Wall clock time and date at job start Tue Mar 31 2020 13:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47009 * 2 1 4 4 C 1.46893 * 111.00162 * 169.99709 * 3 2 1 5 5 C 1.53244 * 109.34408 * 187.25286 * 4 3 2 6 6 N 1.47082 * 108.51778 * 306.17350 * 5 4 3 7 7 C 1.34779 * 120.87578 * 231.18509 * 6 5 4 8 8 O 1.21277 * 120.00308 * 354.98191 * 7 6 5 9 9 C 1.50699 * 119.99629 * 174.98313 * 7 6 5 10 10 H 1.08996 * 109.47617 * 46.28789 * 9 7 6 11 11 C 1.53003 * 109.47238 * 286.28893 * 9 7 6 12 12 N 1.46905 * 109.47303 * 166.28688 * 9 7 6 13 13 C 1.46853 * 110.99620 * 69.61755 * 12 9 7 14 14 C 1.53038 * 109.51930 * 185.83961 * 13 12 9 15 15 C 1.53115 * 109.28187 * 300.82285 * 14 13 12 16 16 C 1.53119 * 109.16045 * 57.65392 * 15 14 13 17 17 H 1.09003 * 109.50065 * 62.28917 * 16 15 14 18 18 C 1.50698 * 109.50793 * 182.40377 * 16 15 14 19 19 H 1.07995 * 120.00418 * 119.80239 * 18 16 15 20 20 C 1.37880 * 119.99619 * 299.80774 * 18 16 15 21 21 N 1.31512 * 120.00214 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99600 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47547 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46897 * 120.00052 * 22 20 18 25 25 H 1.48496 * 109.47363 * 239.99840 * 22 20 18 26 26 C 1.46839 * 111.00265 * 193.83102 * 12 9 7 27 27 C 1.47073 * 118.24007 * 51.45273 * 6 5 4 28 28 C 1.46898 * 110.99751 * 294.29880 * 3 2 1 29 29 H 1.08999 * 109.46895 * 60.00469 * 1 2 3 30 30 H 1.09005 * 109.46826 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47383 * 300.00062 * 1 2 3 32 32 H 1.08994 * 109.47610 * 239.99467 * 2 1 3 33 33 H 1.09009 * 109.46877 * 119.99552 * 2 1 3 34 34 H 1.08997 * 109.49524 * 67.29211 * 4 3 2 35 35 H 1.09006 * 109.49292 * 307.21031 * 4 3 2 36 36 H 1.08999 * 109.63139 * 186.45768 * 5 4 3 37 37 H 1.09001 * 109.78676 * 65.97366 * 5 4 3 38 38 H 1.09001 * 109.47307 * 185.11182 * 11 9 7 39 39 H 1.09004 * 109.46905 * 305.10951 * 11 9 7 40 40 H 1.08995 * 109.47138 * 65.10793 * 11 9 7 41 41 H 1.09000 * 109.46451 * 305.86299 * 13 12 9 42 42 H 1.08996 * 109.45914 * 65.83956 * 13 12 9 43 43 H 1.08995 * 109.50459 * 60.76852 * 14 13 12 44 44 H 1.08997 * 109.49753 * 180.84098 * 14 13 12 45 45 H 1.08998 * 109.52257 * 177.55753 * 15 14 13 46 46 H 1.08998 * 109.52640 * 297.69044 * 15 14 13 47 47 H 0.96999 * 119.99626 * 179.97438 * 21 20 18 48 48 H 1.09012 * 109.46363 * 294.17751 * 26 12 9 49 49 H 1.09004 * 109.46144 * 54.14271 * 26 12 9 50 50 H 1.09003 * 109.63238 * 68.25428 * 27 6 5 51 51 H 1.09005 * 109.63029 * 188.83761 * 27 6 5 52 52 H 1.08997 * 109.49215 * 292.70323 * 28 3 2 53 53 H 1.08993 * 109.49321 * 52.78584 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4312 0.2382 5 6 3.9081 2.8890 0.4110 6 7 3.4445 3.6580 -0.7539 7 6 4.2947 4.4378 -1.4508 8 8 5.4359 4.5842 -1.0675 9 6 3.8270 5.1278 -2.7063 10 1 2.8595 5.5958 -2.5249 11 6 3.6937 4.1013 -3.8330 12 7 4.8031 6.1554 -3.0929 13 6 6.0522 5.5437 -3.5645 14 6 7.0925 6.6368 -3.8194 15 6 6.5530 7.6136 -4.8678 16 6 5.2276 8.1999 -4.3736 17 1 5.3980 8.7603 -3.4543 18 6 4.6600 9.1177 -5.4254 19 1 3.6924 8.9103 -5.8579 20 6 5.3760 10.2223 -5.8356 21 7 6.5541 10.4751 -5.3086 22 14 4.6727 11.3596 -7.1399 23 1 3.3422 10.8584 -7.5685 24 1 4.5288 12.7270 -6.5788 25 1 5.5878 11.3980 -8.3088 26 6 4.2413 7.0615 -4.1026 27 6 2.0274 3.5581 -1.1345 28 6 1.6630 2.0694 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9909 0.9920 -0.6115 35 1 3.7065 0.8700 1.1418 36 1 4.9952 2.9386 0.4735 37 1 3.4700 3.3013 1.3199 38 1 3.4437 4.6126 -4.7626 39 1 4.6375 3.5693 -3.9534 40 1 2.9051 3.3908 -3.5857 41 1 6.4273 4.8544 -2.8080 42 1 5.8632 4.9995 -4.4898 43 1 7.2922 7.1726 -2.8915 44 1 8.0145 6.1837 -4.1836 45 1 7.2725 8.4179 -5.0207 46 1 6.3909 7.0862 -5.8078 47 1 7.0580 11.2520 -5.5975 48 1 4.0608 6.5100 -5.0254 49 1 3.3013 7.4747 -3.7368 50 1 1.4091 4.0314 -0.3717 51 1 1.8704 4.0503 -2.0943 52 1 2.2107 1.6213 -2.0790 53 1 0.5918 1.9710 -1.4257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:25 Heat of formation + Delta-G solvation = -39.957484 kcal Electronic energy + Delta-G solvation = -29284.549315 eV Core-core repulsion = 25576.255224 eV Total energy + Delta-G solvation = -3708.294091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65835 -39.96167 -38.81799 -36.08027 -35.92611 -34.08716 -32.49405 -31.70971 -31.48997 -30.35971 -27.85947 -26.90650 -25.96370 -24.85968 -23.83578 -23.32108 -22.60490 -21.73793 -20.19307 -19.70537 -18.42409 -18.24833 -17.22530 -16.64374 -16.46007 -16.39201 -16.23501 -15.88899 -15.77650 -15.47476 -15.28947 -14.97643 -14.83089 -14.61315 -14.26870 -14.00435 -13.94858 -13.46171 -13.37054 -13.23975 -13.02459 -12.87861 -12.81004 -12.74833 -12.72663 -12.46786 -12.34163 -12.31324 -12.24793 -12.03865 -11.75240 -11.64230 -11.59356 -11.43019 -11.05664 -10.66146 -10.51143 -10.28801 -9.80150 -9.26897 -9.07074 -8.05617 -6.20355 1.42256 1.43498 1.55080 1.61072 1.87536 2.44678 2.87929 3.09024 3.21519 3.47381 3.86234 3.93712 3.97415 4.03422 4.05598 4.22902 4.24729 4.25025 4.31391 4.39145 4.41741 4.47889 4.55218 4.60653 4.62870 4.65144 4.66948 4.72684 4.76927 4.81083 4.86226 4.88458 4.97786 5.01912 5.03929 5.12228 5.14604 5.17488 5.22146 5.38612 5.40777 5.51520 5.52444 5.65462 5.96136 6.02819 6.04969 6.12354 6.20926 6.23482 6.44060 6.48173 6.93289 7.20884 7.47772 8.99613 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.002673 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.569583 B =10472.783041 C =11110.161182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.544 5.544 4 C 0.052 3.948 5 C 0.117 3.883 6 N -0.613 5.613 7 C 0.524 3.476 8 O -0.564 6.564 9 C 0.063 3.937 10 H 0.116 0.884 11 C -0.170 4.170 12 N -0.537 5.537 13 C 0.069 3.931 14 C -0.109 4.109 15 C -0.101 4.101 16 C 0.052 3.948 17 H -0.010 1.010 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.957 3.043 23 H -0.262 1.262 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.084 3.916 27 C 0.104 3.896 28 C 0.041 3.959 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.027 0.973 47 H 0.259 0.741 48 H 0.029 0.971 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.035 0.965 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -23.443 9.176 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.077 4.077 5 C -0.006 4.006 6 N -0.348 5.348 7 C 0.312 3.688 8 O -0.442 6.442 9 C -0.049 4.049 10 H 0.134 0.866 11 C -0.229 4.229 12 N -0.261 5.261 13 C -0.059 4.059 14 C -0.147 4.147 15 C -0.139 4.139 16 C 0.033 3.967 17 H 0.008 0.992 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.189 4.189 21 N -0.559 5.559 22 Si 0.783 3.217 23 H -0.186 1.186 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.043 4.043 27 C -0.018 4.018 28 C -0.087 4.087 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.046 0.954 47 H 0.068 0.932 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.120 0.880 52 H 0.053 0.947 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.681 -22.724 10.176 27.942 hybrid contribution 0.486 0.238 -1.883 1.959 sum -12.196 -22.486 8.293 26.891 Atomic orbital electron populations 1.21783 0.93809 1.02289 1.02447 1.22129 0.96894 0.87602 1.01077 1.61999 1.13078 1.16835 1.35036 1.22392 0.87941 0.95614 1.01740 1.21673 1.00131 0.90726 0.88082 1.48225 1.10463 1.45777 1.30291 1.20789 0.84979 0.78123 0.84878 1.90619 1.20933 1.62613 1.70063 1.21708 0.97191 0.92988 0.92978 0.86592 1.22333 1.03054 0.99157 0.98321 1.61767 1.04219 1.17883 1.42227 1.22073 0.89948 0.95909 0.97920 1.21556 0.97599 0.96873 0.98689 1.21450 0.99959 0.96944 0.95548 1.18587 0.92093 0.91718 0.94285 0.99203 1.21533 1.03892 1.09160 1.22230 0.92347 1.25793 0.95225 0.99210 0.98671 1.70077 1.13446 1.28197 1.44141 0.85516 0.78746 0.78566 0.78864 1.18639 1.20907 1.20823 1.22028 0.97634 0.93156 0.91446 1.22239 0.79822 0.97138 1.02593 1.22645 1.02671 0.93158 0.90262 0.92338 0.91279 0.92188 0.95042 0.90117 0.95322 0.87980 0.90602 0.90411 0.91117 0.92867 0.88989 0.90209 0.95042 0.94315 0.91844 0.92594 0.95370 0.93194 0.95238 0.91777 0.89661 0.87990 0.94651 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.84 71.98 0.71 -0.46 16 2 C 0.05 0.51 5.68 86.30 0.49 1.00 16 3 N -0.54 -7.17 4.63 -894.32 -4.14 -11.31 16 4 C 0.05 0.77 5.62 86.39 0.49 1.26 16 5 C 0.12 2.33 6.58 86.35 0.57 2.89 16 6 N -0.61 -13.58 3.00 -817.03 -2.45 -16.04 16 7 C 0.52 15.77 6.84 87.66 0.60 16.37 16 8 O -0.56 -21.89 13.59 -3.02 -0.04 -21.93 16 9 C 0.06 1.82 1.85 44.17 0.08 1.91 16 10 H 0.12 2.92 6.77 -2.39 -0.02 2.90 16 11 C -0.17 -3.94 7.97 71.98 0.57 -3.37 16 12 N -0.54 -20.80 4.38 -875.49 -3.84 -24.64 16 13 C 0.07 2.69 4.27 86.32 0.37 3.06 16 14 C -0.11 -4.81 6.09 30.65 0.19 -4.62 16 15 C -0.10 -5.11 5.03 30.67 0.15 -4.96 16 16 C 0.05 2.74 2.26 -11.49 -0.03 2.71 16 17 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 18 C -0.53 -29.50 8.56 25.60 0.22 -29.29 16 19 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 20 C 0.01 0.53 5.30 84.66 0.45 0.98 16 21 N -0.92 -54.97 11.36 21.45 0.24 -54.73 16 22 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.08 3.56 4.42 86.33 0.38 3.94 16 27 C 0.10 1.57 5.93 86.51 0.51 2.08 16 28 C 0.04 0.50 5.48 86.54 0.47 0.98 16 29 H 0.06 0.44 6.40 -2.39 -0.02 0.43 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.03 0.33 8.12 -2.39 -0.02 0.31 16 33 H 0.08 0.73 7.97 -2.38 -0.02 0.71 16 34 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 1.19 7.99 -2.38 -0.02 1.17 16 36 H 0.08 1.82 7.10 -2.39 -0.02 1.80 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.71 6.79 -2.39 -0.02 1.70 16 39 H 0.05 1.36 6.77 -2.38 -0.02 1.34 16 40 H 0.09 1.51 6.52 -2.39 -0.02 1.50 16 41 H 0.08 3.17 5.68 -2.39 -0.01 3.16 16 42 H 0.03 1.15 6.69 -2.39 -0.02 1.13 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.06 3.20 6.17 -2.39 -0.01 3.18 16 46 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.03 1.20 6.92 -2.38 -0.02 1.18 16 49 H 0.06 2.59 7.98 -2.38 -0.02 2.57 16 50 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.10 1.35 4.67 -2.38 -0.01 1.34 16 52 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 53 H 0.11 0.94 6.16 -2.39 -0.01 0.93 16 Total: -1.00 -70.06 385.70 -1.10 -71.16 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.87 Total: 16.91 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 6.23 Total: -5.52 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -10.19 Total: -106.71 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.06 -1.10 -71.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.205 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds