Wall clock time and date at job start Tue Mar 31 2020 13:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46842 * 111.00012 * 2 1 4 4 C 1.53045 * 109.52261 * 185.84090 * 3 2 1 5 5 C 1.53123 * 109.27650 * 300.81705 * 4 3 2 6 6 C 1.53122 * 109.15574 * 57.65725 * 5 4 3 7 7 C 1.46852 * 111.00047 * 124.20776 * 2 1 3 8 8 H 1.08995 * 109.45340 * 294.17191 * 7 2 1 9 9 C 1.50706 * 109.45962 * 54.14281 * 7 2 1 10 10 O 1.21285 * 119.99957 * 27.05760 * 9 7 2 11 11 N 1.34778 * 119.99699 * 207.05167 * 9 7 2 12 12 C 1.46503 * 119.99566 * 185.18376 * 11 9 7 13 13 C 1.52999 * 109.47008 * 179.20268 * 12 11 9 14 14 H 1.09006 * 109.44736 * 62.00655 * 13 12 11 15 15 C 1.54930 * 109.47362 * 182.09331 * 13 12 11 16 16 C 1.47093 * 110.31335 * 191.44972 * 15 13 12 17 17 C 1.52572 * 114.20403 * 296.96987 * 16 15 13 18 18 C 1.50885 * 109.35856 * 85.09090 * 17 16 15 19 19 C 1.53948 * 110.09338 * 268.11401 * 18 17 16 20 20 N 1.44577 * 109.45380 * 302.06283 * 13 12 11 21 21 C 1.36939 * 118.64067 * 329.25432 * 20 13 12 22 22 H 1.07993 * 120.00149 * 326.07967 * 21 20 13 23 23 C 1.38816 * 119.99633 * 146.07416 * 21 20 13 24 24 N 1.31618 * 119.99561 * 159.01514 * 23 21 20 25 25 Si 1.86792 * 120.00315 * 339.01296 * 23 21 20 26 26 H 1.48500 * 109.47285 * 90.35366 * 25 23 21 27 27 H 1.48501 * 109.47417 * 210.35144 * 25 23 21 28 28 H 1.48498 * 109.47290 * 330.35563 * 25 23 21 29 29 H 1.09004 * 109.47209 * 295.79389 * 1 2 3 30 30 H 1.09000 * 109.47226 * 55.78578 * 1 2 3 31 31 H 1.08996 * 109.47349 * 175.79268 * 1 2 3 32 32 H 1.09001 * 109.46690 * 65.82851 * 3 2 1 33 33 H 1.09000 * 109.45470 * 305.84845 * 3 2 1 34 34 H 1.09000 * 109.50361 * 180.87858 * 4 3 2 35 35 H 1.09002 * 109.50408 * 60.76041 * 4 3 2 36 36 H 1.09003 * 109.52408 * 297.75141 * 5 4 3 37 37 H 1.09000 * 109.57213 * 177.58740 * 5 4 3 38 38 H 1.09004 * 109.49961 * 182.40456 * 6 5 4 39 39 H 1.08990 * 109.50687 * 62.28870 * 6 5 4 40 40 H 0.96991 * 120.00008 * 5.19046 * 11 9 7 41 41 H 1.09006 * 109.46953 * 59.21070 * 12 11 9 42 42 H 1.08998 * 109.47374 * 299.21112 * 12 11 9 43 43 H 1.09000 * 109.45278 * 71.11593 * 15 13 12 44 44 H 1.09001 * 109.21382 * 311.63062 * 15 13 12 45 45 H 1.08998 * 108.50961 * 175.79926 * 16 15 13 46 46 H 1.08997 * 108.51081 * 58.14363 * 16 15 13 47 47 H 1.09006 * 109.48694 * 205.05337 * 17 16 15 48 48 H 1.08991 * 109.49307 * 325.12241 * 17 16 15 49 49 H 1.08994 * 109.36789 * 28.30400 * 18 17 16 50 50 H 1.08998 * 109.36311 * 147.92350 * 18 17 16 51 51 H 1.09004 * 108.94693 * 161.25457 * 19 18 17 52 52 H 1.09002 * 108.94295 * 279.96600 * 19 18 17 53 53 H 0.97006 * 119.99980 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8715 1.0208 7 6 1.9952 -0.7708 1.1338 8 1 1.7325 -0.2707 2.0659 9 6 1.3981 -2.1544 1.1207 10 8 1.0329 -2.6473 0.0744 11 7 1.2701 -2.8440 2.2716 12 6 0.7961 -4.2300 2.2461 13 6 0.7612 -4.7834 3.6721 14 1 0.0598 -4.2015 4.2701 15 6 0.3105 -6.2653 3.6401 16 6 0.0072 -6.7362 5.0002 17 6 1.2043 -6.7289 5.9462 18 6 1.3517 -5.3566 6.5558 19 6 2.3020 -4.4978 5.7017 20 7 2.0809 -4.6939 4.2556 21 6 3.1708 -4.7949 3.4327 22 1 3.1351 -5.4379 2.5658 23 6 4.3214 -4.0706 3.7127 24 7 5.4764 -4.4489 3.2075 25 14 4.2305 -2.5590 4.8064 26 1 4.4450 -2.9577 6.2207 27 1 5.2805 -1.5905 4.4005 28 1 2.8939 -1.9271 4.6675 29 1 -0.3634 0.4472 0.9253 30 1 -0.3634 0.5778 -0.8498 31 1 -0.3634 -1.0248 -0.0754 32 1 1.7325 1.8608 0.9376 33 1 1.5634 1.9255 -0.8331 34 1 3.9099 2.3511 -0.1311 35 1 3.7814 0.8567 -1.0907 36 1 3.8887 1.0354 1.9560 37 1 5.1999 0.4713 0.8916 38 1 3.9098 -1.4303 1.8708 39 1 3.7813 -1.3837 0.0954 40 1 1.4917 -2.4227 3.1166 41 1 1.4705 -4.8336 1.6386 42 1 -0.2061 -4.2635 1.8186 43 1 1.1060 -6.8776 3.2153 44 1 -0.5812 -6.3557 3.0199 45 1 -0.3771 -7.7542 4.9363 46 1 -0.7706 -6.0995 5.4215 47 1 1.0477 -7.4631 6.7366 48 1 2.1082 -6.9792 5.3909 49 1 0.3748 -4.8757 6.6039 50 1 1.7565 -5.4504 7.5635 51 1 2.1441 -3.4470 5.9447 52 1 3.3314 -4.7650 5.9405 53 1 6.2805 -3.9430 3.4035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968919731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:47 Heat of formation + Delta-G solvation = -37.260719 kcal Electronic energy + Delta-G solvation = -30570.386920 eV Core-core repulsion = 26862.209769 eV Total energy + Delta-G solvation = -3708.177151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39815 -40.07098 -38.81936 -36.08133 -35.23893 -34.51181 -33.48550 -33.17644 -32.08466 -28.97136 -27.86476 -27.22486 -25.52888 -24.89371 -23.96887 -23.39484 -21.67645 -21.14693 -21.02189 -20.60918 -18.58903 -17.93931 -17.34882 -17.07618 -16.89190 -16.32612 -16.02897 -15.84923 -15.66283 -15.49254 -15.38107 -15.12966 -14.73051 -14.58680 -14.36275 -14.08960 -13.94735 -13.73587 -13.63458 -13.42353 -13.23650 -13.10933 -12.81261 -12.71985 -12.63394 -12.42774 -12.35907 -11.88969 -11.86041 -11.73047 -11.71137 -11.43793 -11.39065 -11.34832 -11.31684 -11.01958 -10.62910 -10.54536 -9.87303 -9.31968 -8.70571 -8.09713 -5.46285 1.32607 1.34980 1.47532 1.64406 2.21968 2.45744 2.94537 3.07655 3.36334 3.65586 3.78333 3.86271 3.93579 4.00294 4.01463 4.12091 4.18085 4.20501 4.31427 4.33475 4.43142 4.48781 4.49306 4.53064 4.54600 4.66206 4.74516 4.77022 4.81940 4.90533 4.91612 4.97599 5.00451 5.02707 5.10503 5.10734 5.12680 5.14857 5.17964 5.36135 5.37153 5.40493 5.50429 5.54843 5.62254 5.71872 5.89738 5.99525 6.12420 6.26777 6.65657 7.06879 7.32324 7.74244 8.07089 9.11003 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.004980 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.139582 B = 5621.086326 C = 6732.568536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.056 3.944 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.081 3.919 8 H 0.065 0.935 9 C 0.513 3.487 10 O -0.570 6.570 11 N -0.699 5.699 12 C 0.135 3.865 13 C 0.173 3.827 14 H 0.074 0.926 15 C -0.127 4.127 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.124 4.124 19 C 0.129 3.871 20 N -0.600 5.600 21 C -0.227 4.227 22 H 0.035 0.965 23 C -0.015 4.015 24 N -0.954 5.954 25 Si 0.928 3.072 26 H -0.287 1.287 27 H -0.315 1.315 28 H -0.249 1.249 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.400 0.600 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.021 0.979 52 H 0.036 0.964 53 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 9.846 2.734 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.143 4.143 7 C -0.031 4.031 8 H 0.082 0.918 9 C 0.299 3.701 10 O -0.449 6.449 11 N -0.349 5.349 12 C 0.011 3.989 13 C 0.066 3.934 14 H 0.092 0.908 15 C -0.167 4.167 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.163 4.163 19 C 0.004 3.996 20 N -0.323 5.323 21 C -0.357 4.357 22 H 0.053 0.947 23 C -0.210 4.210 24 N -0.600 5.600 25 Si 0.758 3.242 26 H -0.214 1.214 27 H -0.244 1.244 28 H -0.174 1.174 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.235 0.765 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.038 0.962 52 H 0.055 0.945 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.705 9.286 1.577 15.024 hybrid contribution 0.896 0.615 1.354 1.736 sum -10.809 9.902 2.931 14.949 Atomic orbital electron populations 1.22456 0.86189 1.02541 1.01320 1.61632 1.08788 1.14521 1.41501 1.22267 0.95817 0.87214 1.01835 1.21614 0.94272 1.01071 0.98021 1.21602 1.00479 0.93453 0.99970 1.21446 0.92101 0.99341 1.01456 1.21472 0.96022 0.91417 0.94168 0.91759 1.20694 0.77848 0.88116 0.83450 1.90603 1.50749 1.71530 1.32032 1.45834 1.66157 1.14051 1.08809 1.21443 0.97745 0.81477 0.98277 1.20794 0.86508 0.94996 0.91090 0.90787 1.21250 1.00371 0.96885 0.98207 1.20290 0.97597 1.01301 0.94658 1.20949 0.98574 0.96667 0.98410 1.21806 0.99972 0.96070 0.98423 1.21627 0.98154 0.96570 0.83218 1.44024 1.01539 1.85077 1.01672 1.18392 0.91329 1.19133 1.06829 0.94722 1.25845 0.95118 1.00447 0.99588 1.70000 0.98847 1.40944 1.50207 0.86201 0.77212 0.82125 0.78651 1.21376 1.24385 1.17374 0.94906 0.89310 0.92523 0.93817 0.88372 0.88423 0.91862 0.91188 0.91025 0.93482 0.92693 0.76472 0.94564 0.91062 0.94622 0.90625 0.91980 0.91117 0.91263 0.94311 0.90554 0.90949 0.96154 0.94516 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.12 127.69 1.16 1.76 16 2 N -0.54 -15.96 4.51 -901.59 -4.06 -20.02 16 3 C 0.06 1.22 5.46 86.33 0.47 1.69 16 4 C -0.11 -2.45 6.09 30.65 0.19 -2.26 16 5 C -0.12 -3.18 6.00 30.68 0.18 -3.00 16 6 C -0.10 -3.78 5.36 30.65 0.16 -3.61 16 7 C 0.08 2.73 2.24 44.19 0.10 2.83 16 8 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 9 C 0.51 20.38 6.01 87.66 0.53 20.91 16 10 O -0.57 -26.01 15.04 -3.05 -0.05 -26.06 16 11 N -0.70 -26.81 4.86 -463.04 -2.25 -29.06 16 12 C 0.14 5.11 4.53 86.38 0.39 5.50 16 13 C 0.17 5.93 2.15 46.01 0.10 6.03 16 14 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 15 C -0.13 -3.88 5.06 29.42 0.15 -3.73 16 16 C -0.10 -2.61 5.16 28.62 0.15 -2.46 16 17 C -0.11 -3.14 5.51 29.76 0.16 -2.98 16 18 C -0.12 -3.55 5.71 30.23 0.17 -3.38 16 19 C 0.13 4.89 4.07 86.49 0.35 5.24 16 20 N -0.60 -24.72 1.54 -674.13 -1.04 -25.75 16 21 C -0.23 -11.82 7.98 84.03 0.67 -11.15 16 22 H 0.04 2.12 7.13 -2.91 -0.02 2.10 16 23 C -0.01 -0.82 5.10 84.86 0.43 -0.38 16 24 N -0.95 -58.42 13.97 21.65 0.30 -58.12 16 25 Si 0.93 43.09 23.38 68.60 1.60 44.69 16 26 H -0.29 -13.07 6.85 99.48 0.68 -12.39 16 27 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.25 -10.21 6.03 99.48 0.60 -9.61 16 29 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 31 H 0.06 1.82 5.90 -2.39 -0.01 1.80 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.96 7.47 -2.39 -0.02 1.94 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.40 15.01 7.15 -92.72 -0.66 14.34 16 41 H 0.04 1.66 6.81 -2.38 -0.02 1.65 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.97 8.11 -2.39 -0.02 1.95 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.55 7.35 -2.39 -0.02 1.53 16 47 H 0.07 1.69 8.14 -2.38 -0.02 1.68 16 48 H 0.04 1.44 7.48 -2.39 -0.02 1.42 16 49 H 0.08 1.86 7.32 -2.39 -0.02 1.84 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.02 0.76 6.07 -2.39 -0.01 0.75 16 52 H 0.04 1.62 6.11 -2.39 -0.01 1.60 16 53 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -67.74 384.11 -0.04 -67.78 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.07 Total: 35.56 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.38 Total: 10.99 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -7.05 Total: -132.96 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.60 Total: 44.69 kcal Total: -67.74 -0.04 -67.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968919731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.516 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds