Wall clock time and date at job start Tue Mar 31 2020 13:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46863 * 119.99875 * 2 1 3 5 5 H 1.08991 * 109.47079 * 57.89319 * 4 2 1 6 6 C 1.50703 * 109.47119 * 297.88830 * 4 2 1 7 7 O 1.21284 * 119.99907 * 268.59464 * 6 4 2 8 8 N 1.34778 * 119.99941 * 88.60015 * 6 4 2 9 9 C 1.46499 * 119.99658 * 174.89041 * 8 6 4 10 10 C 1.53950 * 113.57800 * 252.71406 * 9 8 6 11 11 C 1.52909 * 86.78277 * 220.66860 * 10 9 8 12 12 C 1.52902 * 121.13584 * 150.61861 * 11 10 9 13 13 C 1.53951 * 86.78379 * 100.82234 * 12 11 10 14 14 N 1.46502 * 113.58200 * 139.33865 * 13 12 11 15 15 C 1.36926 * 119.99991 * 107.28118 * 14 13 12 16 16 H 1.08005 * 120.00689 * 359.97438 * 15 14 13 17 17 C 1.38818 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99734 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00258 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47405 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47402 * 120.00119 * 19 17 15 22 22 H 1.48505 * 109.47119 * 240.00190 * 19 17 15 23 23 C 1.52908 * 121.13537 * 259.18072 * 11 10 9 24 24 C 1.52911 * 88.04088 * 24.90003 * 11 10 9 25 25 N 1.46902 * 109.46791 * 177.89130 * 4 2 1 26 26 C 1.46895 * 111.00084 * 181.16820 * 25 4 2 27 27 C 1.46898 * 111.00126 * 305.11896 * 25 4 2 28 28 H 1.08998 * 109.46836 * 185.78275 * 1 2 3 29 29 H 1.08993 * 109.46955 * 305.78587 * 1 2 3 30 30 H 1.09007 * 109.46766 * 65.78713 * 1 2 3 31 31 H 1.09001 * 109.47026 * 240.00209 * 2 1 3 32 32 H 1.08999 * 109.46868 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47108 * 300.00255 * 3 2 1 34 34 H 1.09003 * 109.46981 * 59.99448 * 3 2 1 35 35 H 0.96999 * 119.99748 * 355.16297 * 8 6 4 36 36 H 1.08998 * 112.82738 * 23.90917 * 9 8 6 37 37 H 1.08999 * 113.66450 * 335.14420 * 10 9 8 38 38 H 1.08999 * 113.65702 * 106.19550 * 10 9 8 39 39 H 1.08998 * 113.66632 * 215.29592 * 12 11 10 40 40 H 1.09001 * 113.66354 * 346.35248 * 12 11 10 41 41 H 1.09010 * 113.57534 * 270.13115 * 13 12 11 42 42 H 0.96994 * 119.99360 * 287.28015 * 14 13 12 43 43 H 0.96996 * 119.99615 * 179.97438 * 18 17 15 44 44 H 1.08996 * 113.66291 * 13.65403 * 23 11 10 45 45 H 1.08999 * 113.66171 * 144.61789 * 23 11 10 46 46 H 1.08998 * 113.66133 * 220.62592 * 24 11 10 47 47 H 1.09003 * 113.66171 * 89.57428 * 24 11 10 48 48 H 1.09001 * 109.47452 * 64.36448 * 26 25 4 49 49 H 1.09000 * 109.47512 * 184.36727 * 26 25 4 50 50 H 1.09008 * 109.47204 * 304.36772 * 26 25 4 51 51 H 1.09006 * 109.47150 * 60.00152 * 27 25 4 52 52 H 1.08995 * 109.47650 * 180.02562 * 27 25 4 53 53 H 1.09007 * 109.47411 * 300.00524 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6462 -1.7373 1.2684 6 6 1.5808 0.0188 2.4792 7 8 2.2830 0.8793 2.9666 8 7 0.3900 -0.2756 3.0375 9 6 -0.0073 0.3627 4.2948 10 6 0.0360 -0.5851 5.5072 11 6 -1.2694 0.0713 5.9580 12 6 -2.3010 -0.7027 6.7793 13 6 -1.7430 0.0319 8.0118 14 7 -2.7778 0.4665 8.9534 15 6 -2.9279 -0.1791 10.1516 16 1 -2.2837 -1.0090 10.4024 17 6 -3.9087 0.2322 11.0436 18 7 -4.6941 1.2432 10.7378 19 14 -4.1140 -0.6489 12.6778 20 1 -3.1153 -1.7433 12.7791 21 1 -3.9078 0.3144 13.7890 22 1 -5.4826 -1.2189 12.7644 23 6 -1.2801 1.1415 7.0502 24 6 -1.5321 0.4316 4.4954 25 7 3.5081 -0.7655 1.2241 26 6 4.0336 -1.4767 2.3971 27 6 3.9952 -1.3730 -0.0216 28 1 -0.3633 -1.0224 0.1035 29 1 -0.3633 0.6009 0.8336 30 1 -0.3633 0.4215 -0.9373 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 -0.2023 -0.9131 2.6088 36 1 0.4982 1.3133 4.4646 37 1 -0.0716 -1.6373 5.2439 38 1 0.8742 -0.3985 6.1785 39 1 -3.3327 -0.4413 6.5442 40 1 -2.1286 -1.7788 6.7963 41 1 -0.9214 -0.4943 8.4981 42 1 -3.3565 1.2115 8.7281 43 1 -5.3797 1.5304 11.3610 44 1 -0.2922 1.5385 7.2833 45 1 -2.0239 1.9221 6.8904 46 1 -1.9467 1.4303 4.3585 47 1 -2.0805 -0.3349 3.9478 48 1 3.7166 -2.5190 2.3623 49 1 5.1225 -1.4278 2.3940 50 1 3.6516 -1.0109 3.3056 51 1 3.6486 -0.7858 -0.8720 52 1 5.0849 -1.3938 -0.0139 53 1 3.6133 -2.3908 -0.1031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121728561.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:42 Heat of formation + Delta-G solvation = 0.425096 kcal Electronic energy + Delta-G solvation = -28305.155290 eV Core-core repulsion = 24598.612319 eV Total energy + Delta-G solvation = -3706.542971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83372 -40.90161 -38.30203 -37.09831 -35.53819 -35.10413 -33.48395 -31.42618 -28.93595 -28.40125 -27.88319 -26.76644 -26.65755 -26.05563 -24.33856 -23.21962 -22.14585 -21.44431 -20.39281 -19.41741 -18.61744 -18.05422 -17.59792 -16.99588 -16.72951 -16.34387 -16.09225 -15.84549 -15.55356 -15.40479 -15.24562 -14.81910 -14.44731 -14.26160 -13.88245 -13.63583 -13.62658 -13.54778 -13.47599 -13.19185 -13.08185 -13.02273 -12.94610 -12.85356 -12.75957 -12.57715 -12.29802 -12.23351 -12.04951 -11.90261 -11.87392 -11.80765 -11.68761 -11.35100 -11.06255 -10.83860 -10.81273 -10.49389 -9.91980 -9.26939 -8.97306 -7.94988 -5.22971 1.46715 1.47447 1.57542 1.66258 2.14571 2.56104 2.97548 3.36382 3.50557 3.53008 3.62821 3.72152 3.84089 3.87744 3.98857 4.02182 4.19515 4.25410 4.28246 4.34613 4.41557 4.47028 4.52552 4.58484 4.61322 4.66577 4.75329 4.79742 4.81211 4.83038 4.93422 4.98596 5.00102 5.02630 5.04069 5.06302 5.07629 5.08887 5.14993 5.19931 5.28165 5.40047 5.44503 5.50329 5.57032 5.66061 5.70879 5.92870 6.06424 6.27764 6.66004 7.33180 7.35434 8.11063 8.34065 9.28657 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.029581 B = 0.002129 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.330214 B =13148.649880 C =13591.738484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.137 4.137 4 C 0.073 3.927 5 H 0.078 0.922 6 C 0.521 3.479 7 O -0.563 6.563 8 N -0.709 5.709 9 C 0.133 3.867 10 C -0.118 4.118 11 C -0.090 4.090 12 C -0.137 4.137 13 C 0.147 3.853 14 N -0.729 5.729 15 C -0.241 4.241 16 H 0.075 0.925 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.293 1.293 23 C -0.123 4.123 24 C -0.117 4.117 25 N -0.543 5.543 26 C 0.025 3.975 27 C 0.022 3.978 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.029 0.971 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.037 0.963 49 H 0.076 0.924 50 H 0.047 0.953 51 H 0.082 0.918 52 H 0.075 0.925 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.254 -7.981 -28.446 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.101 4.101 3 C -0.194 4.194 4 C -0.038 4.038 5 H 0.095 0.905 6 C 0.307 3.693 7 O -0.440 6.440 8 N -0.361 5.361 9 C 0.027 3.973 10 C -0.157 4.157 11 C -0.091 4.091 12 C -0.177 4.177 13 C 0.037 3.963 14 N -0.367 5.367 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.162 4.162 24 C -0.155 4.155 25 N -0.267 5.267 26 C -0.123 4.123 27 C -0.125 4.125 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.250 0.750 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.125 0.875 48 H 0.055 0.945 49 H 0.095 0.905 50 H 0.066 0.934 51 H 0.101 0.899 52 H 0.094 0.906 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.999 -7.020 -27.910 32.454 hybrid contribution -1.069 -0.798 1.235 1.818 sum 13.930 -7.818 -26.675 31.092 Atomic orbital electron populations 1.21996 0.93517 1.03035 1.02874 1.21196 0.96579 0.96469 0.95824 1.21709 1.01544 0.95534 1.00656 1.21813 0.89519 0.98803 0.93693 0.90470 1.20837 0.80965 0.82747 0.84723 1.90694 1.55618 1.33301 1.64372 1.46029 1.19367 1.46190 1.24547 1.22275 0.95605 0.96591 0.82808 1.23158 0.95817 0.99940 0.96772 1.21892 0.96670 0.97325 0.93256 1.23383 0.97962 0.99050 0.97318 1.21917 0.90888 0.95325 0.88153 1.42614 1.38411 1.38415 1.17239 1.19734 1.12646 1.10523 0.94370 0.90663 1.25585 0.99134 0.99906 1.02516 1.69826 1.23897 1.30671 1.37767 0.85075 0.77330 0.77765 0.79621 1.19026 1.22168 1.22003 1.23076 1.00831 0.96761 0.95562 1.23134 0.94628 1.02978 0.94732 1.61660 1.06598 1.54709 1.03767 1.22379 1.01295 0.95791 0.92832 1.22541 1.01306 0.97597 0.91077 0.90570 0.93338 0.90914 0.87911 0.92546 0.91915 0.95131 0.75037 0.89053 0.88142 0.92040 0.91512 0.91836 0.91337 0.79494 0.94068 0.91811 0.90775 0.90889 0.87487 0.94480 0.90495 0.93407 0.89930 0.90644 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.36 71.98 0.60 -0.85 16 2 C -0.08 -0.97 2.27 -10.79 -0.02 -0.99 16 3 C -0.14 -2.30 8.66 71.98 0.62 -1.68 16 4 C 0.07 1.09 1.67 44.17 0.07 1.16 16 5 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 6 C 0.52 10.91 4.21 87.66 0.37 11.28 16 7 O -0.56 -17.10 14.43 -3.04 -0.04 -17.14 16 8 N -0.71 -12.05 4.48 -439.51 -1.97 -14.02 16 9 C 0.13 2.84 4.27 45.63 0.19 3.03 16 10 C -0.12 -2.69 7.64 30.88 0.24 -2.45 16 11 C -0.09 -2.38 1.11 -52.32 -0.06 -2.44 16 12 C -0.14 -4.47 7.64 30.88 0.24 -4.24 16 13 C 0.15 5.84 4.48 45.63 0.20 6.05 16 14 N -0.73 -37.47 5.40 -319.91 -1.73 -39.20 16 15 C -0.24 -13.57 9.97 84.04 0.84 -12.73 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 18 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 19 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 C -0.12 -4.10 7.59 30.88 0.23 -3.86 16 24 C -0.12 -2.40 7.59 30.88 0.23 -2.16 16 25 N -0.54 -8.97 3.92 -927.72 -3.64 -12.61 16 26 C 0.03 0.43 9.30 127.69 1.19 1.62 16 27 C 0.02 0.23 9.08 127.69 1.16 1.38 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.61 6.87 -2.39 -0.02 0.59 16 30 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.10 0.83 6.21 -2.39 -0.01 0.82 16 32 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.03 0.69 6.65 -2.39 -0.02 0.67 16 35 H 0.41 4.53 8.27 -92.71 -0.77 3.76 16 36 H 0.09 2.46 7.42 -2.39 -0.02 2.44 16 37 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.77 8.10 -2.38 -0.02 2.75 16 42 H 0.37 20.57 7.92 -92.71 -0.73 19.83 16 43 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 48 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 50 H 0.05 1.07 6.41 -2.38 -0.02 1.06 16 51 H 0.08 0.70 6.17 -2.38 -0.01 0.69 16 52 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.04 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -71.28 409.56 0.89 -70.40 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.62 Total: 34.85 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 6.58 Total: -11.06 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -7.06 Total: -125.73 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.04 Total: -17.14 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -71.28 0.89 -70.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121728561.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.822 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds