Wall clock time and date at job start Tue Mar 31 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47255 * 2 1 4 4 H 1.08997 * 109.52222 * 54.91748 * 3 2 1 5 5 C 1.53194 * 109.48620 * 294.83324 * 3 2 1 6 6 N 1.46929 * 108.76538 * 185.39470 * 5 3 2 7 7 C 1.34775 * 120.63167 * 233.59257 * 6 5 3 8 8 O 1.21276 * 120.00096 * 0.02610 * 7 6 5 9 9 C 1.50705 * 119.99749 * 180.02562 * 7 6 5 10 10 N 1.46898 * 109.46758 * 180.02562 * 9 7 6 11 11 C 1.46905 * 110.99864 * 66.05159 * 10 9 7 12 12 C 1.46900 * 110.99775 * 189.99951 * 10 9 7 13 13 C 1.53788 * 113.61358 * 163.70378 * 12 10 9 14 14 C 1.53952 * 87.01872 * 220.04992 * 13 12 10 15 15 C 1.53781 * 87.11401 * 25.36438 * 14 13 12 16 16 C 1.46924 * 118.73525 * 53.61622 * 6 5 3 17 17 C 1.53187 * 108.77799 * 306.39275 * 16 6 5 18 18 C 1.53034 * 109.50001 * 175.00067 * 3 2 1 19 19 H 1.08998 * 109.46169 * 61.31585 * 18 3 2 20 20 N 1.46502 * 109.45916 * 301.33694 * 18 3 2 21 21 C 1.36938 * 119.99715 * 154.97314 * 20 18 3 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31626 * 120.00007 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99992 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47371 * 269.99862 * 25 23 21 27 27 H 1.48498 * 109.47411 * 29.99933 * 25 23 21 28 28 H 1.48502 * 109.47100 * 149.99752 * 25 23 21 29 29 H 1.09003 * 109.47141 * 299.99944 * 1 2 3 30 30 H 1.08996 * 109.46931 * 59.99962 * 1 2 3 31 31 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47475 * 240.00370 * 2 1 3 33 33 H 1.08997 * 109.47634 * 119.99785 * 2 1 3 34 34 H 1.09001 * 109.58576 * 65.61894 * 5 3 2 35 35 H 1.08998 * 109.71811 * 305.25809 * 5 3 2 36 36 H 1.08997 * 109.47042 * 300.00111 * 9 7 6 37 37 H 1.09001 * 109.46552 * 60.00387 * 9 7 6 38 38 H 1.08991 * 109.47340 * 53.67402 * 11 10 9 39 39 H 1.08997 * 109.46900 * 173.67542 * 11 10 9 40 40 H 1.08999 * 109.46741 * 293.66830 * 11 10 9 41 41 H 1.08992 * 112.85460 * 294.90028 * 12 10 9 42 42 H 1.09004 * 113.61250 * 334.56900 * 13 12 10 43 43 H 1.08997 * 113.61274 * 105.46944 * 13 12 10 44 44 H 1.08997 * 113.53821 * 270.80831 * 14 13 12 45 45 H 1.09001 * 113.73916 * 139.94264 * 14 13 12 46 46 H 1.08999 * 113.61330 * 220.09485 * 15 14 13 47 47 H 1.08995 * 113.69350 * 89.19494 * 15 14 13 48 48 H 1.09004 * 109.58448 * 186.59951 * 16 6 5 49 49 H 1.09005 * 109.58485 * 66.17867 * 16 6 5 50 50 H 1.09000 * 109.49458 * 294.67940 * 17 16 6 51 51 H 1.09007 * 109.52587 * 174.60657 * 17 16 6 52 52 H 0.96994 * 119.99807 * 334.96797 * 20 18 3 53 53 H 0.96998 * 119.99594 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6385 2.1265 -1.3107 6 7 2.2448 3.4643 -1.3507 7 6 1.4852 4.5562 -1.5681 8 8 0.2893 4.4400 -1.7326 9 6 2.1221 5.9215 -1.6069 10 7 1.0897 6.9364 -1.8564 11 6 0.1511 7.0205 -0.7295 12 6 1.6951 8.2453 -2.1361 13 6 0.7253 9.2462 -2.7863 14 6 1.9024 9.6859 -3.6757 15 6 2.4962 8.2857 -3.4481 16 6 3.6949 3.5890 -1.1496 17 6 4.0733 2.8883 0.1590 18 6 3.5652 1.4451 0.1257 19 1 4.0008 0.9264 -0.7283 20 7 3.9541 0.7621 1.3620 21 6 5.1921 0.1859 1.4656 22 1 5.8815 0.2346 0.6356 23 6 5.5608 -0.4608 2.6372 24 7 6.7506 -1.0151 2.7365 25 14 4.3682 -0.5457 4.0722 26 1 4.5687 0.6330 4.9530 27 1 2.9749 -0.5483 3.5585 28 1 4.6127 -1.7893 4.8462 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5533 2.2156 -1.3588 35 1 1.9947 1.5384 -2.1565 36 1 2.6066 6.1237 -0.6517 37 1 2.8641 5.9537 -2.4047 38 1 0.7064 7.1785 0.1950 39 1 -0.5340 7.8532 -0.8887 40 1 -0.4158 6.0922 -0.6588 41 1 2.2354 8.6530 -1.2818 42 1 -0.0860 8.7720 -3.3387 43 1 0.3776 10.0227 -2.1050 44 1 2.4990 10.4889 -3.2426 45 1 1.6220 9.8782 -4.7113 46 1 3.5761 8.2882 -3.3003 47 1 2.1709 7.5476 -4.1812 48 1 3.9664 4.6431 -1.0916 49 1 4.2207 3.1193 -1.9809 50 1 3.6188 3.4148 0.9982 51 1 5.1574 2.8898 0.2728 52 1 3.3348 0.7181 2.1072 53 1 7.0083 -1.4666 3.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037861722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:17 Heat of formation + Delta-G solvation = 2.083744 kcal Electronic energy + Delta-G solvation = -28935.818488 eV Core-core repulsion = 25229.347441 eV Total energy + Delta-G solvation = -3706.471047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41839 -39.33863 -37.87517 -35.10905 -34.81462 -33.89126 -31.79919 -29.92466 -29.67614 -28.09686 -26.46344 -25.61421 -24.85009 -23.97724 -22.76294 -22.20821 -20.84917 -19.99507 -19.60476 -18.95375 -17.62405 -17.26318 -16.31263 -15.96731 -15.55427 -15.51055 -14.94147 -14.58966 -14.35186 -14.29390 -13.79480 -13.72414 -13.39937 -13.33741 -13.01337 -12.85661 -12.70633 -12.64858 -12.42217 -12.13367 -11.96648 -11.87505 -11.79948 -11.78914 -11.41672 -11.14467 -11.05714 -10.99211 -10.82028 -10.79020 -10.52169 -10.40601 -10.33683 -10.22605 -9.76901 -9.61731 -9.60502 -8.95939 -8.56764 -8.43638 -7.30723 -5.81312 -3.16692 2.69178 2.94146 3.33836 3.37288 3.42593 3.78604 4.24888 4.39339 4.52377 4.55051 4.55172 4.64129 4.90475 4.99359 5.07345 5.08637 5.15747 5.21946 5.24031 5.33001 5.35483 5.42717 5.46592 5.47386 5.51140 5.54601 5.58803 5.59708 5.61133 5.65065 5.78756 5.90569 5.91787 5.98551 6.01254 6.03448 6.08937 6.12230 6.22994 6.28690 6.32970 6.44138 6.54736 6.69462 6.71915 6.80775 6.91725 6.93052 7.50766 7.94403 8.28141 8.37937 9.16151 9.89013 10.08979 11.36974 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002905 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.805815 B = 9636.343253 C =10361.245389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.107 4.107 4 H 0.068 0.932 5 C 0.121 3.879 6 N -0.609 5.609 7 C 0.516 3.484 8 O -0.532 6.532 9 C 0.037 3.963 10 N -0.513 5.513 11 C 0.019 3.981 12 C 0.050 3.950 13 C -0.125 4.125 14 C -0.141 4.141 15 C -0.132 4.132 16 C 0.107 3.893 17 C -0.152 4.152 18 C 0.189 3.811 19 H 0.057 0.943 20 N -0.745 5.745 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.276 1.276 28 H -0.291 1.291 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.019 0.981 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.081 0.919 52 H 0.361 0.639 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 17.815 -11.402 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.343 5.343 7 C 0.304 3.696 8 O -0.408 6.408 9 C -0.094 4.094 10 N -0.237 5.237 11 C -0.129 4.129 12 C -0.058 4.058 13 C -0.163 4.163 14 C -0.179 4.179 15 C -0.170 4.170 16 C -0.016 4.016 17 C -0.193 4.193 18 C 0.079 3.921 19 H 0.075 0.925 20 N -0.387 5.387 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.099 0.901 52 H 0.194 0.806 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.448 17.500 -11.935 24.078 hybrid contribution -0.018 0.115 2.060 2.063 sum -11.466 17.615 -9.876 23.222 Atomic orbital electron populations 1.21848 0.96636 1.01154 1.01426 1.21464 0.94551 0.95726 1.03403 1.21821 0.97539 0.96269 0.97126 0.91402 1.21687 0.99498 0.81531 0.97401 1.48188 1.08526 1.06725 1.70883 1.20416 0.87048 0.85770 0.76377 1.90630 1.14730 1.86214 1.49265 1.21990 0.94744 0.90557 1.02120 1.61962 1.15982 1.04650 1.41074 1.22521 0.96215 1.04039 0.90094 1.23255 0.96705 0.89290 0.96585 1.22972 0.97247 0.97430 0.98663 1.22739 0.97971 0.96849 1.00385 1.22998 0.99059 0.97664 0.97238 1.21859 0.79551 1.01028 0.99195 1.22644 1.02604 0.98829 0.95215 1.20152 0.90735 0.90613 0.90609 0.92511 1.42779 1.16468 1.66305 1.13126 1.19046 0.90395 1.27309 1.00397 0.89199 1.24656 0.96416 1.00269 0.97693 1.69698 1.19324 1.41597 1.27497 0.86596 0.81179 0.77310 0.83690 1.21229 1.20261 1.21793 0.93148 0.92903 0.93065 0.91941 0.90478 0.89124 0.91580 0.91982 0.87976 0.96212 0.91627 0.89226 0.91828 0.89073 0.91781 0.90316 0.91065 0.91576 0.89104 0.90630 0.91172 0.92400 0.90065 0.80633 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.64 1.92 -90.50 -0.17 -1.81 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.67 5.33 -3.71 -0.02 1.65 16 6 N -0.61 -8.03 2.97 -172.76 -0.51 -8.54 16 7 C 0.52 7.09 7.46 -10.98 -0.08 7.01 16 8 O -0.53 -8.88 13.72 5.56 0.08 -8.81 16 9 C 0.04 0.40 3.72 -4.97 -0.02 0.38 16 10 N -0.51 -5.64 4.44 -235.35 -1.05 -6.68 16 11 C 0.02 0.21 9.15 60.07 0.55 0.76 16 12 C 0.05 0.43 3.17 -66.89 -0.21 0.22 16 13 C -0.13 -0.97 7.15 -25.83 -0.18 -1.15 16 14 C -0.14 -0.94 8.09 -25.83 -0.21 -1.15 16 15 C -0.13 -1.00 6.83 -25.92 -0.18 -1.18 16 16 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 17 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 18 C 0.19 3.32 2.19 -67.89 -0.15 3.17 16 19 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 20 N -0.74 -16.47 4.13 -53.39 -0.22 -16.69 16 21 C -0.24 -6.45 10.41 -15.06 -0.16 -6.60 16 22 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 25 Si 0.88 21.66 27.73 -169.99 -4.71 16.95 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.37 7.22 -51.93 -0.37 0.99 16 34 H 0.09 1.31 5.73 -51.93 -0.30 1.02 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 37 H 0.10 0.95 7.04 -51.93 -0.37 0.58 16 38 H 0.02 0.21 8.05 -51.93 -0.42 -0.21 16 39 H 0.06 0.64 7.49 -51.93 -0.39 0.25 16 40 H 0.09 1.21 6.02 -51.93 -0.31 0.90 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.73 5.93 -51.93 -0.31 0.43 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 52 H 0.36 8.05 5.37 -40.82 -0.22 7.83 16 53 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -31.07 399.34 -10.29 -41.36 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -9.78 Total: 7.59 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.88 Total: -3.36 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.00 Total: -59.75 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.07 -10.29 -41.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.448 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds