Wall clock time and date at job start Tue Mar 31 2020 14:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99805 * 2 1 4 4 C 1.46899 * 110.99769 * 123.95279 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04707 * 4 2 1 6 6 N 1.46894 * 109.47515 * 179.97438 * 5 4 2 7 7 C 1.47900 * 111.00063 * 290.81228 * 6 5 4 8 8 C 1.55029 * 104.87165 * 213.76968 * 7 6 5 9 9 C 1.54484 * 101.60043 * 36.40859 * 8 7 6 10 10 C 1.47604 * 111.00593 * 169.99995 * 6 5 4 11 11 C 1.52328 * 110.21926 * 206.56543 * 9 8 7 12 12 C 1.53263 * 109.22088 * 181.62813 * 11 9 8 13 13 C 1.53044 * 109.18302 * 56.52467 * 12 11 9 14 14 N 1.46851 * 109.64009 * 300.24563 * 13 12 11 15 15 C 1.46899 * 110.99951 * 186.31836 * 14 13 12 16 16 C 1.52996 * 109.47628 * 293.95537 * 15 14 13 17 17 C 1.53001 * 109.47514 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00400 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99605 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00190 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47204 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47378 * 119.99456 * 22 20 18 25 25 H 1.48498 * 109.46935 * 239.99918 * 22 20 18 26 26 C 1.46984 * 111.13560 * 62.27249 * 14 13 12 27 27 H 1.08995 * 109.47407 * 296.04618 * 1 2 3 28 28 H 1.09006 * 109.46770 * 56.04664 * 1 2 3 29 29 H 1.09003 * 109.46848 * 176.04346 * 1 2 3 30 30 H 1.08998 * 109.47200 * 183.95269 * 3 2 1 31 31 H 1.08998 * 109.47707 * 303.95146 * 3 2 1 32 32 H 1.09001 * 109.47500 * 63.95378 * 3 2 1 33 33 H 1.09002 * 109.47043 * 186.04778 * 4 2 1 34 34 H 1.09001 * 109.47354 * 306.04839 * 4 2 1 35 35 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 36 36 H 1.08998 * 109.47533 * 59.99633 * 5 4 2 37 37 H 1.09001 * 110.36269 * 332.61333 * 7 6 5 38 38 H 1.09003 * 110.36576 * 94.92083 * 7 6 5 39 39 H 1.09002 * 111.00332 * 278.33084 * 8 7 6 40 40 H 1.08997 * 111.00388 * 154.48422 * 8 7 6 41 41 H 1.09003 * 109.91545 * 243.06225 * 10 6 5 42 42 H 1.08999 * 109.91177 * 4.14885 * 10 6 5 43 43 H 1.08991 * 109.51541 * 301.55068 * 11 9 8 44 44 H 1.08996 * 109.51148 * 61.70788 * 11 9 8 45 45 H 1.09004 * 109.52064 * 176.43373 * 12 11 9 46 46 H 1.08998 * 109.51930 * 296.60905 * 12 11 9 47 47 H 1.09001 * 109.44113 * 60.29540 * 13 12 11 48 48 H 1.08992 * 109.44675 * 180.19443 * 13 12 11 49 49 H 1.09008 * 109.46989 * 53.96030 * 15 14 13 50 50 H 1.09001 * 109.47477 * 173.95418 * 15 14 13 51 51 H 1.08995 * 109.47295 * 299.99944 * 16 15 14 52 52 H 1.09008 * 109.47084 * 60.00035 * 16 15 14 53 53 H 1.08995 * 109.47120 * 300.00450 * 17 16 15 54 54 H 1.08999 * 109.46695 * 60.00170 * 17 16 15 55 55 H 0.97000 * 119.99449 * 180.02562 * 21 20 18 56 56 H 1.09003 * 109.44725 * 179.45925 * 26 14 13 57 57 H 1.09004 * 109.44091 * 59.55399 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1584 -3.0087 2.1076 7 6 3.6354 -3.0718 2.0654 8 6 3.9910 -4.4631 2.6496 9 6 2.8393 -5.3341 2.1007 10 6 1.6295 -4.3867 2.1078 11 6 2.5951 -6.5241 3.0198 12 6 1.4773 -7.3935 2.4334 13 6 1.8618 -7.8169 1.0139 14 7 2.0530 -6.6248 0.1779 15 6 2.2759 -6.9964 -1.2257 16 6 3.6042 -7.7453 -1.3504 17 6 3.8361 -8.1328 -2.8123 18 6 5.1441 -8.8709 -2.9350 19 1 5.7494 -9.0465 -2.0578 20 6 5.5682 -9.3222 -4.1668 21 7 4.8309 -9.1088 -5.2347 22 14 7.1893 -10.2377 -4.3187 23 1 7.8229 -10.3480 -2.9802 24 1 6.9410 -11.5974 -4.8617 25 1 8.0926 -9.4962 -5.2349 26 6 3.1546 -5.7937 0.6840 27 1 -0.3634 0.4512 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3433 -0.0708 31 1 1.5899 1.9164 -0.8524 32 1 1.7044 1.8724 0.9233 33 1 3.0797 -0.6611 1.1757 34 1 1.5611 -0.3872 2.0628 35 1 0.5472 -2.3475 0.9323 36 1 2.0658 -2.6214 0.0452 37 1 3.9893 -2.9905 1.0377 38 1 4.0666 -2.2812 2.6795 39 1 3.9807 -4.4435 3.7394 40 1 4.9546 -4.8091 2.2758 41 1 1.0314 -4.5548 3.0034 42 1 1.0205 -4.5507 1.2188 43 1 3.5083 -7.1130 3.1034 44 1 2.2993 -6.1675 4.0064 45 1 1.3417 -8.2796 3.0536 46 1 0.5492 -6.8227 2.4045 47 1 2.7880 -8.3908 1.0448 48 1 1.0680 -8.4328 0.5914 49 1 1.4633 -7.6390 -1.5649 50 1 2.3074 -6.0961 -1.8394 51 1 4.4167 -7.1028 -1.0113 52 1 3.5727 -8.6457 -0.7368 53 1 3.0235 -8.7754 -3.1510 54 1 3.8674 -7.2327 -3.4261 55 1 5.1291 -9.4266 -6.1013 56 1 3.2785 -4.9236 0.0393 57 1 4.0761 -6.3760 0.6881 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277951668.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:39 Heat of formation + Delta-G solvation = -22.408291 kcal Electronic energy + Delta-G solvation = -29114.712383 eV Core-core repulsion = 25543.012376 eV Total energy + Delta-G solvation = -3571.700006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 323.263 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51488 -39.17127 -38.06513 -36.13556 -34.85471 -33.25129 -32.28803 -30.29923 -29.78148 -28.49349 -28.41232 -26.34227 -25.88809 -24.70146 -23.65604 -22.87268 -22.34882 -21.55217 -21.21201 -19.27626 -18.55162 -17.23608 -16.80717 -16.71740 -16.55143 -16.36873 -16.09068 -15.75237 -15.43140 -15.36206 -15.17388 -14.98185 -14.55790 -14.30793 -14.21830 -13.84114 -13.65712 -13.53638 -13.42728 -13.20240 -13.09671 -13.04396 -12.74353 -12.68100 -12.62068 -12.60615 -12.49160 -12.43107 -12.24189 -12.01054 -11.89085 -11.68976 -11.49978 -11.40763 -11.35936 -11.32793 -11.07423 -11.04120 -10.60214 -9.34187 -9.24032 -9.17488 -8.23755 -6.36220 1.35742 1.36030 1.49296 2.36679 2.75601 2.94749 3.08190 3.37637 3.60305 3.66866 3.82177 3.95631 4.07584 4.14264 4.17091 4.24027 4.29931 4.30377 4.34507 4.38239 4.45559 4.47784 4.58209 4.59121 4.61972 4.64780 4.67193 4.72150 4.76986 4.83503 4.84483 4.89995 4.92695 4.96001 4.99181 5.00803 5.03144 5.07111 5.10027 5.12147 5.16082 5.17191 5.20362 5.25523 5.43706 5.44813 5.48614 5.65654 5.79279 5.94087 6.01674 6.08480 6.11890 6.18852 6.21924 6.22740 6.80113 7.33236 8.87450 Molecular weight = 323.26amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.002846 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.921310 B = 9836.289811 C =11183.654272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.569 5.569 3 C 0.027 3.973 4 C 0.070 3.930 5 C 0.062 3.938 6 N -0.530 5.530 7 C 0.043 3.957 8 C -0.117 4.117 9 C -0.068 4.068 10 C 0.067 3.933 11 C -0.100 4.100 12 C -0.108 4.108 13 C 0.048 3.952 14 N -0.529 5.529 15 C 0.065 3.935 16 C -0.123 4.123 17 C 0.030 3.970 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.000 4.000 21 N -0.931 5.931 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.275 1.275 25 H -0.276 1.276 26 C 0.073 3.927 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.034 0.966 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.023 0.977 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.044 0.956 52 H 0.047 0.953 53 H -0.008 1.008 54 H -0.011 1.011 55 H 0.265 0.735 56 H 0.053 0.947 57 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 16.082 19.888 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.294 5.294 3 C -0.121 4.121 4 C -0.058 4.058 5 C -0.067 4.067 6 N -0.254 5.254 7 C -0.085 4.085 8 C -0.155 4.155 9 C -0.069 4.069 10 C -0.061 4.061 11 C -0.138 4.138 12 C -0.146 4.146 13 C -0.080 4.080 14 N -0.251 5.251 15 C -0.063 4.063 16 C -0.162 4.162 17 C -0.008 4.008 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.198 4.198 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.055 4.055 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.065 0.935 53 H 0.011 0.989 54 H 0.008 0.992 55 H 0.073 0.927 56 H 0.071 0.929 57 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.489 16.383 19.755 27.032 hybrid contribution 1.568 -1.084 -1.099 2.200 sum -6.920 15.299 18.656 25.100 Atomic orbital electron populations 1.22442 0.86666 1.02422 1.00984 1.61907 1.08981 1.14917 1.43556 1.22385 1.00857 0.87823 1.01059 1.21934 0.99952 0.92664 0.91284 1.22159 0.99876 0.93408 0.91212 1.63678 1.06662 1.13741 1.41323 1.23099 0.87869 0.98155 0.99371 1.22722 0.97497 0.93624 1.01686 1.21225 0.96091 0.96062 0.93571 1.22679 0.96056 0.85479 1.01873 1.21452 0.98723 0.95177 0.98443 1.21595 0.99077 1.00288 0.93642 1.22179 0.99776 0.91366 0.94699 1.62305 1.41975 1.19286 1.01572 1.22095 0.96017 0.98910 0.89312 1.21966 0.97635 0.98903 0.97715 1.18905 0.95174 0.94533 0.92196 1.21684 1.06407 1.36360 0.93780 0.92766 1.25986 1.01225 0.97053 0.95514 1.70101 1.39816 1.47699 0.99542 0.85409 0.78976 0.78267 0.78473 1.18797 1.20089 1.20160 1.21891 0.91921 0.96102 0.95630 0.95028 0.90695 0.91588 0.91323 0.90597 0.95053 0.91131 0.93992 0.91000 0.95889 0.94764 0.89324 0.88933 0.91087 0.89934 0.92624 0.92424 0.89623 0.89990 0.90802 0.95916 0.91013 0.91123 0.92016 0.93743 0.93477 0.98946 0.99216 0.92668 0.92853 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.32 127.69 1.19 1.56 16 2 N -0.57 -10.76 5.02 -948.84 -4.76 -15.52 16 3 C 0.03 0.40 9.57 127.69 1.22 1.62 16 4 C 0.07 1.32 5.00 86.30 0.43 1.75 16 5 C 0.06 1.32 4.49 86.30 0.39 1.71 16 6 N -0.53 -10.85 5.17 -886.07 -4.58 -15.43 16 7 C 0.04 0.83 5.48 86.81 0.48 1.31 16 8 C -0.12 -2.18 5.98 31.79 0.19 -1.99 16 9 C -0.07 -1.44 0.53 -51.93 -0.03 -1.47 16 10 C 0.07 1.39 5.18 86.39 0.45 1.84 16 11 C -0.10 -1.85 4.63 30.46 0.14 -1.71 16 12 C -0.11 -2.11 5.92 30.70 0.18 -1.93 16 13 C 0.05 1.25 5.02 86.33 0.43 1.69 16 14 N -0.53 -15.57 4.30 -897.57 -3.86 -19.42 16 15 C 0.06 2.32 5.37 86.30 0.46 2.79 16 16 C -0.12 -5.27 4.45 30.59 0.14 -5.13 16 17 C 0.03 1.61 4.97 29.85 0.15 1.76 16 18 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 19 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 20 C 0.00 0.01 5.46 84.65 0.46 0.47 16 21 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 22 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.07 2.03 3.41 86.04 0.29 2.32 16 27 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 29 H 0.07 1.12 6.47 -2.39 -0.02 1.10 16 30 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.03 0.41 8.14 -2.39 -0.02 0.40 16 33 H 0.07 1.34 7.41 -2.39 -0.02 1.32 16 34 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 35 H 0.07 1.52 6.45 -2.39 -0.02 1.50 16 36 H 0.02 0.60 7.85 -2.39 -0.02 0.58 16 37 H 0.03 0.77 7.29 -2.39 -0.02 0.75 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.46 8.02 -2.39 -0.02 1.44 16 40 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 41 H 0.08 1.58 7.72 -2.39 -0.02 1.56 16 42 H 0.06 1.37 6.83 -2.39 -0.02 1.35 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.40 7.61 -2.39 -0.02 1.38 16 47 H 0.02 0.67 6.78 -2.39 -0.02 0.65 16 48 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 49 H 0.07 2.53 8.06 -2.38 -0.02 2.51 16 50 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.04 1.91 6.47 -2.39 -0.02 1.90 16 52 H 0.05 2.00 6.69 -2.38 -0.02 1.98 16 53 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 54 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 55 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 56 H 0.05 1.64 7.56 -2.39 -0.02 1.62 16 57 H 0.02 0.78 6.53 -2.38 -0.02 0.76 16 Total: -1.00 -65.07 417.99 -3.30 -68.36 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.78 Total: 17.45 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 6.81 Total: -25.15 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -12.91 Total: -107.78 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.07 -3.30 -68.36 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277951668.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.956 kcal (2) G-P(sol) polarization free energy of solvation -65.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds