Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 C 1.52997 * 109.47178 * 120.00742 * 2 1 3 5 5 N 1.46899 * 109.47848 * 64.99726 * 4 2 1 6 6 C 1.47842 * 110.99568 * 49.15473 * 5 4 2 7 7 C 1.54913 * 104.79541 * 146.37077 * 6 5 4 8 8 C 1.55142 * 101.64921 * 322.93022 * 7 6 5 9 9 H 1.09007 * 110.85227 * 277.20150 * 8 7 6 10 10 C 1.50693 * 110.70603 * 154.03957 * 8 7 6 11 11 O 1.21284 * 119.99780 * 246.40086 * 10 8 7 12 12 N 1.34774 * 120.00376 * 66.40010 * 10 8 7 13 13 C 1.46502 * 119.99939 * 180.02562 * 12 10 8 14 14 C 1.52998 * 110.64451 * 61.68352 * 13 12 10 15 15 C 1.55158 * 110.71677 * 185.02309 * 13 12 10 16 16 C 1.55126 * 101.49111 * 82.69102 * 15 13 12 17 17 N 1.47428 * 104.71936 * 37.29433 * 16 15 13 18 18 C 1.36938 * 125.65112 * 155.81651 * 17 16 15 19 19 H 1.07999 * 120.00325 * 179.69062 * 18 17 16 20 20 C 1.38815 * 119.99817 * 359.69708 * 18 17 16 21 21 N 1.31621 * 119.99673 * 359.71804 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 C 1.47022 * 108.70445 * 335.55505 * 17 16 15 27 27 C 1.47434 * 111.00421 * 169.99892 * 5 4 2 28 28 H 1.08993 * 109.47203 * 59.99436 * 1 2 3 29 29 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46477 * 299.99557 * 1 2 3 31 31 H 1.09008 * 109.46885 * 240.00304 * 2 1 3 32 32 H 1.09001 * 109.46927 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47173 * 300.00204 * 3 2 1 34 34 H 1.09002 * 109.46994 * 60.00759 * 3 2 1 35 35 H 1.08998 * 109.47085 * 304.99189 * 4 2 1 36 36 H 1.08999 * 109.47239 * 184.99845 * 4 2 1 37 37 H 1.09007 * 110.37503 * 265.19791 * 6 5 4 38 38 H 1.08996 * 110.37845 * 27.42703 * 6 5 4 39 39 H 1.08998 * 110.99110 * 204.84240 * 7 6 5 40 40 H 1.08995 * 110.98889 * 81.01883 * 7 6 5 41 41 H 0.97000 * 119.99854 * 359.97438 * 12 10 8 42 42 H 1.08997 * 109.47346 * 298.31225 * 14 13 12 43 43 H 1.08999 * 109.47086 * 58.31058 * 14 13 12 44 44 H 1.09004 * 109.47183 * 178.30857 * 14 13 12 45 45 H 1.09007 * 111.00385 * 200.93198 * 15 13 12 46 46 H 1.09000 * 111.00511 * 324.78030 * 15 13 12 47 47 H 1.09002 * 110.49763 * 278.45589 * 16 15 13 48 48 H 1.08996 * 110.34670 * 156.05742 * 16 15 13 49 49 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.88563 * 120.70456 * 26 17 16 51 51 H 1.09000 * 109.88414 * 241.86883 * 26 17 16 52 52 H 1.09003 * 109.88760 * 117.33158 * 27 5 4 53 53 H 1.08997 * 110.02480 * 356.22818 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6514 -2.1368 1.1903 6 6 1.9998 -2.7278 -0.1193 7 6 2.3710 -4.1983 0.1964 8 6 3.1011 -4.0518 1.5575 9 1 4.1440 -3.7709 1.4102 10 6 3.0021 -5.3265 2.3551 11 8 2.3692 -5.3469 3.3895 12 7 3.6169 -6.4438 1.9191 13 6 3.5201 -7.6831 2.6943 14 6 2.0642 -8.1412 2.7997 15 6 4.4050 -8.7930 2.0676 16 6 5.7975 -8.4480 2.6577 17 7 5.5200 -7.9963 4.0334 18 6 6.4050 -8.0285 5.0778 19 1 6.1054 -7.6682 6.0509 20 6 7.6873 -8.5244 4.8860 21 7 8.0506 -8.9686 3.7015 22 14 8.8947 -8.5678 6.3105 23 1 8.7692 -9.8626 7.0266 24 1 10.2784 -8.4215 5.7913 25 1 8.5968 -7.4538 7.2462 26 6 4.1377 -7.4995 4.0967 27 6 2.3220 -2.9134 2.2491 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 1.6055 -0.2619 2.1369 36 1 3.1263 -0.6445 1.2950 37 1 1.1438 -2.6888 -0.7931 38 1 2.8505 -2.2056 -0.5572 39 1 3.0391 -4.6041 -0.5632 40 1 1.4771 -4.8136 0.2971 41 1 4.1227 -6.4275 1.0916 42 1 1.4812 -7.3820 3.3209 43 1 1.6565 -8.2892 1.7997 44 1 2.0174 -9.0789 3.3535 45 1 4.0757 -9.7819 2.3869 46 1 4.4139 -8.7181 0.9803 47 1 6.2680 -7.6495 2.0839 48 1 6.4337 -9.3329 2.6701 49 1 8.9465 -9.3154 3.5674 50 1 3.5706 -8.0736 4.8294 51 1 4.1352 -6.4437 4.3674 52 1 1.5795 -3.3317 2.9288 53 1 3.0112 -2.2743 2.8011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046373748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -34.873688 kcal Electronic energy + Delta-G solvation = -28829.566086 eV Core-core repulsion = 25121.492445 eV Total energy + Delta-G solvation = -3708.073641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58382 -40.12035 -38.70407 -36.39117 -35.73520 -33.74579 -32.39917 -31.32703 -30.39621 -29.97092 -27.91691 -27.55844 -26.55774 -25.41900 -23.72763 -22.60230 -22.23467 -21.05404 -20.44764 -20.34569 -19.02931 -18.32075 -17.33326 -17.08080 -16.68895 -16.28778 -16.10148 -15.63323 -15.46929 -15.30503 -14.78145 -14.55332 -14.45422 -14.36935 -14.05221 -14.02034 -13.56623 -13.36288 -13.32117 -13.18704 -13.07824 -12.90577 -12.83476 -12.79701 -12.72491 -12.38093 -12.23909 -12.07612 -12.05160 -11.96380 -11.86255 -11.74815 -11.68345 -11.57673 -11.50844 -11.34844 -10.76905 -10.56334 -9.99060 -9.24583 -8.89920 -7.80306 -5.24077 1.43572 1.45167 1.53966 1.69335 2.20204 2.46785 2.99858 3.28448 3.45871 3.54492 3.68143 3.70190 3.86234 3.94975 4.02882 4.07197 4.17973 4.23654 4.26590 4.37679 4.39022 4.54357 4.63201 4.66792 4.72197 4.74469 4.81239 4.84047 4.85820 4.87184 4.90421 4.95627 4.98696 5.01728 5.06223 5.09030 5.09912 5.17698 5.19468 5.28602 5.33876 5.41052 5.47251 5.53388 5.60933 5.71121 5.80077 5.97855 6.13795 6.30138 6.65509 7.09746 7.34216 7.75755 8.39188 9.20623 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002688 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.785284 B =10412.385842 C =11174.507681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.045 3.955 7 C -0.108 4.108 8 C -0.126 4.126 9 H 0.108 0.892 10 C 0.523 3.477 11 O -0.572 6.572 12 N -0.701 5.701 13 C 0.171 3.829 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.155 3.845 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.068 0.932 20 C -0.061 4.061 21 N -0.943 5.943 22 Si 0.978 3.022 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.135 3.865 27 C 0.060 3.940 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.410 0.590 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.102 0.898 47 H -0.007 1.007 48 H 0.077 0.923 49 H 0.249 0.751 50 H 0.018 0.982 51 H 0.008 0.992 52 H 0.072 0.928 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 14.220 -14.591 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.075 4.075 5 N -0.256 5.256 6 C -0.082 4.082 7 C -0.146 4.146 8 C -0.149 4.149 9 H 0.126 0.874 10 C 0.310 3.690 11 O -0.452 6.452 12 N -0.352 5.352 13 C 0.084 3.916 14 C -0.197 4.197 15 C -0.166 4.166 16 C 0.030 3.970 17 N -0.350 5.350 18 C -0.372 4.372 19 H 0.086 0.914 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.806 3.194 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.009 3.991 27 C -0.068 4.068 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.246 0.754 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.121 0.879 47 H 0.011 0.989 48 H 0.095 0.905 49 H 0.059 0.941 50 H 0.036 0.964 51 H 0.026 0.974 52 H 0.090 0.910 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.382 14.141 -13.724 24.396 hybrid contribution 2.119 0.055 0.917 2.309 sum -12.263 14.196 -12.807 22.714 Atomic orbital electron populations 1.21709 0.94469 1.01912 1.01249 1.21225 0.96818 0.96232 0.97074 1.21803 1.00900 0.95283 1.02316 1.22451 0.97690 0.87969 0.99395 1.63705 1.56370 1.02403 1.03123 1.23129 1.00777 0.92914 0.91412 1.22716 1.00497 0.97822 0.93583 1.22500 1.02537 0.92423 0.97405 0.87397 1.20717 0.77776 0.85336 0.85180 1.90648 1.43317 1.85459 1.25750 1.45883 1.53204 1.09303 1.26796 1.21127 0.95805 0.84535 0.90132 1.21934 0.93554 1.01224 1.02993 1.23236 0.95033 0.97364 1.00922 1.21816 0.93855 0.98370 0.82958 1.44797 1.09240 1.73256 1.07664 1.19363 0.92927 1.34926 0.89965 0.91410 1.25546 0.98787 1.01411 0.99630 1.70002 1.18872 1.48443 1.21986 0.85086 0.78030 0.77868 0.78379 1.20962 1.21452 1.20283 1.21683 0.85591 0.95706 0.96101 1.22607 0.96490 0.93254 0.94454 0.92350 0.92621 0.93453 0.90420 0.92744 0.91599 0.92727 0.91412 0.94870 0.88826 0.92087 0.87629 0.90739 0.75391 0.92672 0.90212 0.91472 0.89977 0.87947 0.98890 0.90550 0.94130 0.96367 0.97363 0.90975 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.08 71.98 0.65 -1.21 16 2 C -0.09 -1.26 2.58 -10.79 -0.03 -1.29 16 3 C -0.15 -1.66 9.19 71.98 0.66 -0.99 16 4 C 0.05 0.91 4.21 86.30 0.36 1.27 16 5 N -0.53 -10.53 4.77 -885.58 -4.22 -14.75 16 6 C 0.04 0.68 5.22 86.78 0.45 1.13 16 7 C -0.11 -1.75 6.51 31.98 0.21 -1.55 16 8 C -0.13 -2.89 3.33 -10.36 -0.03 -2.92 16 9 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 10 C 0.52 16.18 6.36 87.66 0.56 16.73 16 11 O -0.57 -22.31 12.36 -3.04 -0.04 -22.35 16 12 N -0.70 -20.70 5.14 -417.56 -2.15 -22.84 16 13 C 0.17 5.90 0.81 4.79 0.00 5.91 16 14 C -0.14 -4.14 8.41 71.98 0.61 -3.53 16 15 C -0.13 -4.35 6.11 32.06 0.20 -4.15 16 16 C 0.15 7.37 5.89 86.93 0.51 7.88 16 17 N -0.62 -33.31 3.39 -691.54 -2.35 -35.66 16 18 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 21 N -0.94 -55.67 10.08 21.65 0.22 -55.45 16 22 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 C 0.14 6.26 6.13 86.73 0.53 6.80 16 27 C 0.06 1.49 6.29 86.65 0.55 2.03 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.88 7.67 -2.39 -0.02 0.86 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.96 6.29 -2.38 -0.01 0.94 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.03 0.58 7.96 -2.39 -0.02 0.56 16 37 H 0.09 1.24 8.06 -2.38 -0.02 1.22 16 38 H 0.06 0.80 7.05 -2.39 -0.02 0.79 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.35 8.04 -2.39 -0.02 1.33 16 41 H 0.41 9.83 8.47 -92.71 -0.79 9.05 16 42 H 0.05 1.85 6.44 -2.39 -0.02 1.84 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.76 8.05 -2.38 -0.02 2.74 16 46 H 0.10 2.71 8.04 -2.39 -0.02 2.69 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.08 4.16 5.85 -2.39 -0.01 4.15 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.02 0.87 7.82 -2.39 -0.02 0.86 16 51 H 0.01 0.43 6.47 -2.39 -0.02 0.41 16 52 H 0.07 2.20 6.81 -2.39 -0.02 2.19 16 53 H 0.05 1.30 7.50 -2.39 -0.02 1.28 16 Total: -1.00 -70.81 398.73 0.14 -70.68 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.08 Total: 22.09 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.56 Total: 9.68 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -8.50 Total: -128.71 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -70.81 0.14 -70.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046373748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.802 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds