Wall clock time and date at job start Tue Mar 31 2020 14:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47488 * 2 1 4 4 C 1.53004 * 109.47544 * 239.99856 * 2 1 3 5 5 C 1.50695 * 109.46929 * 60.00031 * 4 2 1 6 6 H 1.08009 * 120.00305 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99903 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99962 * 180.02562 * 7 5 4 9 9 Si 1.86790 * 119.99947 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47566 * 90.00287 * 9 7 5 11 11 H 1.48510 * 109.47298 * 209.99914 * 9 7 5 12 12 H 1.48501 * 109.47290 * 329.99682 * 9 7 5 13 13 C 1.53007 * 109.46863 * 119.99910 * 2 1 3 14 14 N 1.46903 * 109.46936 * 294.50125 * 13 2 1 15 15 C 1.46956 * 110.99849 * 86.75802 * 14 13 2 16 16 C 1.53048 * 109.36273 * 183.18511 * 15 14 13 17 17 N 1.46950 * 109.36802 * 301.60008 * 16 15 14 18 18 C 1.46898 * 111.00261 * 183.19002 * 17 16 15 19 19 C 1.53002 * 109.47340 * 169.99924 * 18 17 16 20 20 N 1.46898 * 109.47340 * 179.97438 * 19 18 17 21 21 C 1.48535 * 110.99875 * 52.60088 * 20 19 18 22 22 C 1.54941 * 103.22547 * 159.72418 * 21 20 19 23 23 C 1.54596 * 102.91967 * 322.58560 * 22 21 20 24 24 C 1.47896 * 111.00099 * 170.00084 * 20 19 18 25 25 C 1.46955 * 110.88185 * 59.31647 * 17 16 15 26 26 C 1.46959 * 110.99670 * 210.55664 * 14 13 2 27 27 H 1.08996 * 109.47152 * 312.00462 * 1 2 3 28 28 H 1.09003 * 109.46823 * 71.99426 * 1 2 3 29 29 H 1.08992 * 109.47276 * 191.99631 * 1 2 3 30 30 H 1.08992 * 109.47599 * 175.43794 * 3 2 1 31 31 H 1.09000 * 109.46812 * 295.43774 * 3 2 1 32 32 H 1.09008 * 109.46952 * 55.43392 * 3 2 1 33 33 H 1.08993 * 109.47302 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.46406 * 300.00365 * 4 2 1 35 35 H 0.96999 * 119.99831 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46820 * 174.50463 * 13 2 1 37 37 H 1.08997 * 109.47062 * 54.50047 * 13 2 1 38 38 H 1.08999 * 109.48986 * 63.21520 * 15 14 13 39 39 H 1.09001 * 109.48488 * 303.15630 * 15 14 13 40 40 H 1.09004 * 109.48575 * 181.62583 * 16 15 14 41 41 H 1.09000 * 109.48994 * 61.56731 * 16 15 14 42 42 H 1.08998 * 109.47088 * 50.00062 * 18 17 16 43 43 H 1.08995 * 109.46986 * 289.99823 * 18 17 16 44 44 H 1.08997 * 109.47150 * 59.99537 * 19 18 17 45 45 H 1.09004 * 109.47033 * 300.00024 * 19 18 17 46 46 H 1.08995 * 110.66756 * 278.15706 * 21 20 19 47 47 H 1.08995 * 110.66663 * 41.28978 * 21 20 19 48 48 H 1.08996 * 110.72149 * 204.22949 * 22 21 20 49 49 H 1.08996 * 110.72306 * 80.94559 * 22 21 20 50 50 H 1.09005 * 110.31309 * 263.04151 * 23 22 21 51 51 H 1.09001 * 110.30875 * 140.87626 * 23 22 21 52 52 H 1.09007 * 109.91557 * 333.50349 * 24 20 19 53 53 H 1.08994 * 109.91909 * 94.60281 * 24 20 19 54 54 H 1.09001 * 109.48751 * 60.64906 * 25 17 16 55 55 H 1.09000 * 109.49334 * 180.71399 * 25 17 16 56 56 H 1.09001 * 109.48514 * 296.77764 * 26 14 13 57 57 H 1.08999 * 109.48973 * 56.84389 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 1.4326 0.1380 -4.8058 9 14 2.9433 -2.0018 -3.9032 10 1 2.0839 -3.2120 -3.9486 11 1 3.7354 -1.9099 -5.1561 12 1 3.8637 -2.0915 -2.7413 13 6 2.0399 -0.7213 1.2493 14 7 1.6616 0.0437 2.4451 15 6 0.3163 -0.3287 2.9046 16 6 -0.0711 0.5441 4.1006 17 7 0.9168 0.3665 5.1738 18 6 0.5385 1.1313 6.3696 19 6 1.4421 0.7317 7.5378 20 7 1.0642 1.4970 8.7333 21 6 -0.3902 1.3716 9.0078 22 6 -0.5031 1.7575 10.5042 23 6 0.7750 1.1408 11.1175 24 6 1.7481 0.9737 9.9357 25 6 2.2621 0.7388 4.7143 26 6 2.6496 -0.1341 3.5183 27 1 -0.3633 0.6877 0.7636 28 1 -0.3633 0.3177 -0.9774 29 1 -0.3633 -1.0051 0.2136 30 1 3.1269 1.4436 0.0817 31 1 1.7450 1.9321 -0.9281 32 1 1.6115 1.9794 0.8463 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2491 35 1 1.6664 -0.1939 -5.6868 36 1 3.1255 -0.8073 1.2015 37 1 1.5984 -1.7165 1.2999 38 1 0.3110 -1.3771 3.2026 39 1 -0.3991 -0.1766 2.0963 40 1 -1.0568 0.2501 4.4612 41 1 -0.0924 1.5904 3.7955 42 1 -0.4998 0.9180 6.6239 43 1 0.6522 2.1969 6.1703 44 1 2.4803 0.9449 7.2835 45 1 1.3284 -0.3339 7.7370 46 1 -0.9598 2.0639 8.3880 47 1 -0.7247 0.3465 8.8486 48 1 -1.3955 1.3179 10.9496 49 1 -0.5045 2.8408 10.6240 50 1 0.5511 0.1715 11.5632 51 1 1.1984 1.8126 11.8642 52 1 1.9869 -0.0809 9.7977 53 1 2.6610 1.5400 10.1197 54 1 2.2674 1.7872 4.4162 55 1 2.9776 0.5866 5.5225 56 1 2.6708 -1.1803 3.8234 57 1 3.6352 0.1600 3.1576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119545467.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:13 Heat of formation + Delta-G solvation = -6.323356 kcal Electronic energy + Delta-G solvation = -28628.069024 eV Core-core repulsion = 25057.066512 eV Total energy + Delta-G solvation = -3571.002511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 323.263 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72990 -39.84859 -38.42328 -35.96854 -34.31833 -33.26406 -31.95228 -30.25281 -29.77161 -29.18322 -28.03634 -27.31008 -25.43565 -24.54364 -23.76611 -23.08610 -21.71162 -21.27170 -20.68253 -19.47474 -18.85504 -17.50068 -17.02120 -16.67497 -16.30275 -16.17497 -16.01595 -16.00475 -15.53186 -15.23274 -14.97809 -14.87497 -14.62114 -14.50110 -14.09776 -14.02164 -13.81510 -13.63404 -13.37478 -13.16660 -12.81602 -12.76565 -12.72897 -12.48751 -12.30407 -12.26082 -12.21119 -12.14329 -12.09520 -11.98813 -11.84388 -11.75751 -11.67233 -11.45995 -11.41936 -11.28725 -10.88638 -10.70788 -10.67964 -9.42376 -9.36281 -9.11352 -8.20519 -6.20366 1.36025 1.37942 1.49032 2.40330 2.67044 2.99996 3.14353 3.27900 3.68920 3.77761 3.93933 3.97661 4.04094 4.05727 4.19914 4.20795 4.24536 4.35926 4.37936 4.41654 4.44163 4.50382 4.55669 4.61607 4.63466 4.70838 4.75732 4.82463 4.83393 4.85980 4.90766 4.93346 4.95384 4.96969 4.98907 5.02996 5.04944 5.07917 5.12142 5.15195 5.20565 5.25100 5.31527 5.41353 5.48078 5.56604 5.65276 5.77804 5.85262 5.88694 5.93727 6.02067 6.12344 6.24685 6.28243 6.44406 6.86643 7.41609 8.95646 Molecular weight = 323.26amu Principal moments of inertia in cm(-1) A = 0.039587 B = 0.002005 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.125708 B =13962.245361 C =14233.027398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.043 4.043 3 C -0.103 4.103 4 C -0.003 4.003 5 C -0.501 4.501 6 H 0.044 0.956 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.249 1.249 13 C 0.075 3.925 14 N -0.537 5.537 15 C 0.044 3.956 16 C 0.065 3.935 17 N -0.544 5.544 18 C 0.065 3.935 19 C 0.059 3.941 20 N -0.531 5.531 21 C 0.030 3.970 22 C -0.123 4.123 23 C -0.129 4.129 24 C 0.033 3.967 25 C 0.063 3.937 26 C 0.058 3.942 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.044 0.956 53 H 0.078 0.922 54 H 0.034 0.966 55 H 0.090 0.910 56 H 0.036 0.964 57 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -0.153 33.573 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 C -0.160 4.160 4 C -0.040 4.040 5 C -0.539 4.539 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.173 1.173 13 C -0.053 4.053 14 N -0.262 5.262 15 C -0.084 4.084 16 C -0.063 4.063 17 N -0.270 5.270 18 C -0.063 4.063 19 C -0.069 4.069 20 N -0.256 5.256 21 C -0.098 4.098 22 C -0.161 4.161 23 C -0.168 4.168 24 C -0.095 4.095 25 C -0.065 4.065 26 C -0.070 4.070 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.099 0.901 47 H 0.063 0.937 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.097 0.903 52 H 0.062 0.938 53 H 0.097 0.903 54 H 0.052 0.948 55 H 0.109 0.891 56 H 0.054 0.946 57 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.174 0.374 33.304 33.327 hybrid contribution 0.240 -1.364 -0.978 1.696 sum -0.934 -0.990 32.326 32.355 Atomic orbital electron populations 1.21897 0.95286 1.00397 1.00585 1.20302 0.95528 0.95795 0.92705 1.21450 0.99285 0.95666 0.99643 1.19583 0.95677 0.95295 0.93488 1.21422 1.30007 1.12032 0.90471 0.93783 1.25931 0.97637 1.00264 0.95782 1.70070 1.48369 1.42812 0.98412 0.85792 0.79713 0.79995 0.77909 1.19633 1.21511 1.17289 1.22089 0.99706 0.94075 0.89383 1.62054 1.02545 1.56690 1.04884 1.22572 0.91413 0.97140 0.97229 1.22099 0.95568 0.98250 0.90359 1.62149 1.02670 1.56507 1.05628 1.22021 0.99495 0.95407 0.89411 1.22155 0.99575 0.95426 0.89780 1.64795 1.06014 1.52015 1.02822 1.23297 0.89086 1.00026 0.97382 1.22498 0.98124 1.01499 0.93974 1.22408 0.95322 1.01733 0.97292 1.22918 0.98352 0.98429 0.89819 1.22153 0.90688 0.97196 0.96455 1.22205 0.95650 0.98295 0.90820 0.91578 0.94696 0.93465 0.94391 0.95514 0.92070 0.96903 0.97121 0.92943 0.91541 0.94583 0.94852 0.88901 0.89273 0.94716 0.90306 0.94761 0.90820 0.94338 0.90066 0.93670 0.89870 0.90876 0.90811 0.90256 0.93777 0.90333 0.94796 0.89143 0.94606 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 6.87 71.98 0.49 -4.10 16 2 C -0.04 -1.62 0.61 -52.18 -0.03 -1.66 16 3 C -0.10 -3.98 7.98 71.98 0.57 -3.41 16 4 C 0.00 -0.12 3.11 29.85 0.09 -0.03 16 5 C -0.50 -28.39 7.98 25.60 0.20 -28.19 16 6 H 0.04 2.74 6.02 -2.91 -0.02 2.72 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.94 45.05 27.47 68.60 1.88 46.93 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 C 0.08 2.34 4.24 86.30 0.37 2.71 16 14 N -0.54 -14.32 3.64 -895.70 -3.26 -17.58 16 15 C 0.04 1.08 5.09 86.31 0.44 1.52 16 16 C 0.07 1.36 5.61 86.31 0.48 1.84 16 17 N -0.54 -10.72 4.71 -895.75 -4.22 -14.94 16 18 C 0.06 1.10 4.62 86.30 0.40 1.50 16 19 C 0.06 0.94 4.96 86.30 0.43 1.37 16 20 N -0.53 -8.10 5.40 -883.02 -4.76 -12.87 16 21 C 0.03 0.38 5.10 86.65 0.44 0.82 16 22 C -0.12 -1.23 7.06 31.80 0.22 -1.00 16 23 C -0.13 -1.24 6.93 31.47 0.22 -1.02 16 24 C 0.03 0.41 6.70 86.45 0.58 0.99 16 25 C 0.06 1.26 5.41 86.31 0.47 1.73 16 26 C 0.06 1.32 5.49 86.31 0.47 1.80 16 27 H 0.07 2.13 6.10 -2.39 -0.01 2.11 16 28 H 0.03 1.52 6.32 -2.39 -0.02 1.50 16 29 H 0.05 1.60 7.82 -2.39 -0.02 1.58 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.18 6.48 -2.39 -0.02 1.17 16 32 H 0.06 2.13 7.59 -2.38 -0.02 2.11 16 33 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 34 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 35 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.07 2.03 7.67 -2.39 -0.02 2.01 16 37 H 0.04 1.11 7.76 -2.39 -0.02 1.09 16 38 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.09 2.38 4.23 -2.39 -0.01 2.37 16 40 H 0.09 1.59 8.07 -2.38 -0.02 1.57 16 41 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.25 6.68 -2.39 -0.02 1.23 16 43 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 44 H 0.07 1.20 6.49 -2.39 -0.02 1.19 16 45 H 0.04 0.65 7.81 -2.38 -0.02 0.63 16 46 H 0.08 1.04 7.66 -2.39 -0.02 1.02 16 47 H 0.04 0.59 8.00 -2.39 -0.02 0.57 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.04 0.56 7.57 -2.38 -0.02 0.54 16 53 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 55 H 0.09 1.54 6.34 -2.39 -0.02 1.53 16 56 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 57 H 0.08 1.78 7.98 -2.39 -0.02 1.76 16 Total: -1.00 -64.36 408.32 -3.00 -67.36 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.74 Total: 15.94 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 6.32 Total: -24.70 kcal Atomic # 7 Polarization: -93.59 SS G_CDS: -11.94 Total: -105.53 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -64.36 -3.00 -67.36 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119545467.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.041 kcal (2) G-P(sol) polarization free energy of solvation -64.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds