Wall clock time and date at job start Tue Mar 31 2020 14:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00151 * 2 1 4 4 C 1.46905 * 110.99781 * 123.95290 * 2 1 3 5 5 H 1.09000 * 109.47082 * 299.99843 * 4 2 1 6 6 C 1.52997 * 109.47305 * 59.99952 * 4 2 1 7 7 C 1.52999 * 109.47592 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46626 * 300.00035 * 7 6 4 9 9 C 1.52997 * 109.47164 * 59.99702 * 8 7 6 10 10 H 1.09000 * 109.47140 * 60.00051 * 9 8 7 11 11 C 1.50696 * 109.47238 * 179.97438 * 9 8 7 12 12 O 1.21284 * 120.00106 * 119.99913 * 11 9 8 13 13 N 1.34777 * 120.00144 * 300.00627 * 11 9 8 14 14 C 1.46506 * 119.99880 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47042 * 179.97438 * 14 13 11 16 16 H 1.08999 * 112.85232 * 45.32690 * 15 14 13 17 17 C 1.53775 * 113.61521 * 176.52923 * 15 14 13 18 18 C 1.53776 * 87.08161 * 139.97786 * 17 15 14 19 19 H 1.08999 * 113.61652 * 89.20460 * 18 17 15 20 20 N 1.46507 * 113.61221 * 220.01511 * 18 17 15 21 21 C 1.36935 * 119.99752 * 205.00012 * 20 18 17 22 22 H 1.07996 * 120.00481 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00019 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99928 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00218 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47059 * 90.00049 * 25 23 21 27 27 H 1.48503 * 109.47072 * 209.99948 * 25 23 21 28 28 H 1.48498 * 109.47082 * 329.99952 * 25 23 21 29 29 C 1.53781 * 113.61268 * 274.13438 * 15 14 13 30 30 C 1.52996 * 109.46987 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47690 * 296.04711 * 1 2 3 32 32 H 1.09002 * 109.46994 * 56.04955 * 1 2 3 33 33 H 1.09002 * 109.47285 * 176.04730 * 1 2 3 34 34 H 1.09005 * 109.46883 * 183.94924 * 3 2 1 35 35 H 1.09002 * 109.46747 * 303.94711 * 3 2 1 36 36 H 1.08997 * 109.47194 * 63.94974 * 3 2 1 37 37 H 1.09000 * 109.47140 * 59.99927 * 6 4 2 38 38 H 1.09002 * 109.47045 * 300.00019 * 6 4 2 39 39 H 1.08993 * 109.47839 * 180.02562 * 7 6 4 40 40 H 1.09000 * 109.47160 * 59.99666 * 7 6 4 41 41 H 1.09001 * 109.46998 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47050 * 299.99699 * 8 7 6 43 43 H 0.96999 * 120.00043 * 359.97438 * 13 11 9 44 44 H 1.09000 * 109.46872 * 299.99570 * 14 13 11 45 45 H 1.08996 * 109.47564 * 59.99367 * 14 13 11 46 46 H 1.09004 * 113.61083 * 254.52508 * 17 15 14 47 47 H 1.08995 * 113.61716 * 25.42882 * 17 15 14 48 48 H 0.96995 * 120.00042 * 25.00596 * 20 18 17 49 49 H 0.96994 * 120.00053 * 180.02562 * 24 23 21 50 50 H 1.09004 * 113.61569 * 334.56956 * 29 15 14 51 51 H 1.08998 * 113.61494 * 105.46881 * 29 15 14 52 52 H 1.08992 * 109.47534 * 60.00146 * 30 4 2 53 53 H 1.08996 * 109.47134 * 299.99341 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 1 1.6459 -0.3200 2.0688 6 6 1.5048 -2.2125 1.0493 7 6 2.0525 -3.0102 2.2345 8 6 3.5820 -2.9874 2.2012 9 6 4.0726 -1.5409 2.2896 10 1 3.7227 -1.0948 3.2205 11 6 5.5790 -1.5185 2.2574 12 8 6.1580 -0.9234 1.3734 13 7 6.2830 -2.1600 3.2110 14 6 7.7476 -2.1387 3.1794 15 6 8.2949 -2.9356 4.3653 16 1 7.7870 -3.8899 4.5046 17 6 9.8286 -3.0465 4.3776 18 6 9.7527 -2.8422 5.8999 19 1 9.6448 -3.7709 6.4603 20 7 10.8105 -1.9779 6.4294 21 6 11.2008 -2.0961 7.7367 22 1 10.7292 -2.8266 8.3772 23 6 12.2027 -1.2768 8.2386 24 7 12.7779 -0.3868 7.4579 25 14 12.7347 -1.4375 10.0221 26 1 13.8369 -2.4276 10.1226 27 1 13.2062 -0.1197 10.5186 28 1 11.5839 -1.8927 10.8428 29 6 8.4204 -2.1103 5.6568 30 6 3.5248 -0.7427 1.1042 31 1 -0.3634 0.4512 0.9232 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3634 -1.0252 -0.0708 34 1 3.0828 1.3431 -0.0708 35 1 1.5898 1.9162 -0.8525 36 1 1.7043 1.8723 0.9232 37 1 1.8543 -2.6585 0.1182 38 1 0.4151 -2.2287 1.0734 39 1 1.7034 -4.0407 2.1713 40 1 1.7026 -2.5641 3.1655 41 1 3.9722 -3.5553 3.0458 42 1 3.9318 -3.4335 1.2702 43 1 5.8201 -2.6358 3.9183 44 1 8.0974 -2.5852 2.2487 45 1 8.0975 -1.1083 3.2420 46 1 10.1976 -4.0302 4.0870 47 1 10.3295 -2.2334 3.8524 48 1 11.2343 -1.3220 5.8541 49 1 13.4782 0.1854 7.8086 50 1 8.5354 -1.0405 5.4819 51 1 7.6540 -2.3390 6.3973 52 1 3.8740 0.2879 1.1674 53 1 3.8746 -1.1884 0.1731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086253875.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:02 Heat of formation + Delta-G solvation = -42.793265 kcal Electronic energy + Delta-G solvation = -27492.461767 eV Core-core repulsion = 23784.044707 eV Total energy + Delta-G solvation = -3708.417060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39204 -40.13101 -39.37967 -36.63986 -36.05307 -34.98710 -32.42357 -32.00696 -30.76627 -28.86959 -28.22272 -26.45558 -25.87879 -25.11497 -24.10620 -22.39232 -22.31183 -21.25418 -20.68597 -20.36423 -19.04638 -18.18659 -17.29452 -16.91244 -16.51769 -16.41037 -15.99904 -15.97623 -15.65860 -15.43498 -15.33359 -15.06164 -14.86730 -14.58759 -14.27564 -14.14897 -13.67362 -13.40891 -13.27532 -13.23550 -13.02071 -12.91771 -12.88249 -12.66396 -12.59275 -12.37425 -12.28847 -12.18226 -12.13990 -12.07187 -11.60284 -11.55739 -11.51147 -11.40593 -11.15008 -11.05614 -10.82590 -10.58828 -10.04777 -9.28865 -8.97533 -7.94423 -5.22842 1.47256 1.49101 1.57413 1.65012 2.19552 2.56875 2.95830 3.37356 3.56926 3.70615 3.74814 3.76353 3.86351 3.92757 4.14531 4.16745 4.26264 4.28142 4.31685 4.36808 4.42201 4.45356 4.46425 4.48291 4.51424 4.57008 4.65260 4.69803 4.72214 4.78888 4.97287 4.98112 4.99441 5.01545 5.05579 5.07140 5.13671 5.16868 5.22830 5.23868 5.28555 5.31002 5.38070 5.45544 5.51478 5.54292 5.74317 6.09548 6.15442 6.27792 6.59651 7.28716 7.33108 8.11773 8.33339 9.29124 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.001873 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.262407 B =14948.835761 C =15175.664633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.558 5.558 3 C 0.020 3.980 4 C 0.089 3.911 5 H 0.044 0.956 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.107 4.107 9 C -0.097 4.097 10 H 0.114 0.886 11 C 0.510 3.490 12 O -0.590 6.590 13 N -0.712 5.712 14 C 0.138 3.862 15 C -0.093 4.093 16 H 0.124 0.876 17 C -0.138 4.138 18 C 0.143 3.857 19 H 0.082 0.918 20 N -0.730 5.730 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.153 4.153 30 C -0.088 4.088 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.053 0.947 51 H 0.070 0.930 52 H 0.052 0.948 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.478 -6.485 -12.975 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.283 5.283 3 C -0.128 4.128 4 C -0.019 4.019 5 H 0.062 0.938 6 C -0.149 4.149 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.118 4.118 10 H 0.132 0.868 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.364 5.364 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.142 0.858 17 C -0.178 4.178 18 C 0.033 3.967 19 H 0.100 0.900 20 N -0.368 5.368 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.193 4.193 30 C -0.126 4.126 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.253 0.747 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.071 0.929 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.885 -6.361 -13.826 32.649 hybrid contribution 0.760 1.133 1.542 2.060 sum -28.124 -5.227 -12.283 31.132 Atomic orbital electron populations 1.22471 0.86270 1.03061 1.00779 1.61999 1.08877 1.13916 1.43466 1.22436 1.00785 0.88781 1.00804 1.21655 0.93575 0.95202 0.91487 0.93819 1.21641 1.00924 0.93044 0.99327 1.21504 0.93641 1.01261 0.98440 1.21563 0.97154 0.92528 1.03223 1.21329 0.88998 0.99871 1.01631 0.86824 1.21231 0.91044 0.77289 0.80633 1.90691 1.73183 1.45260 1.37956 1.45923 1.06856 1.54172 1.29415 1.21192 0.79782 0.99298 0.98383 1.22461 0.95787 0.99736 0.93252 0.85836 1.23328 0.95383 1.01917 0.97127 1.22003 0.88046 0.93570 0.93042 0.89970 1.42645 1.42385 1.42192 1.09550 1.19749 1.14087 1.14779 0.88740 0.90173 1.25621 1.00182 0.99214 1.02319 1.69831 1.29661 1.26056 1.36818 0.85124 0.78254 0.76263 0.80037 1.21426 1.22556 1.19156 1.23736 0.99785 0.98674 0.97135 1.21335 0.94408 0.99499 0.97370 0.95455 0.90963 0.90162 0.92038 0.90620 0.95495 0.91972 0.90567 0.89706 0.90634 0.89366 0.92204 0.74704 0.91936 0.93981 0.90276 0.91754 0.79741 0.94157 0.92867 0.91161 0.92913 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.21 127.69 1.18 1.42 16 2 N -0.56 -8.74 4.89 -923.29 -4.51 -13.25 16 3 C 0.02 0.31 9.11 127.69 1.16 1.48 16 4 C 0.09 1.29 1.94 44.91 0.09 1.38 16 5 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 6 C -0.11 -1.22 4.97 30.59 0.15 -1.07 16 7 C -0.11 -0.89 5.92 30.60 0.18 -0.71 16 8 C -0.11 -1.16 5.10 30.60 0.16 -1.01 16 9 C -0.10 -1.54 2.52 -11.53 -0.03 -1.56 16 10 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 11 C 0.51 12.09 7.15 87.66 0.63 12.72 16 12 O -0.59 -19.94 15.98 -3.04 -0.05 -19.98 16 13 N -0.71 -14.27 5.45 -463.05 -2.52 -16.79 16 14 C 0.14 3.44 5.50 86.38 0.48 3.92 16 15 C -0.09 -2.21 3.75 -10.27 -0.04 -2.25 16 16 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.14 -4.19 7.40 31.12 0.23 -3.96 16 18 C 0.14 5.32 4.48 45.57 0.20 5.53 16 19 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 20 N -0.73 -36.77 5.40 -320.18 -1.73 -38.51 16 21 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 24 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 25 Si 0.97 46.13 29.55 68.60 2.03 48.16 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 C -0.15 -4.74 7.45 31.18 0.23 -4.51 16 30 C -0.09 -1.66 3.42 30.61 0.10 -1.56 16 31 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 33 H 0.08 0.74 6.30 -2.39 -0.02 0.73 16 34 H 0.06 1.13 6.23 -2.38 -0.01 1.12 16 35 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.66 6.40 -2.39 -0.02 0.65 16 39 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 0.65 7.56 -2.39 -0.02 0.63 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.42 5.57 7.89 -92.71 -0.73 4.84 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 1.30 7.87 -2.39 -0.02 1.28 16 46 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 48 H 0.37 20.42 7.92 -92.71 -0.73 19.69 16 49 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 51 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.05 1.18 6.30 -2.39 -0.02 1.17 16 53 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -72.22 407.81 -1.06 -73.28 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.58 Total: 34.15 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 6.03 Total: -6.94 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -8.48 Total: -128.67 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -72.22 -1.06 -73.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086253875.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.487 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds