Wall clock time and date at job start Tue Mar 31 2020 14:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47325 * 2 1 4 4 H 1.09004 * 109.46602 * 55.00592 * 3 2 1 5 5 N 1.46892 * 109.47194 * 295.00312 * 3 2 1 6 6 C 1.52999 * 109.47149 * 174.99857 * 3 2 1 7 7 N 1.46502 * 109.46928 * 184.63816 * 6 3 2 8 8 C 1.36454 * 127.13644 * 261.43111 * 7 6 3 9 9 N 1.38581 * 126.47440 * 0.29095 * 8 7 6 10 10 C 1.46903 * 111.00089 * 57.52741 * 9 8 7 11 11 C 1.46898 * 110.99766 * 181.48520 * 9 8 7 12 12 H 1.09003 * 109.46983 * 299.99469 * 11 9 8 13 13 C 1.52996 * 109.47514 * 59.99853 * 11 9 8 14 14 C 1.50705 * 109.46968 * 179.97438 * 11 9 8 15 15 H 1.08002 * 119.99580 * 359.97438 * 14 11 9 16 16 C 1.37873 * 120.00248 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99696 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00111 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47116 * 90.00066 * 18 16 14 20 20 H 1.48502 * 109.47284 * 210.00225 * 18 16 14 21 21 H 1.48498 * 109.47428 * 330.00230 * 18 16 14 22 22 N 1.31222 * 107.05266 * 180.26209 * 8 7 6 23 23 N 1.28529 * 109.86031 * 0.02562 * 22 8 7 24 24 C 1.30301 * 110.05231 * 359.97438 * 23 22 8 25 25 C 1.50700 * 126.34496 * 179.97438 * 24 23 22 26 26 C 1.53008 * 109.46840 * 245.84049 * 25 24 23 27 27 C 1.53000 * 109.46986 * 5.83743 * 25 24 23 28 28 C 1.52996 * 109.47245 * 125.83956 * 25 24 23 29 29 H 1.09001 * 109.47037 * 59.99695 * 1 2 3 30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 299.99657 * 1 2 3 32 32 H 1.09000 * 109.46959 * 240.00343 * 2 1 3 33 33 H 1.08994 * 109.47329 * 120.00080 * 2 1 3 34 34 H 1.00901 * 111.00171 * 316.38347 * 5 3 2 35 35 H 1.00903 * 111.00257 * 80.33996 * 5 3 2 36 36 H 1.09004 * 109.46888 * 64.64263 * 6 3 2 37 37 H 1.08997 * 109.47186 * 304.64079 * 6 3 2 38 38 H 1.08996 * 109.46812 * 36.16490 * 10 9 8 39 39 H 1.08993 * 109.46987 * 156.16525 * 10 9 8 40 40 H 1.09003 * 109.47001 * 276.16373 * 10 9 8 41 41 H 1.09004 * 109.46875 * 299.99370 * 13 11 9 42 42 H 1.08996 * 109.46957 * 59.99763 * 13 11 9 43 43 H 1.09003 * 109.47449 * 180.02562 * 13 11 9 44 44 H 0.97002 * 120.00006 * 180.02562 * 17 16 14 45 45 H 1.09004 * 109.46806 * 64.86859 * 26 25 24 46 46 H 1.08995 * 109.46647 * 184.86961 * 26 25 24 47 47 H 1.08993 * 109.46603 * 304.86770 * 26 25 24 48 48 H 1.08995 * 109.47325 * 60.00211 * 27 25 24 49 49 H 1.09000 * 109.46937 * 180.02562 * 27 25 24 50 50 H 1.09002 * 109.47564 * 299.99830 * 27 25 24 51 51 H 1.09000 * 109.47099 * 79.66291 * 28 25 24 52 52 H 1.09005 * 109.47029 * 199.66505 * 28 25 24 53 53 H 1.09002 * 109.47005 * 319.65931 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0993 -1.2551 6 6 3.5649 1.4443 0.1258 7 7 4.0440 2.8243 0.2372 8 6 4.5543 3.6022 -0.7610 9 7 4.7155 3.2383 -2.0884 10 6 3.4355 2.8279 -2.6810 11 6 5.3290 4.3262 -2.8617 12 1 4.6910 5.2088 -2.8164 13 6 6.7019 4.6586 -2.2739 14 6 5.4887 3.8944 -4.2967 15 1 5.1670 2.9101 -4.6034 16 6 6.0454 4.7559 -5.2181 17 7 6.4376 5.9543 -4.8444 18 14 6.2440 4.2204 -6.9965 19 1 5.0251 4.5852 -7.7624 20 1 7.4233 4.9006 -7.5896 21 1 6.4414 2.7496 -7.0516 22 7 4.8629 4.7604 -0.2267 23 7 4.5804 4.7519 1.0271 24 6 4.0786 3.5976 1.3643 25 6 3.6218 3.1902 2.7414 26 6 4.5250 2.0735 3.2687 27 6 3.6986 4.3950 3.6813 28 6 2.1780 2.6886 2.6722 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8060 1.4905 -2.0448 35 1 0.6916 2.4085 -1.2194 36 1 4.0028 0.9778 -0.7568 37 1 3.8568 0.8854 1.0148 38 1 2.6331 3.4435 -2.2746 39 1 3.4786 2.9549 -3.7627 40 1 3.2452 1.7808 -2.4455 41 1 6.5868 4.9708 -1.2360 42 1 7.3398 3.7760 -2.3193 43 1 7.1569 5.4662 -2.8475 44 1 6.8289 6.5606 -5.4927 45 1 5.5372 2.4563 3.3998 46 1 4.1435 1.7194 4.2263 47 1 4.5378 1.2494 2.5555 48 1 3.0552 5.1906 3.3057 49 1 3.3687 4.1002 4.6775 50 1 4.7272 4.7524 3.7307 51 1 2.1673 1.6617 2.3071 52 1 1.7325 2.7256 3.6664 53 1 1.6056 3.3214 1.9939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577147616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:28 Heat of formation + Delta-G solvation = 118.184292 kcal Electronic energy + Delta-G solvation = -30634.713705 eV Core-core repulsion = 26965.569907 eV Total energy + Delta-G solvation = -3669.143798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.238 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37872 -38.06263 -37.39210 -36.09329 -33.80371 -32.62585 -31.22543 -29.24632 -28.85256 -28.10969 -27.57264 -27.22391 -25.43611 -24.52397 -23.57715 -22.16069 -21.40893 -20.91698 -19.39440 -18.84255 -16.82904 -16.51499 -15.92150 -15.63154 -15.50775 -15.06991 -14.75451 -14.60751 -14.32943 -14.07203 -13.90310 -13.78410 -13.15278 -13.12342 -12.82786 -12.63084 -12.26670 -12.21431 -12.16670 -11.94131 -11.76161 -11.70544 -11.47189 -11.37253 -11.24393 -11.05392 -10.93722 -10.88766 -10.75481 -10.59575 -10.22880 -10.15026 -9.98752 -9.93365 -9.67579 -9.32444 -9.07100 -8.51741 -8.35171 -8.31799 -7.05080 -5.95360 -4.02139 2.52178 2.90845 3.32102 3.39023 3.41715 3.67874 4.24935 4.33681 4.41434 4.49472 4.64703 4.71820 4.75413 4.86076 4.92119 4.96215 5.16224 5.20083 5.24000 5.33236 5.35447 5.38937 5.49227 5.52371 5.56910 5.59077 5.70890 5.77210 5.80676 5.85152 5.88600 5.95983 6.05516 6.14933 6.20731 6.37071 6.42841 6.56447 6.73444 6.89827 6.99888 7.15847 7.19143 7.28000 7.40861 7.54723 7.65440 7.84854 7.95151 8.15871 8.41092 8.65057 9.00246 9.60408 9.67406 11.10682 Molecular weight = 323.24amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.004386 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.561416 B = 6382.370518 C = 7860.989755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.046 3.954 4 H 0.106 0.894 5 N -0.829 5.829 6 C 0.119 3.881 7 N -0.471 5.471 8 C 0.404 3.596 9 N -0.459 5.459 10 C 0.033 3.967 11 C 0.232 3.768 12 H 0.018 0.982 13 C -0.142 4.142 14 C -0.513 4.513 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.883 5.883 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 N -0.327 5.327 23 N -0.286 5.286 24 C 0.148 3.852 25 C 0.031 3.969 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.152 4.152 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.348 0.652 35 H 0.334 0.666 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.020 0.980 43 H 0.084 0.916 44 H 0.261 0.739 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.065 0.935 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 -13.216 14.708 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C -0.066 4.066 4 H 0.124 0.876 5 N -0.363 5.363 6 C -0.006 4.006 7 N -0.166 5.166 8 C 0.049 3.951 9 N -0.183 5.183 10 C -0.114 4.114 11 C 0.128 3.872 12 H 0.036 0.964 13 C -0.200 4.200 14 C -0.552 4.552 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.725 3.275 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 N -0.172 5.172 23 N -0.124 5.124 24 C -0.120 4.120 25 C 0.028 3.972 26 C -0.202 4.202 27 C -0.185 4.185 28 C -0.210 4.210 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.084 0.916 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.889 -11.477 14.806 21.668 hybrid contribution -1.322 -1.991 -1.381 2.760 sum -12.211 -13.468 13.425 22.599 Atomic orbital electron populations 1.21758 0.95303 1.01949 1.01915 1.22264 0.96646 0.97687 1.02893 1.22480 0.94892 0.93612 0.95655 0.87603 1.60230 1.27890 1.44404 1.03744 1.21883 0.94255 0.80673 1.03795 1.45787 1.50069 1.12990 1.07786 1.23109 0.95026 0.86363 0.90628 1.58992 1.23299 1.40688 0.95317 1.23142 0.88142 0.99112 1.01040 1.19274 0.92220 0.85522 0.90175 0.96416 1.21947 0.97732 1.00747 0.99618 1.21074 1.41303 1.00736 0.92074 0.91902 1.24889 0.95355 0.94898 0.98769 1.69940 1.41178 1.06784 1.34191 0.86523 0.77595 0.78635 0.84750 1.20783 1.21226 1.19957 1.74820 1.25721 1.15603 1.01052 1.73890 1.14191 1.17076 1.07251 1.24133 1.07615 0.90307 0.89959 1.18775 0.94713 0.96562 0.87111 1.22004 1.00072 0.97418 1.00735 1.21680 1.03487 0.96409 0.96919 1.22335 0.95246 1.01012 1.02380 0.92741 0.92450 0.92568 0.91448 0.91340 0.83380 0.85252 0.88572 0.89498 0.91646 0.90160 0.93206 0.93775 0.96124 0.89778 0.92881 0.91874 0.91666 0.92775 0.91891 0.92474 0.91543 0.91759 0.91606 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.73 37.16 0.36 -0.57 16 2 C -0.15 -1.07 5.44 -26.73 -0.15 -1.21 16 3 C 0.05 0.43 2.28 -67.71 -0.15 0.28 16 4 H 0.11 1.00 3.65 -51.93 -0.19 0.82 16 5 N -0.83 -8.69 4.71 -4.67 -0.02 -8.71 16 6 C 0.12 1.43 4.32 -4.04 -0.02 1.42 16 7 N -0.47 -7.85 2.73 -114.08 -0.31 -8.16 16 8 C 0.40 8.72 6.53 -318.87 -2.08 6.64 16 9 N -0.46 -10.29 4.61 -176.08 -0.81 -11.10 16 10 C 0.03 0.61 7.08 60.07 0.43 1.03 16 11 C 0.23 6.20 1.72 -68.87 -0.12 6.08 16 12 H 0.02 0.54 8.10 -51.93 -0.42 0.12 16 13 C -0.14 -3.89 8.77 37.16 0.33 -3.56 16 14 C -0.51 -14.07 7.52 -34.44 -0.26 -14.33 16 15 H 0.06 1.67 6.74 -52.49 -0.35 1.32 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.86 11.32 55.43 0.63 -25.24 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 N -0.33 -7.89 9.06 30.32 0.27 -7.61 16 23 N -0.29 -6.07 11.51 32.99 0.38 -5.69 16 24 C 0.15 2.48 6.25 -154.01 -0.96 1.51 16 25 C 0.03 0.37 0.81 -155.66 -0.13 0.24 16 26 C -0.14 -1.44 8.33 37.16 0.31 -1.13 16 27 C -0.13 -1.45 7.90 37.16 0.29 -1.16 16 28 C -0.15 -1.40 6.80 37.16 0.25 -1.15 16 29 H 0.05 0.34 7.31 -51.93 -0.38 -0.04 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.35 3.42 6.26 -39.29 -0.25 3.17 16 35 H 0.33 3.05 8.37 -39.29 -0.33 2.72 16 36 H 0.10 1.27 6.87 -51.93 -0.36 0.91 16 37 H 0.09 0.87 5.37 -51.93 -0.28 0.59 16 38 H 0.07 1.22 5.94 -51.93 -0.31 0.91 16 39 H 0.08 1.64 5.82 -51.93 -0.30 1.34 16 40 H 0.05 0.75 4.20 -51.93 -0.22 0.53 16 41 H 0.04 1.20 5.48 -51.93 -0.28 0.91 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 2.47 6.07 -51.93 -0.32 2.16 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.52 5.59 -51.93 -0.29 0.23 16 48 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.51 5.28 -51.93 -0.27 0.23 16 52 H 0.06 0.48 7.98 -51.93 -0.41 0.07 16 53 H 0.06 0.68 7.07 -51.93 -0.37 0.31 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -33.08 379.30 -9.84 -42.92 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.69 Total: 5.86 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.99 Total: -4.24 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.14 Total: -66.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.08 -9.84 -42.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577147616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.109 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds