Wall clock time and date at job start Tue Mar 31 2020 13:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47009 * 2 1 4 4 C 1.46893 * 111.00162 * 169.99709 * 3 2 1 5 5 C 1.53244 * 109.34408 * 187.25286 * 4 3 2 6 6 N 1.47082 * 108.51778 * 306.17350 * 5 4 3 7 7 C 1.34779 * 120.87578 * 231.18509 * 6 5 4 8 8 O 1.21277 * 120.00308 * 354.98191 * 7 6 5 9 9 C 1.50699 * 119.99629 * 174.98313 * 7 6 5 10 10 H 1.08996 * 109.47617 * 46.28789 * 9 7 6 11 11 C 1.53003 * 109.47238 * 286.28893 * 9 7 6 12 12 N 1.46905 * 109.47303 * 166.28688 * 9 7 6 13 13 C 1.46853 * 110.99620 * 69.61755 * 12 9 7 14 14 C 1.53038 * 109.51930 * 185.83961 * 13 12 9 15 15 C 1.53115 * 109.28187 * 300.82285 * 14 13 12 16 16 C 1.53119 * 109.16045 * 57.65392 * 15 14 13 17 17 H 1.09003 * 109.50065 * 62.28917 * 16 15 14 18 18 C 1.50698 * 109.50793 * 182.40377 * 16 15 14 19 19 H 1.07995 * 120.00418 * 119.80239 * 18 16 15 20 20 C 1.37880 * 119.99619 * 299.80774 * 18 16 15 21 21 N 1.31512 * 120.00214 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99600 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47547 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46897 * 120.00052 * 22 20 18 25 25 H 1.48496 * 109.47363 * 239.99840 * 22 20 18 26 26 C 1.46839 * 111.00265 * 193.83102 * 12 9 7 27 27 C 1.47073 * 118.24007 * 51.45273 * 6 5 4 28 28 C 1.46898 * 110.99751 * 294.29880 * 3 2 1 29 29 H 1.08999 * 109.46895 * 60.00469 * 1 2 3 30 30 H 1.09005 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47383 * 300.00062 * 1 2 3 32 32 H 1.08994 * 109.47610 * 239.99467 * 2 1 3 33 33 H 1.09009 * 109.46877 * 119.99552 * 2 1 3 34 34 H 1.08997 * 109.49524 * 67.29211 * 4 3 2 35 35 H 1.09006 * 109.49292 * 307.21031 * 4 3 2 36 36 H 1.08999 * 109.63139 * 186.45768 * 5 4 3 37 37 H 1.09001 * 109.78676 * 65.97366 * 5 4 3 38 38 H 1.09001 * 109.47307 * 185.11182 * 11 9 7 39 39 H 1.09004 * 109.46905 * 305.10951 * 11 9 7 40 40 H 1.08995 * 109.47138 * 65.10793 * 11 9 7 41 41 H 1.09000 * 109.46451 * 305.86299 * 13 12 9 42 42 H 1.08996 * 109.45914 * 65.83956 * 13 12 9 43 43 H 1.08995 * 109.50459 * 60.76852 * 14 13 12 44 44 H 1.08997 * 109.49753 * 180.84098 * 14 13 12 45 45 H 1.08998 * 109.52257 * 177.55753 * 15 14 13 46 46 H 1.08998 * 109.52640 * 297.69044 * 15 14 13 47 47 H 0.96999 * 119.99626 * 179.97438 * 21 20 18 48 48 H 1.09012 * 109.46363 * 294.17751 * 26 12 9 49 49 H 1.09004 * 109.46144 * 54.14271 * 26 12 9 50 50 H 1.09003 * 109.63238 * 68.25428 * 27 6 5 51 51 H 1.09005 * 109.63029 * 188.83761 * 27 6 5 52 52 H 1.08997 * 109.49215 * 292.70323 * 28 3 2 53 53 H 1.08993 * 109.49321 * 52.78584 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2382 5 6 3.9081 2.8890 0.4110 6 7 3.4445 3.6580 -0.7539 7 6 4.2947 4.4378 -1.4508 8 8 5.4359 4.5842 -1.0675 9 6 3.8270 5.1278 -2.7063 10 1 2.8595 5.5958 -2.5249 11 6 3.6937 4.1013 -3.8330 12 7 4.8031 6.1554 -3.0929 13 6 6.0522 5.5437 -3.5645 14 6 7.0925 6.6368 -3.8194 15 6 6.5530 7.6136 -4.8678 16 6 5.2276 8.1999 -4.3736 17 1 5.3980 8.7603 -3.4543 18 6 4.6600 9.1177 -5.4254 19 1 3.6924 8.9103 -5.8579 20 6 5.3760 10.2223 -5.8356 21 7 6.5541 10.4751 -5.3086 22 14 4.6727 11.3596 -7.1399 23 1 3.3422 10.8584 -7.5685 24 1 4.5288 12.7270 -6.5788 25 1 5.5878 11.3980 -8.3088 26 6 4.2413 7.0615 -4.1026 27 6 2.0274 3.5581 -1.1345 28 6 1.6630 2.0694 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9909 0.9920 -0.6115 35 1 3.7065 0.8700 1.1418 36 1 4.9952 2.9386 0.4735 37 1 3.4700 3.3013 1.3199 38 1 3.4437 4.6126 -4.7626 39 1 4.6375 3.5693 -3.9534 40 1 2.9051 3.3908 -3.5857 41 1 6.4273 4.8544 -2.8080 42 1 5.8632 4.9995 -4.4898 43 1 7.2922 7.1726 -2.8915 44 1 8.0145 6.1837 -4.1836 45 1 7.2725 8.4179 -5.0207 46 1 6.3909 7.0862 -5.8078 47 1 7.0580 11.2520 -5.5975 48 1 4.0608 6.5100 -5.0254 49 1 3.3013 7.4747 -3.7368 50 1 1.4091 4.0314 -0.3717 51 1 1.8704 4.0503 -2.0943 52 1 2.2107 1.6213 -2.0790 53 1 0.5918 1.9710 -1.4257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:25 Heat of formation + Delta-G solvation = -19.044228 kcal Electronic energy + Delta-G solvation = -29283.642448 eV Core-core repulsion = 25576.255224 eV Total energy + Delta-G solvation = -3707.387224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55397 -38.84994 -37.53746 -35.14246 -34.26858 -32.38143 -31.54252 -30.86568 -29.86951 -28.94543 -27.05761 -24.89735 -24.75733 -24.09161 -22.70910 -21.76492 -21.48353 -20.73136 -18.82886 -18.27325 -17.16493 -16.53688 -15.95282 -15.70444 -15.58778 -15.39334 -15.05153 -14.77455 -14.44607 -14.27741 -14.02876 -13.91434 -13.54831 -13.14471 -12.82127 -12.68842 -12.49016 -12.41528 -12.36340 -12.15717 -11.94924 -11.78078 -11.70388 -11.57194 -11.54956 -11.32925 -11.18491 -11.03319 -10.92186 -10.61032 -10.58124 -9.98245 -9.74646 -9.60078 -9.34487 -8.95786 -8.85518 -8.62913 -8.53164 -8.24710 -7.56941 -5.93042 -3.99494 2.77613 2.85411 3.32017 3.40014 3.43031 3.48488 4.33800 4.46162 4.49886 4.58689 4.62755 4.77103 4.78389 4.93334 5.03015 5.06371 5.10133 5.13195 5.18821 5.24234 5.31342 5.36905 5.44030 5.50436 5.56837 5.59814 5.67551 5.72329 5.77440 5.83407 5.92737 5.95772 6.10896 6.23622 6.37810 6.43218 6.48776 6.61022 6.61989 6.64941 6.83558 6.91099 7.02985 7.30509 7.34453 7.49265 7.74904 7.79653 7.86435 8.14377 8.23781 8.35226 8.52538 9.04945 9.64467 11.12879 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.002673 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.569583 B =10472.783041 C =11110.161182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.043 3.957 5 C 0.119 3.881 6 N -0.621 5.621 7 C 0.527 3.473 8 O -0.517 6.517 9 C 0.064 3.936 10 H 0.099 0.901 11 C -0.180 4.180 12 N -0.516 5.516 13 C 0.057 3.943 14 C -0.115 4.115 15 C -0.110 4.110 16 C 0.056 3.944 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.887 5.887 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.068 3.932 27 C 0.110 3.890 28 C 0.037 3.963 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.019 0.981 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.028 0.972 47 H 0.259 0.741 48 H 0.022 0.978 49 H 0.058 0.942 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.039 0.961 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -21.477 9.619 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.263 5.263 4 C -0.086 4.086 5 C -0.004 4.004 6 N -0.357 5.357 7 C 0.315 3.685 8 O -0.391 6.391 9 C -0.048 4.048 10 H 0.116 0.884 11 C -0.239 4.239 12 N -0.240 5.240 13 C -0.070 4.070 14 C -0.153 4.153 15 C -0.148 4.148 16 C 0.037 3.963 17 H 0.053 0.947 18 C -0.552 4.552 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.058 4.058 27 C -0.014 4.014 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.111 0.889 52 H 0.057 0.943 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.026 -20.716 10.606 25.341 hybrid contribution -0.289 -0.342 -2.122 2.169 sum -10.315 -21.058 8.484 24.936 Atomic orbital electron populations 1.21813 0.94678 1.01618 1.02620 1.22077 0.96253 0.88586 1.00805 1.61975 1.13738 1.15750 1.34873 1.22494 0.87489 0.97337 1.01262 1.21596 1.01070 0.89359 0.88406 1.48178 1.09616 1.47148 1.30791 1.20755 0.85233 0.77863 0.84670 1.90637 1.18940 1.60658 1.68854 1.21607 0.97839 0.93208 0.92181 0.88365 1.22422 1.02358 0.99449 0.99656 1.61940 1.03195 1.16010 1.42874 1.22241 0.90376 0.97011 0.97420 1.21639 0.95949 0.96923 1.00770 1.21650 1.01023 0.97406 0.94743 1.18657 0.90406 0.90550 0.96708 0.94732 1.21167 1.03672 1.08509 1.21864 0.92830 1.24943 0.94934 0.97526 0.96505 1.69914 1.12175 1.27691 1.42772 0.86583 0.79072 0.80865 0.81712 1.19899 1.21076 1.21147 1.22373 0.98911 0.94081 0.90484 1.21986 0.81781 0.95743 1.01851 1.22644 1.01549 0.94432 0.90496 0.92563 0.92291 0.91702 0.94972 0.90694 0.94431 0.89633 0.88743 0.90965 0.90848 0.91878 0.92278 0.90234 0.96251 0.92094 0.93752 0.89242 0.95314 0.93133 0.96029 0.92384 0.90486 0.88917 0.94263 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.84 37.16 0.37 -0.45 16 2 C 0.05 0.32 5.68 -3.82 -0.02 0.30 16 3 N -0.54 -4.27 4.63 -234.02 -1.08 -5.35 16 4 C 0.04 0.36 5.62 -3.70 -0.02 0.34 16 5 C 0.12 1.24 6.58 -3.60 -0.02 1.22 16 6 N -0.62 -7.35 3.00 -172.17 -0.52 -7.87 16 7 C 0.53 8.14 6.84 -10.99 -0.08 8.07 16 8 O -0.52 -9.90 13.59 5.56 0.08 -9.83 16 9 C 0.06 0.98 1.85 -68.86 -0.13 0.85 16 10 H 0.10 1.36 6.77 -51.93 -0.35 1.00 16 11 C -0.18 -2.32 7.97 37.16 0.30 -2.02 16 12 N -0.52 -10.07 4.38 -228.07 -1.00 -11.07 16 13 C 0.06 1.11 4.27 -3.83 -0.02 1.10 16 14 C -0.11 -2.47 6.09 -26.65 -0.16 -2.63 16 15 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 16 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 17 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -25.73 11.36 55.43 0.63 -25.10 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.07 1.45 4.42 -3.84 -0.02 1.43 16 27 C 0.11 0.98 5.93 -3.36 -0.02 0.96 16 28 C 0.04 0.29 5.48 -3.46 -0.02 0.27 16 29 H 0.06 0.30 6.40 -51.93 -0.33 -0.03 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 33 H 0.07 0.44 7.97 -51.92 -0.41 0.02 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.59 7.99 -51.93 -0.41 0.17 16 36 H 0.09 1.12 7.10 -51.93 -0.37 0.75 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.99 6.79 -51.93 -0.35 0.64 16 39 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 40 H 0.06 0.59 6.52 -51.93 -0.34 0.26 16 41 H 0.08 1.58 5.68 -51.93 -0.30 1.28 16 42 H 0.02 0.37 6.69 -51.93 -0.35 0.02 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.45 6.92 -51.92 -0.36 0.09 16 49 H 0.06 1.19 7.98 -51.93 -0.41 0.78 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.77 4.67 -51.93 -0.24 0.53 16 52 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 53 H 0.09 0.56 6.16 -51.93 -0.32 0.24 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -31.37 385.70 -11.09 -42.46 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -9.41 Total: -0.43 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.57 Total: -4.98 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.97 Total: -49.38 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.37 -11.09 -42.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.414 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds