Wall clock time and date at job start Tue Mar 31 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47255 * 2 1 4 4 H 1.08997 * 109.52222 * 54.91748 * 3 2 1 5 5 C 1.53194 * 109.48620 * 294.83324 * 3 2 1 6 6 N 1.46929 * 108.76538 * 185.39470 * 5 3 2 7 7 C 1.34775 * 120.63167 * 233.59257 * 6 5 3 8 8 O 1.21276 * 120.00096 * 0.02610 * 7 6 5 9 9 C 1.50705 * 119.99749 * 180.02562 * 7 6 5 10 10 N 1.46898 * 109.46758 * 180.02562 * 9 7 6 11 11 C 1.46905 * 110.99864 * 66.05159 * 10 9 7 12 12 C 1.46900 * 110.99775 * 189.99951 * 10 9 7 13 13 C 1.53788 * 113.61358 * 163.70378 * 12 10 9 14 14 C 1.53952 * 87.01872 * 220.04992 * 13 12 10 15 15 C 1.53781 * 87.11401 * 25.36438 * 14 13 12 16 16 C 1.46924 * 118.73525 * 53.61622 * 6 5 3 17 17 C 1.53187 * 108.77799 * 306.39275 * 16 6 5 18 18 C 1.53034 * 109.50001 * 175.00067 * 3 2 1 19 19 H 1.08998 * 109.46169 * 61.31585 * 18 3 2 20 20 N 1.46502 * 109.45916 * 301.33694 * 18 3 2 21 21 C 1.36938 * 119.99715 * 154.97314 * 20 18 3 22 22 H 1.08001 * 120.00103 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31626 * 120.00007 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99992 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47371 * 269.99862 * 25 23 21 27 27 H 1.48498 * 109.47411 * 29.99933 * 25 23 21 28 28 H 1.48502 * 109.47100 * 149.99752 * 25 23 21 29 29 H 1.09003 * 109.47141 * 299.99944 * 1 2 3 30 30 H 1.08996 * 109.46931 * 59.99962 * 1 2 3 31 31 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47475 * 240.00370 * 2 1 3 33 33 H 1.08997 * 109.47634 * 119.99785 * 2 1 3 34 34 H 1.09001 * 109.58576 * 65.61894 * 5 3 2 35 35 H 1.08998 * 109.71811 * 305.25809 * 5 3 2 36 36 H 1.08997 * 109.47042 * 300.00111 * 9 7 6 37 37 H 1.09001 * 109.46552 * 60.00387 * 9 7 6 38 38 H 1.08991 * 109.47340 * 53.67402 * 11 10 9 39 39 H 1.08997 * 109.46900 * 173.67542 * 11 10 9 40 40 H 1.08999 * 109.46741 * 293.66830 * 11 10 9 41 41 H 1.08992 * 112.85460 * 294.90028 * 12 10 9 42 42 H 1.09004 * 113.61250 * 334.56900 * 13 12 10 43 43 H 1.08997 * 113.61274 * 105.46944 * 13 12 10 44 44 H 1.08997 * 113.53821 * 270.80831 * 14 13 12 45 45 H 1.09001 * 113.73916 * 139.94264 * 14 13 12 46 46 H 1.08999 * 113.61330 * 220.09485 * 15 14 13 47 47 H 1.08995 * 113.69350 * 89.19494 * 15 14 13 48 48 H 1.09004 * 109.58448 * 186.59951 * 16 6 5 49 49 H 1.09005 * 109.58485 * 66.17867 * 16 6 5 50 50 H 1.09000 * 109.49458 * 294.67940 * 17 16 6 51 51 H 1.09007 * 109.52587 * 174.60657 * 17 16 6 52 52 H 0.96994 * 119.99807 * 334.96797 * 20 18 3 53 53 H 0.96998 * 119.99594 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6385 2.1265 -1.3107 6 7 2.2448 3.4643 -1.3507 7 6 1.4852 4.5562 -1.5681 8 8 0.2893 4.4400 -1.7326 9 6 2.1221 5.9215 -1.6069 10 7 1.0897 6.9364 -1.8564 11 6 0.1511 7.0205 -0.7295 12 6 1.6951 8.2453 -2.1361 13 6 0.7253 9.2462 -2.7863 14 6 1.9024 9.6859 -3.6757 15 6 2.4962 8.2857 -3.4481 16 6 3.6949 3.5890 -1.1496 17 6 4.0733 2.8883 0.1590 18 6 3.5652 1.4451 0.1257 19 1 4.0008 0.9264 -0.7283 20 7 3.9541 0.7621 1.3620 21 6 5.1921 0.1859 1.4656 22 1 5.8815 0.2346 0.6356 23 6 5.5608 -0.4608 2.6372 24 7 6.7506 -1.0151 2.7365 25 14 4.3682 -0.5457 4.0722 26 1 4.5687 0.6330 4.9530 27 1 2.9749 -0.5483 3.5585 28 1 4.6127 -1.7893 4.8462 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5533 2.2156 -1.3588 35 1 1.9947 1.5384 -2.1565 36 1 2.6066 6.1237 -0.6517 37 1 2.8641 5.9537 -2.4047 38 1 0.7064 7.1785 0.1950 39 1 -0.5340 7.8532 -0.8887 40 1 -0.4158 6.0922 -0.6588 41 1 2.2354 8.6530 -1.2818 42 1 -0.0860 8.7720 -3.3387 43 1 0.3776 10.0227 -2.1050 44 1 2.4990 10.4889 -3.2426 45 1 1.6220 9.8782 -4.7113 46 1 3.5761 8.2882 -3.3003 47 1 2.1709 7.5476 -4.1812 48 1 3.9664 4.6431 -1.0916 49 1 4.2207 3.1193 -1.9809 50 1 3.6188 3.4148 0.9982 51 1 5.1574 2.8898 0.2728 52 1 3.3348 0.7181 2.1072 53 1 7.0083 -1.4666 3.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037861722.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:17 Heat of formation + Delta-G solvation = -16.943791 kcal Electronic energy + Delta-G solvation = -28936.643584 eV Core-core repulsion = 25229.347441 eV Total energy + Delta-G solvation = -3707.296142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46556 -40.14241 -39.05852 -36.30817 -35.84527 -35.32973 -33.60510 -31.51704 -30.71815 -29.13923 -27.30180 -26.39088 -26.06959 -25.13570 -24.15259 -23.21001 -22.18984 -21.32495 -20.25208 -20.13300 -19.40467 -18.31146 -17.17667 -16.97202 -16.79085 -16.41671 -16.24127 -15.90493 -15.63438 -15.21698 -15.16850 -14.83606 -14.70723 -14.57295 -14.28614 -14.11975 -13.93730 -13.59234 -13.30316 -13.28095 -13.10378 -12.97005 -12.84395 -12.68071 -12.62093 -12.56983 -12.51208 -12.16422 -12.02752 -11.85438 -11.75797 -11.62936 -11.56292 -11.40808 -11.13432 -11.09360 -10.91739 -10.63983 -9.64166 -9.31704 -9.24250 -7.99974 -5.31500 1.37588 1.38478 1.46071 1.64459 1.93487 2.48891 2.98059 3.31822 3.48638 3.55951 3.66476 3.76053 3.82909 3.97070 3.98354 4.00974 4.06228 4.20836 4.25803 4.30154 4.32439 4.42126 4.45032 4.53632 4.54276 4.61179 4.68477 4.71158 4.79631 4.82131 4.87437 4.89893 4.96874 4.99339 5.03017 5.06683 5.11575 5.11949 5.15218 5.24944 5.33650 5.34959 5.44758 5.49927 5.52439 5.64749 5.80795 5.91594 6.18425 6.24411 6.46797 7.10371 7.22803 7.87487 8.05614 9.21592 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002905 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.805815 B = 9636.343253 C =10361.245389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.095 4.095 4 H 0.060 0.940 5 C 0.127 3.873 6 N -0.610 5.610 7 C 0.514 3.486 8 O -0.565 6.565 9 C 0.041 3.959 10 N -0.527 5.527 11 C 0.025 3.975 12 C 0.046 3.954 13 C -0.126 4.126 14 C -0.134 4.134 15 C -0.130 4.130 16 C 0.115 3.885 17 C -0.144 4.144 18 C 0.182 3.818 19 H 0.048 0.952 20 N -0.747 5.747 21 C -0.215 4.215 22 H 0.062 0.938 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.945 3.055 26 H -0.283 1.283 27 H -0.255 1.255 28 H -0.300 1.300 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.053 0.947 51 H 0.066 0.934 52 H 0.362 0.638 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 19.918 -12.226 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.078 0.922 5 C 0.004 3.996 6 N -0.343 5.343 7 C 0.302 3.698 8 O -0.443 6.443 9 C -0.090 4.090 10 N -0.252 5.252 11 C -0.123 4.123 12 C -0.061 4.061 13 C -0.164 4.164 14 C -0.172 4.172 15 C -0.168 4.168 16 C -0.008 4.008 17 C -0.185 4.185 18 C 0.074 3.926 19 H 0.066 0.934 20 N -0.390 5.390 21 C -0.347 4.347 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.774 3.226 26 H -0.210 1.210 27 H -0.179 1.179 28 H -0.227 1.227 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.125 0.875 49 H 0.102 0.898 50 H 0.072 0.928 51 H 0.084 0.916 52 H 0.194 0.806 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.554 19.646 -12.800 26.597 hybrid contribution 0.309 -0.508 2.205 2.283 sum -12.245 19.139 -10.595 25.070 Atomic orbital electron populations 1.21784 0.94757 1.01995 1.01844 1.21422 0.96199 0.95240 1.02173 1.21673 0.95371 0.96597 0.97856 0.92191 1.21572 0.99359 0.82050 0.96612 1.48244 1.08952 1.06457 1.70617 1.20966 0.86665 0.86715 0.75404 1.90624 1.16251 1.86734 1.50716 1.22011 0.94805 0.88724 1.03439 1.61949 1.16416 1.05846 1.40969 1.22400 0.96404 1.02968 0.90571 1.23377 0.97241 0.88275 0.97254 1.22960 0.97196 0.97372 0.98904 1.22731 0.97251 0.96661 1.00524 1.22980 0.99625 0.97956 0.96224 1.21878 0.78846 1.02639 0.97427 1.22452 1.01421 0.97306 0.97289 1.20396 0.92518 0.91409 0.88268 0.93367 1.42797 1.14847 1.66549 1.14761 1.19002 0.91242 1.25447 0.98959 0.91962 1.25367 0.98136 1.01185 1.00707 1.69865 1.21661 1.43810 1.28188 0.85551 0.80128 0.76697 0.80232 1.20958 1.17940 1.22716 0.93306 0.91877 0.92060 0.91650 0.93181 0.89532 0.90514 0.90803 0.86001 0.95772 0.90683 0.91885 0.91142 0.90379 0.91035 0.89082 0.90640 0.90408 0.90163 0.87534 0.89822 0.92824 0.91574 0.80553 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.67 71.98 0.70 -2.87 16 2 C -0.11 -3.28 5.31 30.59 0.16 -3.11 16 3 C -0.09 -2.78 1.92 -10.72 -0.02 -2.80 16 4 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.13 3.28 5.33 86.36 0.46 3.74 16 6 N -0.61 -14.71 2.97 -818.90 -2.43 -17.14 16 7 C 0.51 13.08 7.46 87.66 0.65 13.73 16 8 O -0.56 -18.28 13.72 -3.02 -0.04 -18.32 16 9 C 0.04 0.77 3.72 85.56 0.32 1.09 16 10 N -0.53 -10.58 4.44 -898.50 -3.99 -14.57 16 11 C 0.02 0.52 9.15 127.69 1.17 1.69 16 12 C 0.05 0.69 3.17 45.45 0.14 0.83 16 13 C -0.13 -1.70 7.15 31.18 0.22 -1.47 16 14 C -0.13 -1.42 8.09 31.18 0.25 -1.17 16 15 C -0.13 -1.63 6.83 31.12 0.21 -1.42 16 16 C 0.11 2.43 6.34 86.36 0.55 2.98 16 17 C -0.14 -4.23 5.66 30.67 0.17 -4.05 16 18 C 0.18 6.27 2.19 45.02 0.10 6.36 16 19 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 20 N -0.75 -32.82 4.13 -322.82 -1.33 -34.15 16 21 C -0.22 -11.65 10.41 84.03 0.87 -10.78 16 22 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 23 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 24 N -0.98 -61.98 13.97 21.65 0.30 -61.68 16 25 Si 0.95 45.15 27.73 68.60 1.90 47.05 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 27 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 28 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.41 6.70 -2.39 -0.02 1.39 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.05 1.74 7.22 -2.39 -0.02 1.72 16 34 H 0.09 2.37 5.73 -2.39 -0.01 2.36 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.25 7.60 -2.39 -0.02 1.23 16 37 H 0.12 1.82 7.04 -2.39 -0.02 1.80 16 38 H 0.02 0.47 8.05 -2.39 -0.02 0.45 16 39 H 0.07 1.38 7.49 -2.39 -0.02 1.36 16 40 H 0.06 1.68 6.02 -2.39 -0.01 1.66 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.11 1.66 5.93 -2.38 -0.01 1.64 16 49 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 51 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 52 H 0.36 15.80 5.37 -92.71 -0.50 15.30 16 53 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -68.53 399.34 1.15 -67.38 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.31 Total: 31.82 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.43 Total: -0.39 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -7.46 Total: -127.54 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.04 Total: -18.32 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Total: -68.53 1.15 -67.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861722.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.440 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds