Wall clock time and date at job start Tue Mar 31 2020 14:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 N 1.46902 * 109.47331 * 180.02562 * 3 2 1 5 5 C 1.47438 * 111.00110 * 69.15569 * 4 3 2 6 6 C 1.54313 * 107.23376 * 123.25998 * 5 4 3 7 7 C 1.55134 * 103.01955 * 22.28193 * 6 5 4 8 8 C 1.47841 * 110.99647 * 190.00263 * 4 3 2 9 9 H 1.08992 * 110.37623 * 332.57107 * 8 4 3 10 10 C 1.50694 * 110.37629 * 94.81057 * 8 4 3 11 11 O 1.21289 * 120.00151 * 359.97438 * 10 8 4 12 12 N 1.34780 * 120.00448 * 179.97438 * 10 8 4 13 13 C 1.46500 * 120.00290 * 179.97438 * 12 10 8 14 14 H 1.08998 * 110.77916 * 328.23878 * 13 12 10 15 15 C 1.55158 * 110.71636 * 91.47816 * 13 12 10 16 16 C 1.54914 * 101.57838 * 153.86744 * 15 13 12 17 17 N 1.47423 * 104.82910 * 322.98402 * 16 15 13 18 18 C 1.36939 * 125.64616 * 204.16019 * 17 16 15 19 19 H 1.07999 * 119.99564 * 156.17826 * 18 17 16 20 20 C 1.38808 * 120.00260 * 336.18691 * 18 17 16 21 21 N 1.31620 * 120.00162 * 160.11560 * 20 18 17 22 22 Si 1.86806 * 119.99868 * 340.10989 * 20 18 17 23 23 H 1.48499 * 109.46807 * 90.00287 * 22 20 18 24 24 H 1.48501 * 109.46889 * 210.00448 * 22 20 18 25 25 H 1.48498 * 109.47249 * 330.00561 * 22 20 18 26 26 C 1.47024 * 108.70372 * 24.13345 * 17 16 15 27 27 H 1.08999 * 109.87958 * 239.51584 * 26 17 16 28 28 C 1.53006 * 109.88101 * 118.50723 * 26 17 16 29 29 C 1.53005 * 109.47140 * 64.05241 * 28 26 17 30 30 H 1.09001 * 109.47668 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47426 * 300.00292 * 1 2 3 32 32 H 1.09001 * 109.47554 * 59.99696 * 1 2 3 33 33 H 1.09004 * 109.46833 * 240.00086 * 2 1 3 34 34 H 1.08997 * 109.47110 * 120.00545 * 2 1 3 35 35 H 1.08999 * 109.47090 * 59.99502 * 3 2 1 36 36 H 1.09001 * 109.47035 * 300.00622 * 3 2 1 37 37 H 1.08999 * 109.89164 * 242.66761 * 5 4 3 38 38 H 1.09007 * 109.89006 * 3.69135 * 5 4 3 39 39 H 1.08997 * 110.71059 * 140.66620 * 6 5 4 40 40 H 1.09005 * 110.70855 * 263.90288 * 6 5 4 41 41 H 1.08999 * 110.99643 * 206.25390 * 7 6 5 42 42 H 1.09007 * 110.99114 * 82.43897 * 7 6 5 43 43 H 0.97002 * 119.99471 * 359.97438 * 12 10 8 44 44 H 1.08989 * 111.00694 * 35.78841 * 15 13 12 45 45 H 1.09003 * 111.03428 * 271.95092 * 15 13 12 46 46 H 1.08999 * 110.35989 * 204.15091 * 16 15 13 47 47 H 1.08992 * 110.36846 * 81.82971 * 16 15 13 48 48 H 0.97000 * 119.99798 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.46878 * 184.05000 * 28 26 17 50 50 H 1.08997 * 109.47186 * 304.05216 * 28 26 17 51 51 H 1.08989 * 109.47287 * 172.66688 * 29 28 26 52 52 H 1.08997 * 109.46982 * 292.67494 * 29 28 26 53 53 H 1.09006 * 109.46740 * 52.67095 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0369 0.9529 -1.2873 6 6 4.9551 2.0559 -1.8542 7 6 5.3445 2.8694 -0.5919 8 6 4.0389 2.8017 0.2391 9 1 3.3281 3.5524 -0.1060 10 6 4.3381 2.9976 1.7030 11 8 4.1340 2.0971 2.4895 12 7 4.8326 4.1734 2.1384 13 6 5.1229 4.3639 3.5616 14 1 4.4327 3.7876 4.1777 15 6 6.5927 3.9804 3.8781 16 6 6.8784 4.8492 5.1285 17 7 6.1655 6.1153 4.8791 18 6 6.4746 7.3281 5.4350 19 1 6.1806 8.2406 4.9377 20 6 7.1660 7.3845 6.6373 21 7 7.8009 8.4852 6.9803 22 14 7.1951 5.8983 7.7686 23 1 8.3568 5.0388 7.4267 24 1 7.3122 6.3513 9.1780 25 1 5.9396 5.1234 7.6004 26 6 5.0683 5.8604 3.9343 27 1 5.1996 6.4702 3.0405 28 6 3.7270 6.1870 4.5942 29 6 3.6668 7.6819 4.9147 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9563 -0.8899 37 1 4.6092 0.0387 -1.1296 38 1 3.2146 0.7610 -1.9766 39 1 5.8391 1.6201 -2.3196 40 1 4.4134 2.6814 -2.5638 41 1 5.5892 3.8994 -0.8513 42 1 6.1702 2.3954 -0.0612 43 1 4.9962 4.8934 1.5093 44 1 7.2532 4.2516 3.0547 45 1 6.6785 2.9192 4.1118 46 1 7.9486 5.0297 5.2284 47 1 6.4893 4.3648 6.0240 48 1 8.2837 8.5248 7.8207 49 1 2.9152 5.9281 3.9146 50 1 3.6263 5.6135 5.5157 51 1 2.6667 7.9387 5.2636 52 1 4.3942 7.9164 5.6918 53 1 3.8967 8.2554 4.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087593821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:40 Heat of formation + Delta-G solvation = -13.050170 kcal Electronic energy + Delta-G solvation = -29074.956716 eV Core-core repulsion = 25367.829413 eV Total energy + Delta-G solvation = -3707.127302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.34739 -38.87118 -37.53392 -34.77996 -34.07363 -32.50132 -32.11371 -30.98974 -30.13849 -28.89194 -27.02111 -25.76747 -24.42575 -22.74227 -22.22687 -22.12025 -20.82065 -20.35746 -20.16645 -19.18599 -17.36216 -16.99603 -16.56902 -16.00017 -15.54357 -15.08428 -14.82539 -14.66660 -14.58142 -14.04369 -13.61401 -13.49809 -13.30257 -13.08612 -13.04977 -12.98936 -12.75684 -12.45518 -12.23874 -12.05985 -11.96352 -11.78587 -11.55986 -11.49470 -11.35651 -11.11450 -11.07885 -11.06759 -10.88000 -10.83577 -10.63802 -10.35649 -10.26959 -10.04089 -9.82259 -9.57361 -9.31110 -8.74816 -8.59467 -8.48866 -7.00429 -5.95623 -3.28831 2.80310 3.07098 3.37061 3.50079 3.52859 3.83201 4.26343 4.34091 4.54972 4.59643 4.75717 4.82265 4.84367 4.90738 5.02286 5.12836 5.16474 5.20616 5.22752 5.26357 5.32274 5.39019 5.44005 5.51044 5.52234 5.55163 5.64609 5.69928 5.79246 5.83195 5.88602 5.92276 5.98008 5.98291 6.07911 6.12501 6.20656 6.36942 6.45735 6.55494 6.62628 6.64273 6.65591 6.78103 6.82356 6.84162 7.06402 7.36238 7.72424 7.76417 8.30904 8.46038 8.82528 9.67515 10.18116 11.19901 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.002969 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.916627 B = 9429.658225 C = 9729.870318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.507 5.507 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.118 4.118 8 C 0.054 3.946 9 H 0.078 0.922 10 C 0.520 3.480 11 O -0.519 6.519 12 N -0.719 5.719 13 C 0.136 3.864 14 H 0.095 0.905 15 C -0.139 4.139 16 C 0.110 3.890 17 N -0.599 5.599 18 C -0.233 4.233 19 H 0.095 0.905 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.880 3.120 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.159 3.841 27 H 0.045 0.955 28 C -0.124 4.124 29 C -0.153 4.153 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.397 0.603 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.263 0.737 49 H 0.041 0.959 50 H 0.055 0.945 51 H 0.030 0.970 52 H 0.095 0.905 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -12.988 -19.131 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.231 5.231 5 C -0.084 4.084 6 C -0.179 4.179 7 C -0.157 4.157 8 C -0.058 4.058 9 H 0.096 0.904 10 C 0.304 3.696 11 O -0.393 6.393 12 N -0.371 5.371 13 C 0.031 3.969 14 H 0.113 0.887 15 C -0.179 4.179 16 C -0.015 4.015 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.112 0.888 20 C -0.175 4.175 21 N -0.553 5.553 22 Si 0.710 3.290 23 H -0.214 1.214 24 H -0.231 1.231 25 H -0.196 1.196 26 C 0.051 3.949 27 H 0.062 0.938 28 C -0.164 4.164 29 C -0.210 4.210 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.231 0.769 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.049 0.951 52 H 0.114 0.886 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.861 -13.812 -17.983 24.726 hybrid contribution -0.176 0.129 -0.125 0.251 sum -10.037 -13.683 -18.108 24.816 Atomic orbital electron populations 1.21739 0.95705 1.01725 1.01733 1.21488 0.95188 0.96156 1.02761 1.22317 0.86761 0.97665 1.00569 1.63069 1.07877 1.20587 1.31540 1.22876 0.97929 0.98511 0.89116 1.22792 1.00216 0.97539 0.97392 1.22683 0.96308 1.01356 0.95335 1.22486 0.97784 0.91937 0.93580 0.90411 1.20275 0.77248 0.82267 0.89800 1.90693 1.51192 1.41100 1.56320 1.46008 1.66187 1.15330 1.09538 1.22052 0.96777 0.97368 0.80678 0.88670 1.23117 0.95987 0.99543 0.99249 1.21980 0.97434 0.87238 0.94838 1.44759 1.29855 1.05204 1.52710 1.18564 1.32606 0.82875 1.01914 0.88768 1.25100 0.98969 0.96201 0.97237 1.69804 1.33859 1.27557 1.24045 0.86984 0.78358 0.83223 0.80392 1.21403 1.23112 1.19638 1.21183 0.88856 0.91192 0.93647 0.93770 1.21892 0.96670 0.97846 0.99960 1.21959 1.00903 0.95158 1.03007 0.92550 0.92548 0.93042 0.92244 0.90804 0.90734 0.94962 0.90301 0.92402 0.90272 0.91235 0.89851 0.89864 0.76886 0.91075 0.91414 0.92229 0.95339 0.92711 0.93987 0.92591 0.95121 0.88619 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.05 5.95 -26.73 -0.16 -1.21 16 3 C 0.05 0.54 4.53 -3.82 -0.02 0.52 16 4 N -0.51 -5.53 4.34 -224.76 -0.98 -6.51 16 5 C 0.04 0.36 6.20 -2.84 -0.02 0.34 16 6 C -0.14 -0.98 6.94 -24.91 -0.17 -1.15 16 7 C -0.12 -0.99 6.47 -24.59 -0.16 -1.15 16 8 C 0.05 0.57 2.81 -67.34 -0.19 0.38 16 9 H 0.08 0.70 7.81 -51.93 -0.41 0.30 16 10 C 0.52 7.31 7.19 -10.99 -0.08 7.23 16 11 O -0.52 -9.51 16.13 5.55 0.09 -9.42 16 12 N -0.72 -9.62 5.16 -52.03 -0.27 -9.89 16 13 C 0.14 2.29 2.85 -66.10 -0.19 2.10 16 14 H 0.10 1.77 7.27 -51.93 -0.38 1.39 16 15 C -0.14 -2.45 6.77 -24.58 -0.17 -2.62 16 16 C 0.11 2.38 4.77 -2.53 -0.01 2.37 16 17 N -0.60 -13.70 2.87 -162.57 -0.47 -14.16 16 18 C -0.23 -6.17 7.77 -15.06 -0.12 -6.29 16 19 H 0.09 2.64 7.20 -52.49 -0.38 2.27 16 20 C 0.02 0.67 5.45 -17.43 -0.10 0.58 16 21 N -0.91 -27.31 13.97 55.49 0.78 -26.54 16 22 Si 0.88 22.42 24.41 -169.99 -4.15 18.27 16 23 H -0.29 -7.17 6.94 56.52 0.39 -6.77 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.27 -6.82 6.36 56.52 0.36 -6.46 16 26 C 0.16 2.96 3.02 -66.95 -0.20 2.76 16 27 H 0.04 0.80 7.72 -51.93 -0.40 0.40 16 28 C -0.12 -2.27 5.49 -26.73 -0.15 -2.41 16 29 C -0.15 -2.90 8.88 37.16 0.33 -2.57 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.48 7.09 -51.93 -0.37 0.11 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.03 0.27 7.98 -51.93 -0.41 -0.14 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.42 6.87 -51.93 -0.36 0.06 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.82 8.05 -51.92 -0.42 0.40 16 43 H 0.40 4.32 8.37 -40.82 -0.34 3.98 16 44 H 0.07 1.18 8.14 -51.94 -0.42 0.75 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.35 7.22 -51.93 -0.38 0.98 16 47 H 0.03 0.66 5.23 -51.93 -0.27 0.39 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.03 0.51 8.14 -51.94 -0.42 0.09 16 52 H 0.10 2.16 5.40 -51.93 -0.28 1.88 16 53 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -31.70 398.86 -9.92 -41.62 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -9.91 Total: 2.50 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.02 Total: -1.89 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.94 Total: -57.09 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.15 Total: 18.27 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.70 -9.92 -41.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087593821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.573 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds