Wall clock time and date at job start Tue Mar 31 2020 13:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46972 * 2 1 4 4 C 1.34776 * 119.99552 * 85.98164 * 3 2 1 5 5 O 1.21290 * 119.99489 * 183.13152 * 4 3 2 6 6 C 1.50700 * 120.00573 * 3.13669 * 4 3 2 7 7 H 1.09000 * 110.64045 * 338.40233 * 6 4 3 8 8 C 1.54594 * 110.72491 * 215.24660 * 6 4 3 9 9 C 1.53992 * 105.14100 * 219.68322 * 8 6 4 10 10 N 1.47909 * 107.05577 * 358.77545 * 9 8 6 11 11 C 1.46901 * 110.99481 * 145.84229 * 10 9 8 12 12 C 1.48535 * 105.82061 * 25.33235 * 10 9 8 13 13 C 1.46495 * 119.99963 * 265.98331 * 3 2 1 14 14 H 1.08995 * 110.21474 * 185.84185 * 13 3 2 15 15 C 1.50128 * 110.24838 * 307.92678 * 13 3 2 16 16 C 1.54850 * 110.81395 * 216.65767 * 15 13 3 17 17 C 1.54405 * 110.06807 * 321.06879 * 16 15 13 18 18 N 1.43425 * 116.39179 * 318.65877 * 17 16 15 19 19 C 1.36943 * 120.53092 * 271.72567 * 18 17 16 20 20 H 1.08006 * 119.99727 * 152.79683 * 19 18 17 21 21 C 1.38804 * 120.00220 * 332.79025 * 19 18 17 22 22 N 1.31623 * 120.00055 * 321.54120 * 21 19 18 23 23 Si 1.86797 * 120.00069 * 141.53955 * 21 19 18 24 24 H 1.48494 * 109.47545 * 270.00244 * 23 21 19 25 25 H 1.48498 * 109.46985 * 30.00409 * 23 21 19 26 26 H 1.48503 * 109.47325 * 150.00070 * 23 21 19 27 27 C 1.50167 * 118.93224 * 91.45270 * 18 17 16 28 28 C 1.46239 * 107.53180 * 289.83955 * 27 18 17 29 29 H 1.09001 * 109.47142 * 305.75071 * 1 2 3 30 30 H 1.08998 * 109.47394 * 65.75017 * 1 2 3 31 31 H 1.08999 * 109.47125 * 185.74765 * 1 2 3 32 32 H 1.08995 * 109.46802 * 239.99962 * 2 1 3 33 33 H 1.09000 * 109.47157 * 119.99988 * 2 1 3 34 34 H 1.09003 * 110.30942 * 338.60145 * 8 6 4 35 35 H 1.08996 * 110.30883 * 100.66346 * 8 6 4 36 36 H 1.08998 * 109.91771 * 118.12314 * 9 8 6 37 37 H 1.08996 * 109.91421 * 239.42465 * 9 8 6 38 38 H 1.08998 * 109.47213 * 60.13123 * 11 10 9 39 39 H 1.09005 * 109.46778 * 180.12075 * 11 10 9 40 40 H 1.08990 * 109.47525 * 300.12617 * 11 10 9 41 41 H 1.08999 * 110.66246 * 202.36001 * 12 10 9 42 42 H 1.08995 * 110.66935 * 79.22532 * 12 10 9 43 43 H 1.08996 * 109.20791 * 336.99898 * 15 13 3 44 44 H 1.09001 * 109.21255 * 96.35672 * 15 13 3 45 45 H 1.09004 * 109.35658 * 81.33844 * 16 15 13 46 46 H 1.09002 * 109.35710 * 201.06333 * 16 15 13 47 47 H 1.08998 * 107.88645 * 196.92900 * 17 16 15 48 48 H 1.09003 * 108.09473 * 80.54478 * 17 16 15 49 49 H 0.96998 * 119.99884 * 354.23655 * 22 21 19 50 50 H 1.09003 * 109.84149 * 49.34620 * 27 18 17 51 51 H 1.08998 * 109.84765 * 170.33349 * 27 18 17 52 52 H 1.09001 * 108.52233 * 179.64488 * 28 27 18 53 53 H 1.08997 * 108.51798 * 297.32414 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1658 2.0438 1.1644 5 8 2.5156 3.2052 1.1611 6 6 1.8962 1.3417 2.4703 7 1 1.2505 0.4773 2.3157 8 6 1.2712 2.3151 3.4959 9 6 1.9322 1.9611 4.8410 10 7 2.8527 0.8313 4.5880 11 6 4.0421 0.9194 5.4455 12 6 3.2232 0.9246 3.1526 13 6 2.3462 2.0422 -1.2656 14 1 2.7886 3.0202 -1.0761 15 6 3.2861 1.1903 -2.0684 16 6 4.3133 2.0674 -2.8256 17 6 3.6277 3.3428 -3.3618 18 7 2.3197 3.1745 -3.9256 19 6 2.1679 2.8710 -5.2523 20 1 1.2948 2.3297 -5.5860 21 6 3.1359 3.2591 -6.1683 22 7 3.7271 4.4286 -6.0453 23 14 3.5996 2.1215 -7.5755 24 1 4.7126 1.2355 -7.1498 25 1 2.4247 1.2947 -7.9513 26 1 4.0300 2.9301 -8.7444 27 6 1.1197 3.3303 -3.0364 28 6 1.0948 2.1864 -2.1256 29 1 -0.3633 0.6004 0.8340 30 1 -0.3634 0.4221 -0.9370 31 1 -0.3633 -1.0225 0.1029 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.4955 3.3466 3.2240 35 1 0.1930 2.1652 3.5514 36 1 2.4909 2.8181 5.2171 37 1 1.1706 1.6652 5.5624 38 1 3.7384 0.8926 6.4920 39 1 4.7030 0.0778 5.2375 40 1 4.5675 1.8526 5.2434 41 1 3.5606 -0.0422 2.7789 42 1 3.9891 1.6852 3.0016 43 1 3.8170 0.5133 -1.3991 44 1 2.7139 0.6062 -2.7892 45 1 5.1196 2.3466 -2.1473 46 1 4.7243 1.5020 -3.6620 47 1 4.2742 3.7744 -4.1258 48 1 3.5550 4.0580 -2.5424 49 1 3.4290 5.0537 -5.3662 50 1 1.1996 4.2558 -2.4660 51 1 0.2117 3.3432 -3.6391 52 1 0.2319 2.2867 -1.4673 53 1 0.9757 1.2772 -2.7149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998191007.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:57 Heat of formation + Delta-G solvation = -0.168506 kcal Electronic energy + Delta-G solvation = -29854.734100 eV Core-core repulsion = 26148.165388 eV Total energy + Delta-G solvation = -3706.568711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67645 -38.91600 -37.55323 -35.84065 -33.47673 -32.32817 -31.87762 -30.66496 -29.93354 -29.14360 -26.39440 -25.86268 -24.41031 -23.68943 -22.91880 -22.08865 -21.32430 -19.99090 -19.29752 -18.51250 -17.64889 -17.08853 -16.46878 -15.97196 -15.23050 -15.14981 -14.66989 -14.47097 -14.06578 -14.03101 -13.80295 -13.72826 -13.57230 -13.41988 -13.18297 -13.15762 -12.63390 -12.45584 -12.23349 -12.21778 -11.87933 -11.75220 -11.73690 -11.50215 -11.40517 -11.25817 -10.97243 -10.82543 -10.66783 -10.52878 -10.38995 -10.22291 -10.03487 -9.95472 -9.82443 -9.58340 -9.29871 -8.80429 -8.50313 -8.23786 -6.84180 -6.07605 -3.18460 2.60085 3.00060 3.52494 3.54001 3.70988 3.72241 4.28745 4.40358 4.53931 4.59686 4.79907 4.89550 5.00133 5.02371 5.08015 5.10892 5.13457 5.20290 5.25773 5.29431 5.37887 5.39858 5.50457 5.52998 5.57047 5.59035 5.61802 5.69035 5.77601 5.78575 5.89004 5.98270 5.99015 6.05763 6.13478 6.29778 6.38006 6.45067 6.48015 6.54442 6.63633 6.65118 6.71283 6.81850 6.91011 6.97049 7.10607 7.38745 7.53495 8.07388 8.25957 8.59624 9.13120 9.87859 10.34978 11.12037 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003073 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.269095 B = 9108.378209 C = 9295.670259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 N -0.600 5.600 4 C 0.521 3.479 5 O -0.540 6.540 6 C -0.116 4.116 7 H 0.104 0.896 8 C -0.119 4.119 9 C 0.037 3.963 10 N -0.521 5.521 11 C 0.015 3.985 12 C 0.051 3.949 13 C 0.146 3.854 14 H 0.104 0.896 15 C -0.113 4.113 16 C -0.134 4.134 17 C 0.139 3.861 18 N -0.585 5.585 19 C -0.358 4.358 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.888 5.888 23 Si 1.049 2.951 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.137 3.863 28 C -0.133 4.133 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.018 0.982 49 H 0.270 0.730 50 H 0.027 0.973 51 H 0.061 0.939 52 H 0.046 0.954 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -10.115 20.496 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.332 5.332 4 C 0.308 3.692 5 O -0.417 6.417 6 C -0.138 4.138 7 H 0.122 0.878 8 C -0.157 4.157 9 C -0.091 4.091 10 N -0.245 5.245 11 C -0.134 4.134 12 C -0.077 4.077 13 C 0.044 3.956 14 H 0.122 0.878 15 C -0.151 4.151 16 C -0.175 4.175 17 C 0.010 3.990 18 N -0.308 5.308 19 C -0.486 4.486 20 H 0.070 0.930 21 C -0.221 4.221 22 N -0.526 5.526 23 Si 0.879 3.121 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.013 3.987 28 C -0.173 4.173 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.037 0.963 49 H 0.081 0.919 50 H 0.045 0.955 51 H 0.079 0.921 52 H 0.065 0.935 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.880 -10.165 19.290 21.994 hybrid contribution -0.702 0.655 1.116 1.473 sum -3.582 -9.510 20.407 22.797 Atomic orbital electron populations 1.22335 0.95819 1.02075 1.03048 1.21562 0.94557 0.82900 1.03200 1.48213 1.64649 1.13896 1.06418 1.20345 0.77082 0.86682 0.85097 1.90689 1.47129 1.16711 1.87136 1.22291 0.98855 0.99870 0.92775 0.87756 1.22398 1.00233 1.00312 0.92807 1.22887 0.96282 0.92254 0.97690 1.64779 1.14242 1.42133 1.03335 1.22528 0.92264 1.00789 0.97828 1.23113 0.95128 1.01416 0.88055 1.20483 0.96075 0.97753 0.81291 0.87777 1.21771 0.97648 0.97989 0.97736 1.22640 0.96716 0.99777 0.98336 1.20341 0.88580 0.93239 0.96796 1.43989 0.98839 1.82421 1.05517 1.19781 1.11111 1.34264 0.83475 0.92963 1.25621 0.99015 0.97307 1.00128 1.70745 1.46223 1.03754 1.31862 0.83760 0.76041 0.76068 0.76208 1.22069 1.21824 1.21847 1.20318 0.91895 0.94381 0.92138 1.21342 0.96370 1.01956 0.97650 0.92609 0.91458 0.91661 0.89706 0.90685 0.89562 0.90596 0.93379 0.90075 0.91156 0.91132 0.95122 0.89464 0.92725 0.93663 0.91354 0.93480 0.92407 0.91141 0.96331 0.91943 0.95468 0.92068 0.93517 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.54 37.16 0.35 -1.30 16 2 C 0.10 1.06 5.18 -4.04 -0.02 1.04 16 3 N -0.60 -8.35 2.27 -168.03 -0.38 -8.73 16 4 C 0.52 7.57 6.71 -10.99 -0.07 7.49 16 5 O -0.54 -10.04 15.26 5.55 0.08 -9.95 16 6 C -0.12 -1.26 2.70 -89.91 -0.24 -1.50 16 7 H 0.10 0.97 5.46 -51.93 -0.28 0.69 16 8 C -0.12 -1.22 6.46 -25.38 -0.16 -1.39 16 9 C 0.04 0.33 6.70 -2.75 -0.02 0.31 16 10 N -0.52 -4.97 5.55 -238.71 -1.33 -6.29 16 11 C 0.01 0.12 9.40 60.07 0.56 0.68 16 12 C 0.05 0.53 5.99 -1.90 -0.01 0.52 16 13 C 0.15 2.49 2.29 -69.60 -0.16 2.33 16 14 H 0.10 2.11 5.15 -51.93 -0.27 1.85 16 15 C -0.11 -1.96 4.17 -27.18 -0.11 -2.08 16 16 C -0.13 -2.69 6.40 -25.02 -0.16 -2.85 16 17 C 0.14 3.28 4.60 -4.93 -0.02 3.25 16 18 N -0.59 -14.35 2.47 -175.41 -0.43 -14.78 16 19 C -0.36 -9.78 9.37 -15.06 -0.14 -9.92 16 20 H 0.05 1.46 8.05 -52.48 -0.42 1.04 16 21 C -0.02 -0.46 4.61 -17.43 -0.08 -0.54 16 22 N -0.89 -26.33 12.13 55.49 0.67 -25.65 16 23 Si 1.05 25.05 30.05 -169.99 -5.11 19.94 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.14 2.88 6.12 -5.20 -0.03 2.85 16 28 C -0.13 -2.34 3.64 -30.19 -0.11 -2.45 16 29 H 0.05 0.53 7.59 -51.93 -0.39 0.13 16 30 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.91 6.88 -51.93 -0.36 0.55 16 33 H 0.07 0.64 6.46 -51.93 -0.34 0.30 16 34 H 0.09 1.07 6.99 -51.93 -0.36 0.70 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.43 7.73 -51.93 -0.40 0.03 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.25 8.00 -51.93 -0.42 -0.16 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.65 7.87 -51.93 -0.41 0.25 16 43 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 44 H 0.07 1.25 6.82 -51.93 -0.35 0.89 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.07 1.90 5.18 -51.93 -0.27 1.63 16 48 H 0.02 0.43 6.90 -51.93 -0.36 0.07 16 49 H 0.27 8.15 7.76 -40.82 -0.32 7.84 16 50 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 51 H 0.06 1.28 7.99 -51.93 -0.42 0.87 16 52 H 0.05 0.75 6.85 -51.93 -0.36 0.40 16 53 H 0.06 1.13 6.92 -51.93 -0.36 0.77 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -31.07 388.72 -10.46 -41.53 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -9.40 Total: 1.62 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.43 Total: -3.55 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -1.47 Total: -55.45 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.11 Total: 19.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.07 -10.46 -41.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998191007.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.365 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds