.85 2.69 -65.78 -0.18 1.68 16 15 H 0.10 1.66 4.59 -51.93 -0.24 1.43 16 16 C -0.15 -2.67 6.51 -24.89 -0.16 -2.84 16 17 C 0.18 4.11 5.37 -3.06 -0.02 4.09 16 18 N -0.60 -14.65 3.39 -170.07 -0.58 -15.23 16 19 C -0.23 -6.21 10.28 -15.06 -0.15 -6.36 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -26.25 10.31 55.49 0.57 -25.68 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.13 2.52 6.79 -2.53 -0.02 2.50 16 28 C 0.08 0.99 4.22 -3.84 -0.02 0.97 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 35 H 0.03 0.30 8.12 -51.93 -0.42 -0.13 16 36 H 0.08 0.69 6.21 -51.93 -0.32 0.37 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.96 6.44 -51.93 -0.33 0.63 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 44 H 0.08 1.10 6.33 -51.93 -0.33 0.78 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.06 7.08 -51.93 -0.37 0.69 16 47 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 48 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.02 0.47 6.32 -51.93 -0.33 0.14 16 51 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 53 H 0.04 0.59 7.88 -51.93 -0.41 0.18 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -30.02 394.61 -10.70 -40.72 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.65 Total: -0.18 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.47 Total: 4.36 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -1.60 Total: -57.60 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.02 -10.70 -40.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033355083.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.390 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds