Wall clock time and date at job start Tue Mar 31 2020 14:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 N 1.46498 * 109.47087 * 120.00201 * 2 1 3 5 5 C 1.34781 * 119.99968 * 154.99947 * 4 2 1 6 6 O 1.21585 * 119.99913 * 5.06259 * 5 4 2 7 7 N 1.34768 * 119.99957 * 185.06556 * 5 4 2 8 8 C 1.46929 * 120.63891 * 354.97438 * 7 5 4 9 9 C 1.53189 * 108.79438 * 126.34192 * 8 7 5 10 10 C 1.53051 * 109.32158 * 54.63490 * 9 8 7 11 11 C 1.52967 * 109.54726 * 298.73567 * 10 9 8 12 12 C 1.53061 * 109.52673 * 301.31932 * 11 10 9 13 13 C 1.53139 * 109.14234 * 182.24628 * 12 11 10 14 14 C 1.53038 * 109.26736 * 57.60220 * 13 12 11 15 15 N 1.46846 * 109.54553 * 300.81654 * 14 13 12 16 16 C 1.46907 * 110.99783 * 185.83615 * 15 14 13 17 17 C 1.50700 * 109.46945 * 66.04978 * 16 15 14 18 18 H 1.08000 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00167 * 179.97438 * 17 16 15 20 20 N 1.31504 * 120.00292 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99522 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47445 * 90.00212 * 21 19 17 23 23 H 1.48505 * 109.46895 * 209.99847 * 21 19 17 24 24 H 1.48503 * 109.47461 * 329.99496 * 21 19 17 25 25 C 1.46863 * 111.20332 * 61.74074 * 15 14 13 26 26 C 1.46942 * 120.63785 * 174.94567 * 7 5 4 27 27 H 1.08998 * 109.46958 * 300.00026 * 1 2 3 28 28 H 1.09001 * 109.47242 * 59.99711 * 1 2 3 29 29 H 1.08997 * 109.47627 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47111 * 240.00453 * 2 1 3 31 31 H 1.08998 * 109.47062 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47162 * 300.00338 * 3 2 1 33 33 H 1.08998 * 109.47089 * 60.00053 * 3 2 1 34 34 H 0.96994 * 120.00354 * 334.99721 * 4 2 1 35 35 H 1.09000 * 109.58209 * 246.13134 * 8 7 5 36 36 H 1.09000 * 109.57807 * 6.40721 * 8 7 5 37 37 H 1.08995 * 109.49722 * 174.59797 * 9 8 7 38 38 H 1.09000 * 109.49440 * 294.68718 * 9 8 7 39 39 H 1.09001 * 109.45919 * 178.70839 * 10 9 8 40 40 H 1.09002 * 109.45689 * 58.75972 * 10 9 8 41 41 H 1.09006 * 109.52664 * 62.35227 * 12 11 10 42 42 H 1.08997 * 109.53144 * 302.15162 * 12 11 10 43 43 H 1.09002 * 109.50494 * 297.66433 * 13 12 11 44 44 H 1.08999 * 109.53601 * 177.56037 * 13 12 11 45 45 H 1.09000 * 109.46165 * 60.84184 * 14 13 12 46 46 H 1.09004 * 109.45710 * 180.79609 * 14 13 12 47 47 H 1.09003 * 109.46583 * 186.04697 * 16 15 14 48 48 H 1.08989 * 109.47286 * 306.04785 * 16 15 14 49 49 H 0.97000 * 120.00270 * 179.97438 * 20 19 17 50 50 H 1.08993 * 109.47112 * 178.31926 * 25 15 14 51 51 H 1.09003 * 109.46476 * 58.33648 * 25 15 14 52 52 H 1.09005 * 109.58739 * 113.80131 * 26 7 5 53 53 H 1.09002 * 109.70393 * 353.44316 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9738 -1.1207 0.2346 7 7 3.6491 -1.9813 2.2562 8 6 2.8210 -2.0673 3.4669 9 6 2.5958 -3.5439 3.8070 10 6 3.9493 -4.2495 3.9203 11 6 4.6831 -4.1672 2.5807 12 6 3.8298 -4.8176 1.4891 13 6 4.5961 -4.7806 0.1638 14 6 5.9372 -5.4975 0.3358 15 7 6.7161 -4.8362 1.3905 16 6 8.0644 -5.4111 1.4882 17 6 8.8336 -5.1046 0.2291 18 1 8.3673 -4.5397 -0.5645 19 6 10.1326 -5.5455 0.0902 20 7 10.8040 -5.2776 -1.0084 21 14 10.9388 -6.5232 1.4626 22 1 10.6875 -7.9715 1.2521 23 1 12.4019 -6.2689 1.4580 24 1 10.3681 -6.1064 2.7687 25 6 6.0217 -4.9005 2.6830 26 6 4.9313 -2.6984 2.2254 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.4623 -0.7387 1.9894 35 1 3.3319 -1.5755 4.2946 36 1 1.8619 -1.5809 3.2887 37 1 2.0644 -3.6218 4.7554 38 1 2.0060 -4.0128 3.0194 39 1 3.7926 -5.2952 4.1849 40 1 4.5475 -3.7656 4.6924 41 1 2.8933 -4.2698 1.3838 42 1 3.6191 -5.8524 1.7594 43 1 4.7717 -3.7447 -0.1262 44 1 4.0124 -5.2809 -0.6089 45 1 5.7606 -6.5369 0.6123 46 1 6.4915 -5.4606 -0.6021 47 1 8.5823 -4.9792 2.3446 48 1 7.9906 -6.4911 1.6151 49 1 11.7180 -5.5874 -1.1059 50 1 6.6364 -4.4289 3.4496 51 1 5.8454 -5.9427 2.9492 52 1 5.6143 -2.2572 2.9514 53 1 5.3656 -2.6320 1.2278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941545.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:52 Heat of formation + Delta-G solvation = -50.886062 kcal Electronic energy + Delta-G solvation = -29865.680342 eV Core-core repulsion = 26156.912352 eV Total energy + Delta-G solvation = -3708.767990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90269 -40.32807 -37.99433 -36.86993 -35.37561 -34.24009 -33.29713 -32.24925 -31.80526 -29.59687 -28.05934 -27.27867 -26.34558 -25.41868 -23.52621 -23.19972 -22.45567 -21.48206 -20.92250 -19.43327 -18.85809 -18.83383 -17.36268 -17.01089 -16.43959 -16.23922 -15.93582 -15.73461 -15.40791 -15.34509 -15.28161 -14.91101 -14.88490 -14.62150 -14.29072 -14.16511 -13.87850 -13.67416 -13.44784 -13.20767 -13.13128 -13.02748 -12.85208 -12.70832 -12.57659 -12.47616 -12.27203 -12.06351 -11.95698 -11.84000 -11.78219 -11.69883 -11.61939 -11.35846 -11.13915 -10.95659 -10.85519 -10.77922 -10.16365 -9.36903 -8.95655 -8.28376 -6.32222 1.32602 1.35540 1.46677 1.71006 2.23167 2.33936 3.00464 3.03648 3.19341 3.70458 3.81189 3.85717 3.97338 4.08456 4.15214 4.19731 4.23199 4.33998 4.34489 4.37525 4.55454 4.59127 4.65919 4.68275 4.71478 4.76568 4.79434 4.82774 4.83838 4.90862 4.95715 4.97110 4.99688 5.03005 5.08464 5.11694 5.17141 5.19039 5.26562 5.27987 5.34469 5.36699 5.51112 5.54929 5.56078 5.65686 5.68293 6.01364 6.07605 6.41026 6.70360 6.74848 7.09447 7.31190 7.67615 8.88981 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.003417 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.827234 B = 8192.184791 C = 9076.412686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 C -0.159 4.159 4 N -0.729 5.729 5 C 0.697 3.303 6 O -0.638 6.638 7 N -0.623 5.623 8 C 0.106 3.894 9 C -0.126 4.126 10 C -0.104 4.104 11 C -0.058 4.058 12 C -0.090 4.090 13 C -0.113 4.113 14 C 0.072 3.928 15 N -0.543 5.543 16 C 0.175 3.825 17 C -0.517 4.517 18 H 0.029 0.971 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.953 3.047 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.246 1.246 25 C 0.064 3.936 26 C 0.151 3.849 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.041 0.959 47 H 0.032 0.968 48 H -0.014 1.014 49 H 0.267 0.733 50 H 0.073 0.927 51 H 0.037 0.963 52 H 0.055 0.945 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.384 6.752 14.668 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 C -0.217 4.217 4 N -0.389 5.389 5 C 0.398 3.602 6 O -0.519 6.519 7 N -0.359 5.359 8 C -0.016 4.016 9 C -0.164 4.164 10 C -0.142 4.142 11 C -0.059 4.059 12 C -0.127 4.127 13 C -0.150 4.150 14 C -0.056 4.056 15 N -0.268 5.268 16 C 0.048 3.952 17 C -0.555 4.555 18 H 0.047 0.953 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.169 1.169 25 C -0.064 4.064 26 C 0.027 3.973 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.004 0.996 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.055 0.945 52 H 0.073 0.927 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.678 7.331 13.763 30.901 hybrid contribution 1.193 -1.160 0.013 1.664 sum -25.485 6.171 13.777 29.620 Atomic orbital electron populations 1.21998 0.91070 1.03173 1.04269 1.20858 0.95676 0.92192 0.86849 1.22155 1.00093 0.96268 1.03198 1.45287 1.16044 1.59519 1.18018 1.16160 0.82465 0.78871 0.82664 1.90934 1.56217 1.67451 1.37303 1.47327 1.22249 1.51156 1.15173 1.21941 0.95157 0.98265 0.86268 1.21925 0.96901 0.94068 1.03545 1.21527 0.96383 1.01974 0.94304 1.20841 0.94216 0.93844 0.97003 1.21499 0.97661 1.00499 0.93060 1.21583 0.94726 1.00014 0.98719 1.21832 0.93969 0.94653 0.95158 1.61717 1.02467 1.56947 1.05619 1.19891 0.87214 0.92073 0.96039 1.21282 0.98030 1.34005 1.02191 0.95282 1.25929 0.97686 0.97198 0.98472 1.70073 1.11658 1.48470 1.29003 0.85629 0.77570 0.79022 0.80161 1.19215 1.20669 1.16902 1.22170 0.94691 0.98583 0.90989 1.21248 0.83383 0.90363 1.02268 0.90225 0.89857 0.91788 0.92826 0.95551 0.90431 0.90988 0.75250 0.90209 0.88347 0.87593 0.91419 0.90502 0.90822 0.91162 0.91199 0.93601 0.91492 0.95598 0.94036 0.95024 0.99594 0.92458 0.90896 0.94466 0.92663 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.38 71.98 0.68 -0.76 16 2 C 0.15 2.77 3.15 44.99 0.14 2.91 16 3 C -0.16 -2.92 9.48 71.98 0.68 -2.24 16 4 N -0.73 -14.04 4.99 -457.82 -2.28 -16.33 16 5 C 0.70 20.34 8.26 179.06 1.48 21.82 16 6 O -0.64 -26.45 15.45 -3.98 -0.06 -26.51 16 7 N -0.62 -15.20 2.37 -836.97 -1.99 -17.18 16 8 C 0.11 1.39 6.43 86.36 0.56 1.94 16 9 C -0.13 -1.43 5.74 30.67 0.18 -1.26 16 10 C -0.10 -1.72 4.72 30.60 0.14 -1.58 16 11 C -0.06 -1.50 0.52 -52.14 -0.03 -1.53 16 12 C -0.09 -2.40 4.25 30.66 0.13 -2.27 16 13 C -0.11 -3.99 5.75 30.65 0.18 -3.81 16 14 C 0.07 3.05 5.29 86.33 0.46 3.50 16 15 N -0.54 -23.76 4.03 -901.01 -3.63 -27.39 16 16 C 0.17 8.78 3.79 85.56 0.32 9.10 16 17 C -0.52 -31.71 8.99 25.60 0.23 -31.48 16 18 H 0.03 2.03 7.38 -2.91 -0.02 2.00 16 19 C 0.00 0.24 5.47 84.66 0.46 0.70 16 20 N -0.95 -62.25 13.96 21.45 0.30 -61.95 16 21 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 25 C 0.06 2.09 4.19 86.30 0.36 2.45 16 26 C 0.15 4.69 4.69 86.34 0.40 5.10 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 1.36 7.65 -2.39 -0.02 1.34 16 31 H 0.03 0.68 8.09 -2.39 -0.02 0.66 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.41 4.73 6.06 -92.71 -0.56 4.17 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 0.74 5.56 -2.39 -0.01 0.73 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.86 6.40 -2.39 -0.02 0.84 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.73 6.06 -2.38 -0.01 1.72 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.94 6.46 -2.39 -0.02 1.93 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.04 2.09 6.72 -2.39 -0.02 2.08 16 47 H 0.03 1.56 7.04 -2.39 -0.02 1.54 16 48 H -0.01 -0.66 7.55 -2.39 -0.02 -0.68 16 49 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 50 H 0.07 2.30 8.01 -2.39 -0.02 2.28 16 51 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 53 H 0.06 2.73 4.82 -2.39 -0.01 2.72 16 Total: -1.00 -82.31 389.21 0.85 -81.46 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.26 Total: 17.92 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.37 Total: 2.58 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -7.60 Total: -122.85 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -82.31 0.85 -81.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941545.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.573 kcal (2) G-P(sol) polarization free energy of solvation -82.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds