Wall clock time and date at job start Tue Mar 31 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 120.00071 * 2 1 4 4 H 1.07994 * 119.99659 * 38.30240 * 3 2 1 5 5 C 1.38814 * 119.99609 * 218.30498 * 3 2 1 6 6 N 1.31614 * 120.00265 * 24.98388 * 5 3 2 7 7 Si 1.86803 * 119.99473 * 204.98002 * 5 3 2 8 8 H 1.48503 * 109.47021 * 355.00039 * 7 5 3 9 9 H 1.48507 * 109.46771 * 114.99508 * 7 5 3 10 10 H 1.48488 * 109.47289 * 234.99632 * 7 5 3 11 11 C 1.46498 * 120.00045 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47432 * 267.32142 * 11 2 1 13 13 H 1.09000 * 109.58054 * 298.67740 * 12 11 2 14 14 C 1.53192 * 109.58532 * 58.95558 * 12 11 2 15 15 C 1.53077 * 109.29460 * 174.28092 * 14 12 11 16 16 C 1.53040 * 109.65699 * 298.85226 * 15 14 12 17 17 C 1.53195 * 109.31265 * 61.30137 * 16 15 14 18 18 N 1.46921 * 109.58739 * 178.39557 * 12 11 2 19 19 C 1.34770 * 120.63230 * 6.57898 * 18 12 11 20 20 O 1.21285 * 120.00204 * 4.82160 * 19 18 12 21 21 C 1.50702 * 119.99869 * 184.81858 * 19 18 12 22 22 N 1.46908 * 109.47007 * 175.17426 * 21 19 18 23 23 C 1.46890 * 111.00106 * 290.46175 * 22 21 19 24 24 C 1.46903 * 110.99681 * 166.50350 * 22 21 19 25 25 C 1.53779 * 113.61442 * 285.26929 * 24 22 21 26 26 C 1.53778 * 87.08045 * 220.02114 * 25 24 22 27 27 C 1.53772 * 87.08275 * 25.43636 * 26 25 24 28 28 H 1.09000 * 109.46894 * 91.82029 * 1 2 3 29 29 H 1.09000 * 109.47181 * 211.82236 * 1 2 3 30 30 H 1.08993 * 109.47088 * 331.82653 * 1 2 3 31 31 H 0.97000 * 119.99996 * 4.87605 * 6 5 3 32 32 H 1.09006 * 109.46956 * 27.31964 * 11 2 1 33 33 H 1.09001 * 109.47031 * 147.31811 * 11 2 1 34 34 H 1.08998 * 109.50102 * 294.37830 * 14 12 11 35 35 H 1.09008 * 109.49483 * 54.47961 * 14 12 11 36 36 H 1.08996 * 109.45440 * 178.76147 * 15 14 12 37 37 H 1.09000 * 109.33083 * 58.86958 * 15 14 12 38 38 H 1.08994 * 109.50191 * 301.34488 * 16 15 14 39 39 H 1.09004 * 109.51865 * 181.26257 * 16 15 14 40 40 H 1.09000 * 109.58100 * 185.57386 * 17 16 15 41 41 H 1.09000 * 109.58964 * 65.15298 * 17 16 15 42 42 H 1.09000 * 109.47114 * 295.17502 * 21 19 18 43 43 H 1.09000 * 109.47271 * 55.18270 * 21 19 18 44 44 H 1.09002 * 109.47691 * 54.77747 * 23 22 21 45 45 H 1.08994 * 109.47296 * 174.78251 * 23 22 21 46 46 H 1.09003 * 109.47047 * 294.77675 * 23 22 21 47 47 H 1.08998 * 112.84721 * 56.58132 * 24 22 21 48 48 H 1.08992 * 113.61981 * 334.57618 * 25 24 22 49 49 H 1.09003 * 113.60941 * 105.47093 * 25 24 22 50 50 H 1.08999 * 113.61873 * 270.88428 * 26 25 24 51 51 H 1.09002 * 113.61191 * 139.98325 * 26 25 24 52 52 H 1.09000 * 113.61753 * 220.01565 * 27 26 25 53 53 H 1.09004 * 113.69384 * 89.12579 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7841 2.0205 0.5797 5 6 3.3138 1.3153 -0.7452 6 7 3.5108 0.5482 -1.7964 7 14 4.6004 2.5781 -0.2559 8 1 4.0909 3.3900 0.8783 9 1 5.8464 1.8818 0.1542 10 1 4.8868 3.4661 -1.4111 11 6 2.1975 -1.2687 0.0006 12 6 2.5109 -1.6761 1.4417 13 1 3.1395 -0.9171 1.9074 14 6 1.2056 -1.8168 2.2310 15 6 1.5153 -2.3614 3.6277 16 6 2.1635 -3.7427 3.5097 17 6 3.4799 -3.6201 2.7358 18 7 3.2119 -2.9673 1.4471 19 6 3.6012 -3.5422 0.2920 20 8 3.4525 -2.9543 -0.7583 21 6 4.2213 -4.9157 0.3055 22 7 4.4497 -5.3634 -1.0749 23 6 3.1779 -5.6409 -1.7556 24 6 5.3319 -6.5375 -1.1084 25 6 6.8090 -6.2061 -0.8377 26 6 7.1571 -7.2222 -1.9382 27 6 5.7645 -6.9428 -2.5274 28 1 -0.3633 -0.0326 -1.0272 29 1 -0.3633 -0.8732 0.5419 30 1 -0.3633 0.9059 0.4852 31 1 2.8134 -0.0575 -2.0924 32 1 1.5884 -2.0401 -0.4708 33 1 3.1283 -1.1511 -0.5544 34 1 0.7251 -0.8422 2.3163 35 1 0.5398 -2.5072 1.7129 36 1 0.5906 -2.4418 4.1992 37 1 2.1988 -1.6817 4.1366 38 1 1.4907 -4.4161 2.9788 39 1 2.3625 -4.1379 4.5059 40 1 3.8959 -4.6127 2.5632 41 1 4.1865 -3.0203 3.3094 42 1 5.1718 -4.8800 0.8379 43 1 3.5499 -5.6126 0.8070 44 1 2.5349 -4.7627 -1.6965 45 1 3.3702 -5.8807 -2.8012 46 1 2.6848 -6.4853 -1.2739 47 1 4.9533 -7.3685 -0.5132 48 1 7.0795 -5.1805 -1.0888 49 1 7.1484 -6.5035 0.1545 50 1 7.2789 -8.2407 -1.5695 51 1 7.9760 -6.9038 -2.5833 52 1 5.2607 -7.8349 -2.8994 53 1 5.7480 -6.1189 -3.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158090267.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:17 Heat of formation + Delta-G solvation = 10.780999 kcal Electronic energy + Delta-G solvation = -30129.034563 eV Core-core repulsion = 26422.940657 eV Total energy + Delta-G solvation = -3706.093905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58940 -40.10839 -38.44885 -37.46820 -35.89469 -33.92463 -33.46252 -32.18932 -29.51700 -28.23761 -27.34349 -27.04580 -26.19237 -25.52762 -24.07915 -23.36643 -22.17911 -21.61101 -20.25252 -19.77400 -19.34407 -17.88692 -17.26228 -16.78874 -16.64690 -16.18934 -15.99212 -15.71845 -15.50517 -15.48135 -15.34847 -15.00084 -14.82609 -14.58337 -14.37114 -13.98010 -13.93044 -13.61836 -13.30719 -13.18918 -13.02191 -12.89763 -12.81807 -12.66484 -12.63611 -12.56026 -12.33265 -11.92438 -11.90621 -11.85518 -11.70044 -11.61811 -11.44814 -11.37866 -11.29231 -11.09838 -10.45469 -10.11557 -9.43223 -9.21139 -8.79798 -8.06750 -5.51917 1.52271 1.62081 1.77774 1.79354 1.99748 2.65109 2.98066 3.26695 3.56536 3.66759 3.75761 3.83220 3.88763 3.96441 3.97810 4.02593 4.05306 4.15688 4.22895 4.27178 4.36883 4.48179 4.50887 4.53927 4.59376 4.60027 4.66776 4.69548 4.80562 4.86489 4.88474 4.92075 4.94796 5.00448 5.02692 5.05773 5.06995 5.09895 5.11731 5.23722 5.25350 5.32824 5.45969 5.52488 5.59348 5.90177 5.95840 5.96198 6.23415 6.40158 6.64199 7.15286 7.45326 7.83590 8.28055 8.98411 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.004524 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.819734 B = 6187.715909 C = 7466.701583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.367 4.367 4 H 0.042 0.958 5 C -0.067 4.067 6 N -0.921 5.921 7 Si 1.115 2.885 8 H -0.267 1.267 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.162 3.838 12 C 0.140 3.860 13 H 0.038 0.962 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.124 4.124 17 C 0.099 3.901 18 N -0.612 5.612 19 C 0.490 3.510 20 O -0.548 6.548 21 C 0.053 3.947 22 N -0.539 5.539 23 C 0.036 3.964 24 C 0.053 3.947 25 C -0.131 4.131 26 C -0.130 4.130 27 C -0.131 4.131 28 H -0.016 1.016 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.252 0.748 32 H 0.010 0.990 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.040 0.960 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.069 0.931 52 H 0.077 0.923 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -20.450 11.616 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.345 5.345 3 C -0.497 4.497 4 H 0.059 0.941 5 C -0.266 4.266 6 N -0.560 5.560 7 Si 0.939 3.061 8 H -0.192 1.192 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.037 3.963 12 C 0.034 3.966 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.022 4.022 18 N -0.348 5.348 19 C 0.279 3.721 20 O -0.424 6.424 21 C -0.078 4.078 22 N -0.264 5.264 23 C -0.112 4.112 24 C -0.055 4.055 25 C -0.169 4.169 26 C -0.167 4.167 27 C -0.169 4.169 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.135 0.865 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.119 0.881 51 H 0.088 0.912 52 H 0.096 0.904 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.620 -19.174 10.429 22.310 hybrid contribution -2.373 -0.494 0.131 2.427 sum 2.247 -19.668 10.560 22.436 Atomic orbital electron populations 1.21191 0.84971 0.99458 0.96545 1.44347 1.01015 1.02688 1.86460 1.20020 1.10641 0.92722 1.26340 0.94059 1.27343 1.03135 1.03580 0.92562 1.70791 1.37767 1.26061 1.21419 0.82908 0.73715 0.73660 0.75827 1.19164 1.21638 1.21522 1.21377 0.97592 0.84190 0.93164 1.21689 0.92874 0.83213 0.98828 0.94417 1.21798 0.95757 1.00582 0.96656 1.21536 1.01541 0.97255 0.94979 1.21882 0.95962 0.96664 1.01671 1.22060 0.98322 0.98880 0.82956 1.48422 1.57803 1.21439 1.07144 1.21393 0.78430 0.88948 0.83359 1.90854 1.54812 1.63787 1.32946 1.21921 1.02188 0.92059 0.91587 1.61763 1.15387 1.34531 1.14702 1.22211 0.90330 0.99274 0.99383 1.23368 0.92568 0.90703 0.98848 1.22954 0.94247 0.99546 1.00140 1.22701 0.96434 0.99893 0.97704 1.22934 0.97491 1.00943 0.95537 0.99760 0.93046 0.94183 0.93789 0.97162 0.90391 0.92279 0.93312 0.90249 0.92097 0.91724 0.87477 0.87210 0.90953 0.86511 0.89712 0.93964 0.91344 0.94208 0.89765 0.91715 0.89834 0.88063 0.91192 0.90413 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.86 9.73 127.77 1.24 7.10 16 2 N -0.62 -34.43 2.25 -726.93 -1.64 -36.06 16 3 C -0.37 -22.20 9.37 84.03 0.79 -21.42 16 4 H 0.04 2.50 7.94 -2.91 -0.02 2.48 16 5 C -0.07 -4.14 4.87 84.86 0.41 -3.73 16 6 N -0.92 -61.96 12.29 21.65 0.27 -61.69 16 7 Si 1.11 54.84 29.99 68.60 2.06 56.90 16 8 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 C 0.16 8.61 2.83 86.38 0.24 8.86 16 12 C 0.14 5.89 3.20 44.98 0.14 6.03 16 13 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.11 -3.74 4.00 30.68 0.12 -3.62 16 15 C -0.12 -2.74 5.88 30.63 0.18 -2.56 16 16 C -0.12 -2.23 6.08 30.67 0.19 -2.04 16 17 C 0.10 2.12 6.36 86.36 0.55 2.67 16 18 N -0.61 -20.81 2.97 -795.03 -2.36 -23.18 16 19 C 0.49 18.31 7.13 87.66 0.62 18.93 16 20 O -0.55 -27.32 10.42 -3.04 -0.03 -27.35 16 21 C 0.05 1.37 3.76 85.56 0.32 1.69 16 22 N -0.54 -15.16 4.35 -898.50 -3.91 -19.06 16 23 C 0.04 1.03 9.06 127.69 1.16 2.19 16 24 C 0.05 1.06 3.17 45.44 0.14 1.20 16 25 C -0.13 -2.47 7.24 31.12 0.23 -2.25 16 26 C -0.13 -2.02 8.08 31.12 0.25 -1.77 16 27 C -0.13 -2.55 6.88 31.12 0.21 -2.33 16 28 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.05 2.12 6.24 -2.39 -0.01 2.10 16 30 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 31 H 0.25 17.85 7.12 -92.71 -0.66 17.19 16 32 H 0.01 0.56 7.14 -2.38 -0.02 0.54 16 33 H 0.08 4.88 3.59 -2.39 -0.01 4.87 16 34 H 0.06 2.24 6.69 -2.39 -0.02 2.22 16 35 H 0.05 1.68 7.85 -2.38 -0.02 1.66 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.11 1.61 5.92 -2.39 -0.01 1.59 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.12 2.51 7.35 -2.39 -0.02 2.49 16 43 H 0.09 1.65 7.61 -2.39 -0.02 1.64 16 44 H 0.04 1.54 6.30 -2.39 -0.02 1.53 16 45 H 0.07 1.88 7.48 -2.39 -0.02 1.87 16 46 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -81.57 392.62 2.16 -79.41 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.97 Total: 22.09 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 6.81 Total: 8.95 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -7.64 Total: -140.00 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.03 Total: -27.35 kcal Atomic # 14 Polarization: 54.84 SS G_CDS: 2.06 Total: 56.90 kcal Total: -81.57 2.16 -79.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158090267.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.187 kcal (2) G-P(sol) polarization free energy of solvation -81.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds