Wall clock time and date at job start Tue Mar 31 2020 13:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47633 * 110.99813 * 2 1 4 4 C 1.50818 * 108.04872 * 150.34482 * 3 2 1 5 5 C 1.53818 * 111.62415 * 95.05184 * 4 3 2 6 6 C 1.54178 * 111.97125 * 319.04529 * 5 4 3 7 7 C 1.50751 * 112.60583 * 318.48018 * 6 5 4 8 8 H 1.09003 * 109.54980 * 333.15534 * 7 6 5 9 9 C 1.52998 * 109.54484 * 212.88010 * 7 6 5 10 10 N 1.46498 * 109.47301 * 175.45834 * 9 7 6 11 11 C 1.34777 * 120.00384 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99789 * 355.02549 * 11 10 9 13 13 N 1.34779 * 120.00083 * 175.01525 * 11 10 9 14 14 C 1.46920 * 120.63059 * 5.23522 * 13 11 10 15 15 C 1.53186 * 108.77643 * 126.36498 * 14 13 11 16 16 C 1.53042 * 109.31327 * 54.63285 * 15 14 13 17 17 C 1.53038 * 109.53669 * 298.63506 * 16 15 14 18 18 H 1.09002 * 109.49676 * 301.37935 * 17 16 15 19 19 C 1.50704 * 109.49492 * 181.31762 * 17 16 15 20 20 H 1.08003 * 120.00032 * 359.97438 * 19 17 16 21 21 C 1.37881 * 119.99747 * 180.02562 * 19 17 16 22 22 N 1.31514 * 119.99891 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99738 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46846 * 60.00251 * 23 21 19 25 25 H 1.48499 * 109.46767 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47415 * 300.00016 * 23 21 19 27 27 C 1.46929 * 120.62681 * 184.94745 * 13 11 10 28 28 C 1.39773 * 111.00331 * 231.09891 * 2 1 3 29 29 H 1.09000 * 109.46644 * 63.95428 * 1 2 3 30 30 H 1.08998 * 109.47197 * 183.95581 * 1 2 3 31 31 H 1.09006 * 109.46940 * 303.95575 * 1 2 3 32 32 H 1.09003 * 109.74566 * 269.97685 * 3 2 1 33 33 H 1.08994 * 109.74972 * 30.70713 * 3 2 1 34 34 H 1.09004 * 109.05421 * 215.60688 * 4 3 2 35 35 H 1.09000 * 109.04973 * 334.50377 * 4 3 2 36 36 H 1.08996 * 108.98779 * 198.39980 * 5 4 3 37 37 H 1.09003 * 108.98031 * 79.68550 * 5 4 3 38 38 H 1.08999 * 108.84914 * 197.67792 * 6 5 4 39 39 H 1.08997 * 108.85201 * 79.29139 * 6 5 4 40 40 H 1.09002 * 109.47084 * 295.46004 * 9 7 6 41 41 H 1.09002 * 109.47311 * 55.46001 * 9 7 6 42 42 H 0.97002 * 119.99985 * 0.02562 * 10 9 7 43 43 H 1.09004 * 109.58714 * 246.15568 * 14 13 11 44 44 H 1.09001 * 109.58981 * 6.57430 * 14 13 11 45 45 H 1.09005 * 109.50051 * 174.58349 * 15 14 13 46 46 H 1.09005 * 109.49907 * 294.64756 * 15 14 13 47 47 H 1.09002 * 109.45663 * 58.65799 * 16 15 14 48 48 H 1.09002 * 109.45873 * 178.62569 * 16 15 14 49 49 H 0.97005 * 119.99737 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.58636 * 353.42856 * 27 13 11 51 51 H 1.09004 * 109.58057 * 113.84847 * 27 13 11 52 52 H 1.08998 * 109.02121 * 309.72424 * 28 2 1 53 53 H 1.09004 * 109.01925 * 68.61634 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3783 0.0000 4 6 3.3289 1.3680 0.7095 5 6 4.4982 1.2355 -0.2809 6 6 4.1919 0.2235 -1.4031 7 6 3.4972 -1.0137 -0.8939 8 1 3.7619 -1.1768 0.1509 9 6 3.9275 -2.2222 -1.7276 10 7 3.3369 -3.4390 -1.1649 11 6 3.5793 -4.6338 -1.7394 12 8 4.2127 -4.6927 -2.7756 13 7 3.1198 -5.7633 -1.1653 14 6 2.2574 -5.7019 0.0225 15 6 0.9823 -6.5053 -0.2518 16 6 1.3609 -7.9247 -0.6810 17 6 2.1826 -7.8673 -1.9708 18 1 1.6020 -7.3740 -2.7504 19 6 2.5274 -9.2671 -2.4102 20 1 2.1943 -10.1134 -1.8277 21 6 3.2689 -9.4672 -3.5552 22 7 3.6757 -8.4365 -4.2637 23 14 3.6969 -11.2022 -4.0994 24 1 2.4474 -11.9669 -4.3429 25 1 4.4941 -11.1458 -5.3511 26 1 4.4889 -11.8729 -3.0374 27 6 3.4667 -7.0792 -1.7193 28 6 1.9700 -0.8194 -1.0155 29 1 -0.3632 0.4512 -0.9233 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 2.1304 1.7219 -1.0259 33 1 1.3066 2.0382 0.5238 34 1 3.4406 2.2963 1.2698 35 1 3.3548 0.5290 1.4048 36 1 5.3857 0.9072 0.2600 37 1 4.6972 2.2100 -0.7270 38 1 5.1280 -0.0688 -1.8789 39 1 3.5561 0.7039 -2.1467 40 1 3.5868 -2.0946 -2.7551 41 1 5.0142 -2.3054 -1.7129 42 1 2.7707 -3.3847 -0.3791 43 1 2.7818 -6.1292 0.8773 44 1 1.9975 -4.6643 0.2322 45 1 0.3774 -6.5483 0.6540 46 1 0.4130 -6.0239 -1.0470 47 1 1.9509 -8.3964 0.1048 48 1 0.4549 -8.5058 -0.8533 49 1 4.1971 -8.5774 -5.0695 50 1 4.0045 -6.9500 -2.6585 51 1 4.0917 -7.6211 -1.0095 52 1 1.4825 -1.7927 -0.9596 53 1 1.7465 -0.3655 -1.9810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599156924.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:21 Heat of formation + Delta-G solvation = -51.841126 kcal Electronic energy + Delta-G solvation = -29026.494958 eV Core-core repulsion = 25317.685553 eV Total energy + Delta-G solvation = -3708.809404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40577 -40.46502 -38.50662 -36.50038 -35.45719 -35.06497 -33.59784 -32.72551 -31.45852 -28.80805 -27.89586 -26.93714 -26.16305 -25.38838 -23.76561 -23.37652 -21.73243 -21.57478 -20.65571 -19.92051 -19.03990 -18.22685 -17.28680 -16.90990 -16.78859 -16.53067 -16.22770 -15.91126 -15.70025 -15.22209 -15.16102 -15.13451 -14.61640 -14.58728 -14.30376 -14.20161 -13.88099 -13.58579 -13.48996 -13.41160 -13.14028 -12.86554 -12.84030 -12.68577 -12.41910 -12.26777 -12.23264 -12.00122 -11.85468 -11.70850 -11.61683 -11.56629 -11.26727 -11.23953 -11.12645 -10.93055 -10.80836 -10.49713 -10.13204 -9.23226 -9.15424 -8.07985 -6.26057 1.41387 1.43283 1.51628 1.82398 2.26559 2.43203 2.98013 3.07324 3.21326 3.67781 3.77692 3.88031 4.05404 4.14445 4.16669 4.22131 4.29531 4.33705 4.47594 4.51399 4.55252 4.61631 4.62834 4.67799 4.72750 4.75602 4.78806 4.82942 4.86836 4.90970 4.96061 5.03928 5.06764 5.11918 5.18227 5.27903 5.28618 5.29103 5.31231 5.34751 5.45043 5.55751 5.57262 5.60574 5.67609 5.91482 6.00257 6.19058 6.20800 6.37986 6.44035 6.87425 7.16115 7.43915 7.71367 8.94746 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.022313 B = 0.002757 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.590970 B =10154.720931 C =10920.080280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.563 5.563 3 C 0.062 3.938 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.078 4.078 8 H 0.095 0.905 9 C 0.148 3.852 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.641 6.641 13 N -0.627 5.627 14 C 0.111 3.889 15 C -0.125 4.125 16 C -0.104 4.104 17 C 0.038 3.962 18 H -0.017 1.017 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.915 5.915 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.143 3.857 28 C 0.083 3.917 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.407 0.593 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.034 0.966 52 H 0.065 0.935 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 21.902 14.542 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.287 5.287 3 C -0.064 4.064 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.097 4.097 8 H 0.113 0.887 9 C 0.024 3.976 10 N -0.391 5.391 11 C 0.393 3.607 12 O -0.523 6.523 13 N -0.363 5.363 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.142 4.142 17 C 0.019 3.981 18 H 0.001 0.999 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.553 5.553 23 Si 0.783 3.217 24 H -0.193 1.193 25 H -0.216 1.216 26 H -0.191 1.191 27 C 0.020 3.980 28 C -0.047 4.047 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.246 0.754 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.052 0.948 52 H 0.084 0.916 53 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.023 21.724 14.054 26.185 hybrid contribution -0.068 -0.827 -1.591 1.795 sum -4.092 20.897 12.463 24.673 Atomic orbital electron populations 1.22400 0.85988 1.02652 1.00809 1.58867 1.08121 1.12877 1.48798 1.21904 0.97020 0.87790 0.99683 1.21397 0.93033 1.02759 0.98176 1.21879 0.98480 0.98561 0.96084 1.21391 1.00510 0.94643 0.98775 1.21132 0.94883 0.93060 1.00664 0.88710 1.21247 0.97252 0.82345 0.96804 1.45132 1.55531 1.04405 1.34080 1.16232 0.80052 0.81585 0.82823 1.90885 1.48764 1.86635 1.26027 1.47672 1.52276 1.05121 1.31252 1.21841 0.90971 1.01393 0.86908 1.21904 0.96908 0.95418 1.02097 1.21502 0.99104 0.96415 0.97185 1.18830 0.92270 0.93989 0.93009 0.99929 1.21501 1.34099 0.93006 1.08923 0.91878 1.25930 0.95796 1.00722 0.96679 1.70114 1.37257 1.31552 1.16408 0.85610 0.78420 0.80132 0.77503 1.19295 1.21574 1.19085 1.21476 0.99062 0.79606 0.97848 1.20909 0.94730 0.97164 0.91915 0.96034 0.91441 0.89973 0.94399 0.89783 0.90530 0.91317 0.91736 0.91336 0.91826 0.92424 0.93780 0.92564 0.75386 0.90133 0.88483 0.87675 0.93417 0.92293 0.93024 0.93226 0.90722 0.94753 0.91629 0.97084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.44 127.69 1.21 1.59 16 2 N -0.56 -8.66 4.19 -939.57 -3.94 -12.60 16 3 C 0.06 0.79 5.37 85.45 0.46 1.25 16 4 C -0.12 -1.35 5.41 30.16 0.16 -1.18 16 5 C -0.11 -1.40 5.91 31.27 0.18 -1.22 16 6 C -0.12 -1.87 4.87 30.26 0.15 -1.72 16 7 C -0.08 -1.45 1.95 -11.04 -0.02 -1.47 16 8 H 0.09 1.69 7.11 -2.39 -0.02 1.68 16 9 C 0.15 3.98 4.90 86.38 0.42 4.40 16 10 N -0.73 -22.04 5.00 -478.54 -2.39 -24.44 16 11 C 0.69 29.72 8.30 179.05 1.49 31.21 16 12 O -0.64 -35.09 15.77 -3.99 -0.06 -35.15 16 13 N -0.63 -26.06 2.98 -837.77 -2.50 -28.55 16 14 C 0.11 3.20 6.39 86.36 0.55 3.76 16 15 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 16 C -0.10 -4.08 5.11 30.62 0.16 -3.92 16 17 C 0.04 1.99 2.24 -11.61 -0.03 1.96 16 18 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 19 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 20 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 21 C 0.01 0.47 5.31 84.66 0.45 0.92 16 22 N -0.91 -57.26 11.39 21.45 0.24 -57.02 16 23 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.14 7.39 5.39 86.22 0.46 7.86 16 28 C 0.08 1.53 4.26 88.07 0.37 1.91 16 29 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.91 7.94 -2.39 -0.02 0.89 16 31 H 0.08 0.85 7.97 -2.38 -0.02 0.83 16 32 H 0.04 0.53 6.66 -2.39 -0.02 0.51 16 33 H 0.08 0.85 7.71 -2.39 -0.02 0.83 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.94 7.26 -2.39 -0.02 0.93 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 1.09 7.61 -2.39 -0.02 1.07 16 39 H 0.06 0.96 6.57 -2.39 -0.02 0.95 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.62 7.98 -2.39 -0.02 1.60 16 42 H 0.41 9.53 5.25 -92.71 -0.49 9.05 16 43 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 44 H 0.10 2.08 5.65 -2.39 -0.01 2.07 16 45 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 50 H 0.07 4.65 5.10 -2.39 -0.01 4.64 16 51 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 52 H 0.07 1.32 6.66 -2.39 -0.02 1.31 16 53 H 0.01 0.23 7.54 -2.39 -0.02 0.21 16 Total: -1.00 -75.39 390.42 0.19 -75.20 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.39 Total: 23.59 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.42 Total: 11.86 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -8.58 Total: -122.61 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -75.39 0.19 -75.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599156924.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.355 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds