Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47053 * 2 1 4 4 C 1.50696 * 109.47102 * 120.00180 * 2 1 3 5 5 N 1.30297 * 126.34675 * 294.83175 * 4 2 1 6 6 N 1.28533 * 110.05032 * 180.31323 * 5 4 2 7 7 C 1.31214 * 109.86201 * 359.72310 * 6 5 4 8 8 N 1.38583 * 126.47322 * 179.97438 * 7 6 5 9 9 C 1.46904 * 110.99899 * 245.91699 * 8 7 6 10 10 C 1.46894 * 110.99881 * 9.87141 * 8 7 6 11 11 H 1.08999 * 109.47397 * 54.99681 * 10 8 7 12 12 C 1.53005 * 109.47449 * 294.99966 * 10 8 7 13 13 C 1.50699 * 109.47406 * 174.99995 * 10 8 7 14 14 H 1.08000 * 119.99529 * 0.02562 * 13 10 8 15 15 C 1.37875 * 120.00431 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99888 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00160 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.47024 * 60.00140 * 17 15 13 19 19 H 1.48498 * 109.47586 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47086 * 300.00615 * 17 15 13 21 21 N 1.36456 * 107.05488 * 359.97438 * 7 6 5 22 22 C 1.46494 * 127.13748 * 180.02562 * 21 7 6 23 23 C 1.52994 * 109.47143 * 266.30452 * 22 21 7 24 24 H 1.09002 * 109.47177 * 54.24618 * 23 22 21 25 25 C 1.52995 * 109.47349 * 294.24085 * 23 22 21 26 26 N 1.46904 * 109.47089 * 174.24076 * 23 22 21 27 27 C 1.46902 * 111.00031 * 178.28009 * 26 23 22 28 28 C 1.46898 * 111.00301 * 302.23043 * 26 23 22 29 29 H 1.08999 * 109.47030 * 64.57838 * 1 2 3 30 30 H 1.08995 * 109.47058 * 184.57733 * 1 2 3 31 31 H 1.08994 * 109.47258 * 304.57793 * 1 2 3 32 32 H 1.09005 * 109.46944 * 240.00129 * 2 1 3 33 33 H 1.09002 * 109.46932 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47147 * 299.99935 * 3 2 1 35 35 H 1.09000 * 109.47604 * 60.00200 * 3 2 1 36 36 H 1.08999 * 109.46842 * 52.38746 * 9 8 7 37 37 H 1.09001 * 109.46968 * 172.38382 * 9 8 7 38 38 H 1.08996 * 109.46737 * 292.38666 * 9 8 7 39 39 H 1.08998 * 109.46726 * 59.99925 * 12 10 8 40 40 H 1.08996 * 109.47730 * 180.02562 * 12 10 8 41 41 H 1.09004 * 109.47191 * 300.00597 * 12 10 8 42 42 H 0.96996 * 119.99534 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47249 * 146.30215 * 22 21 7 44 44 H 1.09001 * 109.47237 * 26.30566 * 22 21 7 45 45 H 1.09001 * 109.47072 * 60.00383 * 25 23 22 46 46 H 1.08993 * 109.47300 * 300.00168 * 25 23 22 47 47 H 1.09003 * 109.47382 * 179.97438 * 25 23 22 48 48 H 1.08999 * 109.47252 * 60.00075 * 27 26 23 49 49 H 1.09000 * 109.47101 * 180.02562 * 27 26 23 50 50 H 1.09001 * 109.46848 * 299.99715 * 27 26 23 51 51 H 1.09005 * 109.46561 * 66.56335 * 28 26 23 52 52 H 1.08996 * 109.47552 * 186.55841 * 28 26 23 53 53 H 1.09002 * 109.47283 * 306.56570 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.8742 -0.3231 2.4644 6 7 2.4339 -1.1595 3.2639 7 6 2.9785 -2.1363 2.5776 8 7 3.6696 -3.2207 3.0943 9 6 5.0841 -3.1798 2.6998 10 6 3.5322 -3.2848 4.5554 11 1 2.4751 -3.2952 4.8208 12 6 4.2040 -2.0628 5.1851 13 6 4.1911 -4.5397 5.0674 14 1 4.6649 -5.2212 4.3764 15 6 4.1899 -4.8173 6.4179 16 7 3.6133 -3.9871 7.2593 17 14 5.0060 -6.3732 7.0524 18 1 6.4461 -6.3598 6.6901 19 1 4.8672 -6.4381 8.5294 20 1 4.3531 -7.5589 6.4417 21 7 2.7357 -1.8827 1.2590 22 6 3.1486 -2.6946 0.1116 23 6 4.4815 -2.1731 -0.4289 24 1 5.2128 -2.1395 0.3787 25 6 4.2857 -0.7668 -0.9986 26 7 4.9638 -3.0682 -1.4892 27 6 6.2241 -2.5757 -2.0610 28 6 5.1133 -4.4420 -0.9909 29 1 -0.3633 0.4412 -0.9282 30 1 -0.3633 -1.0243 0.0820 31 1 -0.3633 0.5832 0.8461 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 5.5048 -2.2075 2.9562 37 1 5.6308 -3.9624 3.2260 38 1 5.1662 -3.3392 1.6247 39 1 3.7274 -1.1552 4.8148 40 1 4.1024 -2.1106 6.2692 41 1 5.2611 -2.0523 4.9196 42 1 3.6128 -4.1823 8.2095 43 1 2.3906 -2.6323 -0.6692 44 1 3.2642 -3.7325 0.4237 45 1 3.9279 -0.1026 -0.2118 46 1 3.5545 -0.8004 -1.8061 47 1 5.2355 -0.3950 -1.3832 48 1 6.9812 -2.5208 -1.2787 49 1 6.5586 -3.2566 -2.8437 50 1 6.0675 -1.5839 -2.4853 51 1 4.1319 -4.8483 -0.7460 52 1 5.5802 -5.0583 -1.7591 53 1 5.7384 -4.4387 -0.0979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395792659.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = 87.002370 kcal Electronic energy + Delta-G solvation = -30425.329103 eV Core-core repulsion = 26754.833155 eV Total energy + Delta-G solvation = -3670.495948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.238 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.03388 -39.54984 -39.16357 -36.64152 -35.76360 -34.66971 -32.08071 -30.87599 -30.21651 -29.55932 -28.10243 -27.28728 -27.16295 -26.70792 -25.16440 -24.22340 -23.27186 -21.93456 -20.60730 -20.56833 -18.63023 -18.07014 -17.56232 -17.16575 -16.67824 -16.42914 -16.31761 -15.97784 -15.57826 -15.28890 -15.09493 -15.00148 -14.83124 -14.42188 -13.99353 -13.87728 -13.48898 -13.25111 -13.20121 -13.17046 -13.08165 -12.99332 -12.91837 -12.75764 -12.69227 -12.53490 -12.46104 -12.36451 -12.20159 -12.10840 -11.99830 -11.98421 -11.85318 -11.75856 -11.29007 -11.02451 -10.84707 -10.50836 -10.44999 -9.41146 -9.06987 -8.13293 -6.28969 0.85229 1.29779 1.43626 1.45827 1.53611 1.92997 2.40046 2.79282 3.06959 3.16109 3.39929 3.49751 3.59434 3.83235 3.97134 4.08247 4.17480 4.18195 4.24270 4.33182 4.37392 4.41946 4.47539 4.51903 4.58755 4.67163 4.69146 4.70523 4.75161 4.82406 4.84967 4.90278 4.94624 4.97853 5.02523 5.05162 5.07187 5.11507 5.11751 5.21172 5.24161 5.38198 5.43134 5.50493 5.60466 5.61890 5.83103 5.91507 5.98353 6.07840 6.20255 6.58810 6.79859 7.39831 7.91160 8.93098 Molecular weight = 323.24amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.004509 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.493447 B = 6208.816375 C = 7861.046046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.139 4.139 4 C 0.186 3.814 5 N -0.328 5.328 6 N -0.361 5.361 7 C 0.360 3.640 8 N -0.455 5.455 9 C 0.041 3.959 10 C 0.243 3.757 11 H 0.000 1.000 12 C -0.156 4.156 13 C -0.526 4.526 14 H 0.070 0.930 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.269 1.269 21 N -0.473 5.473 22 C 0.111 3.889 23 C 0.067 3.933 24 H 0.031 0.969 25 C -0.156 4.156 26 N -0.532 5.532 27 C 0.020 3.980 28 C 0.011 3.989 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.017 0.983 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.123 0.877 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.019 0.981 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 4.790 -24.703 25.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.197 4.197 4 C -0.083 4.083 5 N -0.166 5.166 6 N -0.205 5.205 7 C 0.003 3.997 8 N -0.179 5.179 9 C -0.106 4.106 10 C 0.138 3.862 11 H 0.018 0.982 12 C -0.216 4.216 13 C -0.564 4.564 14 H 0.088 0.912 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.194 1.194 21 N -0.169 5.169 22 C -0.012 4.012 23 C -0.043 4.043 24 H 0.049 0.951 25 C -0.213 4.213 26 N -0.257 5.257 27 C -0.128 4.128 28 C -0.137 4.137 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.037 0.963 49 H 0.104 0.896 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.107 0.893 53 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.478 5.174 -23.880 24.478 hybrid contribution 1.556 -1.051 1.360 2.319 sum 3.035 4.123 -22.519 23.094 Atomic orbital electron populations 1.21816 0.92407 1.01867 1.03631 1.19967 0.96942 0.96052 0.89342 1.21872 1.01010 0.93304 1.03479 1.25454 0.98125 0.86672 0.98013 1.73823 1.20396 1.23086 0.99296 1.74721 1.17819 1.02021 1.25915 1.23085 1.01155 0.93159 0.82343 1.59154 1.11883 1.31112 1.15719 1.22519 0.85959 1.00990 1.01114 1.18899 0.95051 0.94484 0.77805 0.98183 1.22262 0.97552 0.98499 1.03267 1.21267 1.36687 1.05895 0.92572 0.91165 1.25785 0.95895 1.00045 0.96894 1.70084 1.44556 1.37869 1.03182 0.85449 0.79137 0.79222 0.76838 1.19006 1.21254 1.19441 1.46299 1.43313 1.21079 1.06184 1.22126 0.98349 0.94717 0.85958 1.22006 0.94263 0.95014 0.92994 0.95146 1.22251 1.03869 0.93407 1.01737 1.62065 1.30562 1.02017 1.31063 1.22540 0.88560 1.02483 0.99170 1.22599 1.01984 0.89588 0.99519 0.88183 0.93613 0.93260 0.86815 0.92638 0.88292 0.93305 0.96412 0.89423 0.90019 0.93724 0.92086 0.95749 0.92811 0.85889 0.88735 0.92527 0.89236 0.90851 0.96257 0.89609 0.89834 0.91078 0.89264 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.18 71.98 0.66 -1.94 16 2 C 0.00 -0.05 2.32 -11.54 -0.03 -0.07 16 3 C -0.14 -2.47 8.95 71.98 0.64 -1.83 16 4 C 0.19 5.93 5.42 137.64 0.75 6.67 16 5 N -0.33 -13.82 12.15 -49.54 -0.60 -14.42 16 6 N -0.36 -17.59 9.05 -58.00 -0.52 -18.12 16 7 C 0.36 15.59 6.67 260.11 1.74 17.33 16 8 N -0.46 -20.56 4.78 -711.00 -3.40 -23.96 16 9 C 0.04 1.57 8.16 127.69 1.04 2.61 16 10 C 0.24 13.25 2.05 44.17 0.09 13.34 16 11 H 0.00 0.01 8.08 -2.39 -0.02 -0.01 16 12 C -0.16 -8.52 8.28 71.98 0.60 -7.93 16 13 C -0.53 -28.95 7.77 25.60 0.20 -28.75 16 14 H 0.07 3.67 6.84 -2.91 -0.02 3.65 16 15 C 0.01 0.74 5.30 84.65 0.45 1.19 16 16 N -0.92 -54.71 11.32 21.45 0.24 -54.46 16 17 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 N -0.47 -15.47 2.69 -514.87 -1.38 -16.85 16 22 C 0.11 2.62 4.35 86.38 0.38 3.00 16 23 C 0.07 1.34 1.90 44.91 0.09 1.43 16 24 H 0.03 0.78 5.86 -2.39 -0.01 0.76 16 25 C -0.16 -2.54 7.40 71.98 0.53 -2.01 16 26 N -0.53 -8.77 4.89 -923.28 -4.51 -13.28 16 27 C 0.02 0.27 9.16 127.69 1.17 1.44 16 28 C 0.01 0.19 8.95 127.69 1.14 1.33 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.68 4.87 -2.38 -0.01 1.66 16 33 H 0.05 1.02 6.22 -2.39 -0.01 1.01 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.02 0.70 6.91 -2.39 -0.02 0.68 16 37 H 0.09 3.49 6.25 -2.39 -0.01 3.47 16 38 H 0.08 2.54 3.56 -2.39 -0.01 2.53 16 39 H 0.04 2.44 5.54 -2.39 -0.01 2.43 16 40 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 41 H 0.02 1.23 6.65 -2.39 -0.02 1.22 16 42 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.12 2.27 7.51 -2.39 -0.02 2.25 16 44 H 0.09 2.44 6.01 -2.39 -0.01 2.43 16 45 H 0.06 1.14 3.49 -2.39 -0.01 1.13 16 46 H 0.09 1.10 7.03 -2.39 -0.02 1.09 16 47 H 0.07 1.03 6.38 -2.39 -0.02 1.02 16 48 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 50 H 0.08 0.93 6.27 -2.39 -0.01 0.92 16 51 H 0.07 1.24 6.52 -2.38 -0.02 1.22 16 52 H 0.09 1.17 8.00 -2.39 -0.02 1.16 16 53 H 0.02 0.41 7.09 -2.39 -0.02 0.40 16 Total: -1.00 -72.53 381.96 2.21 -70.32 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.91 Total: 19.59 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 9.44 Total: 5.81 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -10.18 Total: -141.10 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -72.53 2.21 -70.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395792659.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.323 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds