Wall clock time and date at job start Tue Mar 31 2020 14:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47218 * 2 1 4 4 N 1.46904 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.47440 * 110.99676 * 290.12754 * 4 3 2 6 6 C 1.54317 * 107.23368 * 236.73977 * 5 4 3 7 7 C 1.55144 * 103.01861 * 337.71644 * 6 5 4 8 8 C 1.47842 * 111.00238 * 169.28143 * 4 3 2 9 9 H 1.09002 * 110.37256 * 27.42242 * 8 4 3 10 10 C 1.50697 * 110.37180 * 265.19063 * 8 4 3 11 11 O 1.21282 * 120.00546 * 0.02562 * 10 8 4 12 12 N 1.34784 * 119.99687 * 179.97438 * 10 8 4 13 13 C 1.46499 * 119.99727 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.47497 * 324.99539 * 13 12 10 15 15 C 1.52999 * 109.47462 * 85.00132 * 13 12 10 16 16 C 1.52993 * 109.47274 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47304 * 299.99867 * 16 15 13 18 18 H 1.08994 * 109.46964 * 300.00322 * 17 16 15 19 19 N 1.46501 * 109.46987 * 179.97438 * 17 16 15 20 20 C 1.36945 * 119.99564 * 85.00454 * 19 17 16 21 21 H 1.07995 * 119.99872 * 0.02562 * 20 19 17 22 22 C 1.38807 * 119.99864 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00072 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00085 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46706 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47186 * 120.00193 * 24 22 20 27 27 H 1.48505 * 109.47119 * 240.00466 * 24 22 20 28 28 C 1.53006 * 109.46806 * 60.00120 * 17 16 15 29 29 C 1.52993 * 109.47091 * 300.00010 * 28 17 16 30 30 H 1.08994 * 109.47213 * 60.00376 * 1 2 3 31 31 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46948 * 300.00070 * 1 2 3 33 33 H 1.09004 * 109.47273 * 239.99676 * 2 1 3 34 34 H 1.09006 * 109.47039 * 120.00298 * 2 1 3 35 35 H 1.08998 * 109.47219 * 60.00095 * 3 2 1 36 36 H 1.09006 * 109.47359 * 300.00102 * 3 2 1 37 37 H 1.09000 * 109.89463 * 117.33566 * 5 4 3 38 38 H 1.09000 * 109.88994 * 356.14383 * 5 4 3 39 39 H 1.08999 * 110.70846 * 96.09223 * 6 5 4 40 40 H 1.09000 * 110.71111 * 219.33808 * 6 5 4 41 41 H 1.09002 * 110.99593 * 153.74641 * 7 6 5 42 42 H 1.09000 * 110.99290 * 277.56635 * 7 6 5 43 43 H 0.97000 * 119.99768 * 0.02562 * 12 10 8 44 44 H 1.09002 * 109.47015 * 299.99977 * 15 13 12 45 45 H 1.09008 * 109.46889 * 59.99512 * 15 13 12 46 46 H 1.09005 * 109.47208 * 180.02562 * 16 15 13 47 47 H 1.09000 * 109.47343 * 60.00398 * 16 15 13 48 48 H 0.96999 * 120.00452 * 265.00384 * 19 17 16 49 49 H 0.97003 * 120.00073 * 179.97438 * 23 22 20 50 50 H 1.08993 * 109.46884 * 179.97438 * 28 17 16 51 51 H 1.09000 * 109.46835 * 60.00086 * 28 17 16 52 52 H 1.09000 * 109.47343 * 299.99764 * 29 28 17 53 53 H 1.09005 * 109.47208 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0379 0.9686 1.2915 6 6 4.9566 2.0785 1.8442 7 6 5.3450 2.8766 0.5717 8 6 4.0388 2.7986 -0.2573 9 1 3.3281 3.5536 0.0791 10 6 4.3367 2.9765 -1.7238 11 8 4.1319 2.0666 -2.4991 12 7 4.8299 4.1473 -2.1740 13 6 5.1191 4.3205 -3.5997 14 1 5.4796 3.3791 -4.0144 15 6 3.8439 4.7447 -4.3310 16 6 4.1460 4.9262 -5.8198 17 6 5.2172 6.0045 -5.9951 18 1 4.8565 6.9457 -5.5802 19 7 5.5069 6.1778 -7.4207 20 6 4.7303 7.0112 -8.1808 21 1 3.9047 7.5409 -7.7292 22 6 5.0051 7.1758 -9.5314 23 7 6.0117 6.5305 -10.0816 24 14 3.9463 8.3131 -10.5682 25 1 2.8879 8.9154 -9.7183 26 1 4.7921 9.3902 -11.1423 27 1 3.3174 7.5382 -11.6679 28 6 6.4925 5.5802 -5.2639 29 6 6.1903 5.3988 -3.7751 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 4.6102 0.0526 1.1446 38 1 3.2163 0.7880 1.9847 39 1 4.4154 2.7127 2.5465 40 1 5.8410 1.6484 2.3142 41 1 5.5899 3.9097 0.8183 42 1 6.1702 2.3961 0.0462 43 1 4.9934 4.8752 -1.5540 44 1 3.0806 3.9767 -4.2057 45 1 3.4834 5.6862 -3.9163 46 1 3.2376 5.2289 -6.3406 47 1 4.5066 3.9849 -6.2347 48 1 6.2487 5.7022 -7.8262 49 1 6.2034 6.6452 -11.0256 50 1 7.2557 6.3482 -5.3892 51 1 6.8531 4.6390 -5.6788 52 1 5.8297 6.3400 -3.3602 53 1 7.0989 5.0969 -3.2541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034658860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:07 Heat of formation + Delta-G solvation = -66.044079 kcal Electronic energy + Delta-G solvation = -28128.146895 eV Core-core repulsion = 24418.721604 eV Total energy + Delta-G solvation = -3709.425291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35985 -39.93658 -38.71374 -36.30752 -35.46963 -34.56808 -32.53062 -31.68872 -31.64450 -30.58376 -28.61152 -26.45003 -25.62755 -23.91021 -23.48675 -22.86413 -22.16994 -21.27101 -21.13513 -20.56709 -19.12043 -18.24596 -17.54899 -16.99856 -16.77966 -16.42024 -16.05053 -15.59750 -15.49290 -15.34127 -15.11617 -15.01184 -14.67360 -14.30218 -14.10986 -13.92664 -13.71223 -13.65368 -13.43373 -13.14930 -13.08721 -12.87031 -12.76572 -12.67531 -12.39666 -12.31188 -12.24329 -12.09925 -12.07059 -12.02673 -11.79321 -11.67572 -11.63835 -11.54111 -11.45381 -11.19100 -10.86604 -10.65744 -9.95676 -9.24214 -8.99557 -7.93610 -5.21800 1.46261 1.47364 1.57108 1.74365 2.08678 2.56377 3.03282 3.39301 3.55843 3.65040 3.77329 3.83645 3.91417 3.96957 4.05149 4.11117 4.18084 4.23256 4.30749 4.37816 4.41215 4.45719 4.53163 4.54191 4.58391 4.60260 4.67112 4.72209 4.78422 4.86896 4.87667 4.94832 4.98192 5.01025 5.09706 5.12750 5.15304 5.16102 5.25785 5.27227 5.28109 5.34307 5.37289 5.49166 5.55224 5.59762 5.64618 5.94521 6.13609 6.29381 6.72179 7.34517 7.42560 8.12283 8.34573 9.30381 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002284 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.636573 B =12255.967754 C =13204.963028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.059 3.941 4 N -0.537 5.537 5 C 0.041 3.959 6 C -0.133 4.133 7 C -0.113 4.113 8 C 0.057 3.943 9 H 0.099 0.901 10 C 0.514 3.486 11 O -0.570 6.570 12 N -0.711 5.711 13 C 0.155 3.845 14 H 0.057 0.943 15 C -0.110 4.110 16 C -0.123 4.123 17 C 0.173 3.827 18 H 0.049 0.951 19 N -0.740 5.740 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.297 1.297 28 C -0.114 4.114 29 C -0.103 4.103 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.415 0.585 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.068 0.932 51 H 0.050 0.950 52 H 0.089 0.911 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.173 -7.246 32.456 33.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.069 4.069 4 N -0.262 5.262 5 C -0.086 4.086 6 C -0.171 4.171 7 C -0.152 4.152 8 C -0.055 4.055 9 H 0.116 0.884 10 C 0.301 3.699 11 O -0.448 6.448 12 N -0.364 5.364 13 C 0.050 3.950 14 H 0.076 0.924 15 C -0.149 4.149 16 C -0.164 4.164 17 C 0.065 3.935 18 H 0.067 0.933 19 N -0.379 5.379 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.224 1.224 28 C -0.153 4.153 29 C -0.142 4.142 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.252 0.748 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.202 0.798 49 H 0.059 0.941 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.108 0.892 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.312 -8.107 31.486 32.798 hybrid contribution -0.558 0.813 -0.975 1.386 sum -4.869 -7.294 30.511 31.747 Atomic orbital electron populations 1.21715 0.94622 1.02291 1.01943 1.21449 0.96120 0.95766 1.01936 1.22261 0.86588 0.97851 1.00221 1.62960 1.08354 1.22016 1.32856 1.22914 0.98618 0.98861 0.88245 1.22788 1.00410 0.96909 0.96971 1.22715 0.94281 1.03085 0.95084 1.22529 0.99547 0.92368 0.91080 0.88362 1.21059 0.76136 0.81692 0.91058 1.90699 1.52715 1.42453 1.58915 1.45912 1.66012 1.15569 1.08935 1.20762 0.94768 0.98823 0.80641 0.92435 1.21743 0.97480 1.01110 0.94615 1.22030 0.99692 0.99359 0.95293 1.20486 0.93780 0.95628 0.83581 0.93269 1.42701 1.36165 1.53461 1.05580 1.19661 1.08262 1.17409 0.91261 0.90666 1.25563 1.00376 1.02917 0.98383 1.69829 1.32669 1.48074 1.11717 0.85102 0.78144 0.78090 0.78639 1.18957 1.21926 1.22407 1.21645 0.97282 1.01101 0.95246 1.21636 0.98392 0.98715 0.95417 0.93485 0.91899 0.91601 0.93520 0.91115 0.92944 0.93132 0.91309 0.91153 0.89436 0.89160 0.87055 0.91564 0.74769 0.93896 0.90468 0.94216 0.94599 0.79763 0.94148 0.91334 0.93158 0.89223 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -1.95 5.96 30.59 0.18 -1.76 16 3 C 0.06 1.04 4.53 86.30 0.39 1.43 16 4 N -0.54 -10.29 4.34 -865.00 -3.75 -14.04 16 5 C 0.04 0.53 6.21 86.65 0.54 1.07 16 6 C -0.13 -1.07 6.94 31.78 0.22 -0.85 16 7 C -0.11 -1.19 6.47 31.98 0.21 -0.98 16 8 C 0.06 0.92 2.80 44.64 0.12 1.05 16 9 H 0.10 1.21 7.81 -2.39 -0.02 1.19 16 10 C 0.51 12.47 7.15 87.65 0.63 13.10 16 11 O -0.57 -20.37 16.15 -3.04 -0.05 -20.42 16 12 N -0.71 -13.80 5.06 -442.52 -2.24 -16.04 16 13 C 0.16 3.98 2.45 44.99 0.11 4.09 16 14 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 15 C -0.11 -3.28 5.49 30.59 0.17 -3.12 16 16 C -0.12 -4.68 5.50 30.59 0.17 -4.51 16 17 C 0.17 6.82 2.77 44.99 0.12 6.94 16 18 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 19 N -0.74 -38.11 5.12 -322.93 -1.65 -39.76 16 20 C -0.23 -13.20 9.93 84.03 0.83 -12.36 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 23 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 24 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 C -0.11 -3.57 5.39 30.59 0.16 -3.41 16 29 C -0.10 -2.27 5.39 30.59 0.16 -2.10 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 34 H 0.07 1.02 7.14 -2.38 -0.02 1.00 16 35 H 0.05 0.70 7.96 -2.39 -0.02 0.69 16 36 H 0.05 1.12 8.07 -2.38 -0.02 1.10 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.73 6.91 -2.39 -0.02 0.71 16 39 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.94 8.05 -2.39 -0.02 0.92 16 43 H 0.42 4.73 8.60 -92.71 -0.80 3.93 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.37 20.64 7.80 -92.71 -0.72 19.92 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 53 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -75.63 411.42 -0.83 -76.45 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.65 Total: 32.33 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.21 Total: -7.01 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -7.36 Total: -130.41 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -75.63 -0.83 -76.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034658860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.407 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds