Wall clock time and date at job start Tue Mar 31 2020 14:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47218 * 2 1 4 4 N 1.46904 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.47440 * 110.99676 * 290.12754 * 4 3 2 6 6 C 1.54317 * 107.23368 * 236.73977 * 5 4 3 7 7 C 1.55144 * 103.01861 * 337.71644 * 6 5 4 8 8 C 1.47842 * 111.00238 * 169.28143 * 4 3 2 9 9 H 1.09002 * 110.37256 * 27.42242 * 8 4 3 10 10 C 1.50697 * 110.37180 * 265.19063 * 8 4 3 11 11 O 1.21282 * 120.00546 * 0.02562 * 10 8 4 12 12 N 1.34784 * 119.99687 * 179.97438 * 10 8 4 13 13 C 1.46499 * 119.99727 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.47497 * 324.99539 * 13 12 10 15 15 C 1.52999 * 109.47462 * 85.00132 * 13 12 10 16 16 C 1.52993 * 109.47274 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47304 * 299.99867 * 16 15 13 18 18 H 1.08994 * 109.46964 * 300.00322 * 17 16 15 19 19 N 1.46501 * 109.46987 * 179.97438 * 17 16 15 20 20 C 1.36945 * 119.99564 * 85.00454 * 19 17 16 21 21 H 1.07995 * 119.99872 * 0.02562 * 20 19 17 22 22 C 1.38807 * 119.99864 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00085 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46706 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47186 * 120.00193 * 24 22 20 27 27 H 1.48505 * 109.47119 * 240.00466 * 24 22 20 28 28 C 1.53006 * 109.46806 * 60.00120 * 17 16 15 29 29 C 1.52993 * 109.47091 * 300.00010 * 28 17 16 30 30 H 1.08994 * 109.47213 * 60.00376 * 1 2 3 31 31 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46948 * 300.00070 * 1 2 3 33 33 H 1.09004 * 109.47273 * 239.99676 * 2 1 3 34 34 H 1.09006 * 109.47039 * 120.00298 * 2 1 3 35 35 H 1.08998 * 109.47219 * 60.00095 * 3 2 1 36 36 H 1.09006 * 109.47359 * 300.00102 * 3 2 1 37 37 H 1.09000 * 109.89463 * 117.33566 * 5 4 3 38 38 H 1.09000 * 109.88994 * 356.14383 * 5 4 3 39 39 H 1.08999 * 110.70846 * 96.09223 * 6 5 4 40 40 H 1.09000 * 110.71111 * 219.33808 * 6 5 4 41 41 H 1.09002 * 110.99593 * 153.74641 * 7 6 5 42 42 H 1.09000 * 110.99290 * 277.56635 * 7 6 5 43 43 H 0.97000 * 119.99768 * 0.02562 * 12 10 8 44 44 H 1.09002 * 109.47015 * 299.99977 * 15 13 12 45 45 H 1.09008 * 109.46889 * 59.99512 * 15 13 12 46 46 H 1.09005 * 109.47208 * 180.02562 * 16 15 13 47 47 H 1.09000 * 109.47343 * 60.00398 * 16 15 13 48 48 H 0.96999 * 120.00452 * 265.00384 * 19 17 16 49 49 H 0.97003 * 120.00073 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.46884 * 179.97438 * 28 17 16 51 51 H 1.09000 * 109.46835 * 60.00086 * 28 17 16 52 52 H 1.09000 * 109.47343 * 299.99764 * 29 28 17 53 53 H 1.09005 * 109.47208 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0379 0.9686 1.2915 6 6 4.9566 2.0785 1.8442 7 6 5.3450 2.8766 0.5717 8 6 4.0388 2.7986 -0.2573 9 1 3.3281 3.5536 0.0791 10 6 4.3367 2.9765 -1.7238 11 8 4.1319 2.0666 -2.4991 12 7 4.8299 4.1473 -2.1740 13 6 5.1191 4.3205 -3.5997 14 1 5.4796 3.3791 -4.0144 15 6 3.8439 4.7447 -4.3310 16 6 4.1460 4.9262 -5.8198 17 6 5.2172 6.0045 -5.9951 18 1 4.8565 6.9457 -5.5802 19 7 5.5069 6.1778 -7.4207 20 6 4.7303 7.0112 -8.1808 21 1 3.9047 7.5409 -7.7292 22 6 5.0051 7.1758 -9.5314 23 7 6.0117 6.5305 -10.0816 24 14 3.9463 8.3131 -10.5682 25 1 2.8879 8.9154 -9.7183 26 1 4.7921 9.3902 -11.1423 27 1 3.3174 7.5382 -11.6679 28 6 6.4925 5.5802 -5.2639 29 6 6.1903 5.3988 -3.7751 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 4.6102 0.0526 1.1446 38 1 3.2163 0.7880 1.9847 39 1 4.4154 2.7127 2.5465 40 1 5.8410 1.6484 2.3142 41 1 5.5899 3.9097 0.8183 42 1 6.1702 2.3961 0.0462 43 1 4.9934 4.8752 -1.5540 44 1 3.0806 3.9767 -4.2057 45 1 3.4834 5.6862 -3.9163 46 1 3.2376 5.2289 -6.3406 47 1 4.5066 3.9849 -6.2347 48 1 6.2487 5.7022 -7.8262 49 1 6.2034 6.6452 -11.0256 50 1 7.2557 6.3482 -5.3892 51 1 6.8531 4.6390 -5.6788 52 1 5.8297 6.3400 -3.3602 53 1 7.0989 5.0969 -3.2541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034658860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:08 Heat of formation + Delta-G solvation = -43.574330 kcal Electronic energy + Delta-G solvation = -28127.172533 eV Core-core repulsion = 24418.721604 eV Total energy + Delta-G solvation = -3708.450929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46803 -38.92389 -37.52749 -34.87231 -34.69803 -32.97875 -31.07367 -30.83992 -30.36559 -29.61666 -27.15003 -25.81593 -23.81420 -22.77939 -22.33522 -22.18021 -20.93766 -20.50121 -20.11268 -19.30779 -17.52678 -16.97534 -16.72605 -15.95008 -15.68973 -15.15340 -14.89704 -14.73522 -14.34529 -13.93808 -13.81411 -13.58540 -13.50046 -13.44102 -13.12014 -13.06601 -12.92129 -12.53512 -12.11676 -12.04959 -11.95361 -11.76592 -11.61391 -11.59041 -11.38786 -11.17414 -11.16715 -10.97072 -10.87463 -10.80080 -10.71794 -10.62726 -10.12514 -10.06162 -9.73099 -9.70561 -9.52077 -8.89156 -8.80378 -8.57501 -6.90806 -5.72895 -3.01159 2.70057 2.96385 3.45292 3.50770 3.53068 3.73568 4.16123 4.24667 4.50182 4.61853 4.71379 4.74916 4.78468 4.83991 4.97594 5.05492 5.10153 5.11872 5.16453 5.31495 5.33203 5.36253 5.41583 5.45340 5.49493 5.55554 5.60222 5.66517 5.72621 5.76960 5.78080 5.79625 5.90590 5.92414 5.94745 6.04848 6.07506 6.28249 6.32782 6.36188 6.52710 6.56914 6.62308 6.73291 6.76301 6.78087 7.03192 7.19329 7.58261 7.74075 8.34723 8.46109 9.56988 10.16075 10.50545 11.50002 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002284 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.636573 B =12255.967754 C =13204.963028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.507 5.507 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.118 4.118 8 C 0.053 3.947 9 H 0.078 0.922 10 C 0.518 3.482 11 O -0.514 6.514 12 N -0.729 5.729 13 C 0.147 3.853 14 H 0.086 0.914 15 C -0.123 4.123 16 C -0.132 4.132 17 C 0.178 3.822 18 H 0.045 0.955 19 N -0.726 5.726 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.121 4.121 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.394 0.606 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.064 0.936 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -8.795 28.844 30.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.231 5.231 5 C -0.085 4.085 6 C -0.180 4.180 7 C -0.156 4.156 8 C -0.059 4.059 9 H 0.095 0.905 10 C 0.302 3.698 11 O -0.387 6.387 12 N -0.381 5.381 13 C 0.044 3.956 14 H 0.104 0.896 15 C -0.162 4.162 16 C -0.173 4.173 17 C 0.068 3.932 18 H 0.063 0.937 19 N -0.366 5.366 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.159 4.159 29 C -0.156 4.156 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.228 0.772 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.083 0.917 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.970 -9.689 27.787 29.694 hybrid contribution -0.639 1.366 0.119 1.513 sum -4.610 -8.323 27.906 29.483 Atomic orbital electron populations 1.21740 0.95656 1.01796 1.01735 1.21486 0.95235 0.96076 1.02795 1.22322 0.86645 0.97776 1.00556 1.63075 1.07957 1.21085 1.30962 1.22886 0.97949 0.98562 0.89069 1.22800 1.00261 0.97599 0.97323 1.22677 0.96323 1.01275 0.95366 1.22502 0.97724 0.92081 0.93568 0.90467 1.20295 0.77442 0.82310 0.89719 1.90717 1.50311 1.40513 1.57186 1.46159 1.66877 1.15178 1.09886 1.21064 0.95533 0.99749 0.79291 0.89558 1.21886 0.96754 1.00575 0.96986 1.22218 1.01272 1.00899 0.92902 1.20236 0.91716 0.95274 0.86001 0.93665 1.42447 1.36818 1.53942 1.03412 1.19286 1.08505 1.18028 0.90801 0.91205 1.24739 0.98722 1.00729 0.96969 1.69672 1.30695 1.46045 1.11785 0.86144 0.79540 0.80189 0.80500 1.20612 1.21943 1.21917 1.21751 0.99371 1.01850 0.92975 1.21739 0.97648 0.98080 0.98170 0.92508 0.92495 0.93063 0.90746 0.92251 0.94947 0.90739 0.90221 0.92357 0.91232 0.90249 0.89976 0.89910 0.77249 0.92488 0.92470 0.91901 0.92503 0.78309 0.93621 0.91425 0.91982 0.91682 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.01 5.96 -26.73 -0.16 -1.17 16 3 C 0.05 0.51 4.53 -3.83 -0.02 0.49 16 4 N -0.51 -5.10 4.34 -224.76 -0.97 -6.08 16 5 C 0.04 0.32 6.21 -2.84 -0.02 0.30 16 6 C -0.14 -0.82 6.94 -24.91 -0.17 -0.99 16 7 C -0.12 -0.81 6.47 -24.59 -0.16 -0.97 16 8 C 0.05 0.49 2.80 -67.34 -0.19 0.30 16 9 H 0.08 0.60 7.81 -51.93 -0.41 0.20 16 10 C 0.52 6.51 7.15 -10.98 -0.08 6.44 16 11 O -0.51 -8.90 16.15 5.56 0.09 -8.81 16 12 N -0.73 -7.89 5.06 -53.80 -0.27 -8.16 16 13 C 0.15 1.98 2.45 -67.93 -0.17 1.81 16 14 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 15 C -0.12 -1.86 5.49 -26.74 -0.15 -2.01 16 16 C -0.13 -2.45 5.50 -26.73 -0.15 -2.60 16 17 C 0.18 3.50 2.77 -67.92 -0.19 3.31 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 N -0.73 -18.32 5.12 -53.42 -0.27 -18.60 16 20 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 24 Si 0.90 22.64 29.55 -169.99 -5.02 17.61 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C -0.12 -1.95 5.39 -26.73 -0.14 -2.09 16 29 C -0.12 -1.46 5.39 -26.73 -0.14 -1.61 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.46 7.14 -51.93 -0.37 0.08 16 35 H 0.03 0.26 7.96 -51.93 -0.41 -0.16 16 36 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.38 6.91 -51.93 -0.36 0.02 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.67 8.05 -51.93 -0.42 0.26 16 43 H 0.39 3.04 8.60 -40.82 -0.35 2.69 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.38 10.31 7.80 -40.82 -0.32 9.99 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 53 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 411.42 15.07 6.20 6.20 Total: -1.00 -33.18 411.42 -11.32 -44.50 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -10.18 Total: 7.91 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.61 Total: -6.77 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.80 Total: -60.63 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.18 -11.32 -44.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034658860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.925 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds