Wall clock time and date at job start Tue Mar 31 2020 14:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47325 * 2 1 4 4 H 1.09004 * 109.46602 * 55.00592 * 3 2 1 5 5 N 1.46892 * 109.47194 * 295.00312 * 3 2 1 6 6 C 1.52999 * 109.47149 * 174.99857 * 3 2 1 7 7 N 1.46502 * 109.46928 * 184.63816 * 6 3 2 8 8 C 1.36454 * 127.13644 * 261.43111 * 7 6 3 9 9 N 1.38581 * 126.47440 * 0.29095 * 8 7 6 10 10 C 1.46903 * 111.00089 * 57.52741 * 9 8 7 11 11 C 1.46898 * 110.99766 * 181.48520 * 9 8 7 12 12 H 1.09003 * 109.46983 * 299.99469 * 11 9 8 13 13 C 1.52996 * 109.47514 * 59.99853 * 11 9 8 14 14 C 1.50705 * 109.46968 * 179.97438 * 11 9 8 15 15 H 1.08002 * 119.99580 * 359.97438 * 14 11 9 16 16 C 1.37873 * 120.00248 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99696 * 0.02562 * 16 14 11 18 18 Si 1.86795 * 120.00111 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47116 * 90.00066 * 18 16 14 20 20 H 1.48502 * 109.47284 * 210.00225 * 18 16 14 21 21 H 1.48498 * 109.47428 * 330.00230 * 18 16 14 22 22 N 1.31222 * 107.05266 * 180.26209 * 8 7 6 23 23 N 1.28529 * 109.86031 * 0.02562 * 22 8 7 24 24 C 1.30301 * 110.05231 * 359.97438 * 23 22 8 25 25 C 1.50700 * 126.34496 * 179.97438 * 24 23 22 26 26 C 1.53008 * 109.46840 * 245.84049 * 25 24 23 27 27 C 1.53000 * 109.46986 * 5.83743 * 25 24 23 28 28 C 1.52996 * 109.47245 * 125.83956 * 25 24 23 29 29 H 1.09001 * 109.47037 * 59.99695 * 1 2 3 30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46959 * 299.99657 * 1 2 3 32 32 H 1.09000 * 109.46959 * 240.00343 * 2 1 3 33 33 H 1.08994 * 109.47329 * 120.00080 * 2 1 3 34 34 H 1.00901 * 111.00171 * 316.38347 * 5 3 2 35 35 H 1.00903 * 111.00257 * 80.33996 * 5 3 2 36 36 H 1.09004 * 109.46888 * 64.64263 * 6 3 2 37 37 H 1.08997 * 109.47186 * 304.64079 * 6 3 2 38 38 H 1.08996 * 109.46812 * 36.16490 * 10 9 8 39 39 H 1.08993 * 109.46987 * 156.16525 * 10 9 8 40 40 H 1.09003 * 109.47001 * 276.16373 * 10 9 8 41 41 H 1.09004 * 109.46875 * 299.99370 * 13 11 9 42 42 H 1.08996 * 109.46957 * 59.99763 * 13 11 9 43 43 H 1.09003 * 109.47449 * 180.02562 * 13 11 9 44 44 H 0.97002 * 120.00006 * 180.02562 * 17 16 14 45 45 H 1.09004 * 109.46806 * 64.86859 * 26 25 24 46 46 H 1.08995 * 109.46647 * 184.86961 * 26 25 24 47 47 H 1.08993 * 109.46603 * 304.86770 * 26 25 24 48 48 H 1.08995 * 109.47325 * 60.00211 * 27 25 24 49 49 H 1.09000 * 109.46937 * 180.02562 * 27 25 24 50 50 H 1.09002 * 109.47564 * 299.99830 * 27 25 24 51 51 H 1.09000 * 109.47099 * 79.66291 * 28 25 24 52 52 H 1.09005 * 109.47029 * 199.66505 * 28 25 24 53 53 H 1.09002 * 109.47005 * 319.65931 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 7 1.6514 2.0993 -1.2551 6 6 3.5649 1.4443 0.1258 7 7 4.0440 2.8243 0.2372 8 6 4.5543 3.6022 -0.7610 9 7 4.7155 3.2383 -2.0884 10 6 3.4355 2.8279 -2.6810 11 6 5.3290 4.3262 -2.8617 12 1 4.6910 5.2088 -2.8164 13 6 6.7019 4.6586 -2.2739 14 6 5.4887 3.8944 -4.2967 15 1 5.1670 2.9101 -4.6034 16 6 6.0454 4.7559 -5.2181 17 7 6.4376 5.9543 -4.8444 18 14 6.2440 4.2204 -6.9965 19 1 5.0251 4.5852 -7.7624 20 1 7.4233 4.9006 -7.5896 21 1 6.4414 2.7496 -7.0516 22 7 4.8629 4.7604 -0.2267 23 7 4.5804 4.7519 1.0271 24 6 4.0786 3.5976 1.3643 25 6 3.6218 3.1902 2.7414 26 6 4.5250 2.0735 3.2687 27 6 3.6986 4.3950 3.6813 28 6 2.1780 2.6886 2.6722 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8060 1.4905 -2.0448 35 1 0.6916 2.4085 -1.2194 36 1 4.0028 0.9778 -0.7568 37 1 3.8568 0.8854 1.0148 38 1 2.6331 3.4435 -2.2746 39 1 3.4786 2.9549 -3.7627 40 1 3.2452 1.7808 -2.4455 41 1 6.5868 4.9708 -1.2360 42 1 7.3398 3.7760 -2.3193 43 1 7.1569 5.4662 -2.8475 44 1 6.8289 6.5606 -5.4927 45 1 5.5372 2.4563 3.3998 46 1 4.1435 1.7194 4.2263 47 1 4.5378 1.2494 2.5555 48 1 3.0552 5.1906 3.3057 49 1 3.3687 4.1002 4.6775 50 1 4.7272 4.7524 3.7307 51 1 2.1673 1.6617 2.3071 52 1 1.7325 2.7256 3.6664 53 1 1.6056 3.3214 1.9939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577147616.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:27 Heat of formation + Delta-G solvation = 97.560142 kcal Electronic energy + Delta-G solvation = -30635.608035 eV Core-core repulsion = 26965.569907 eV Total energy + Delta-G solvation = -3670.038128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.238 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.85138 -39.01036 -38.92383 -37.28392 -35.15459 -34.53843 -32.02428 -31.05883 -30.38627 -29.25195 -28.35025 -28.13745 -27.33851 -26.14456 -24.58348 -23.57865 -23.06955 -21.68748 -21.03141 -20.03174 -18.42267 -17.86130 -17.27738 -17.09592 -16.91636 -16.45463 -16.08307 -15.74875 -15.32997 -15.14683 -14.87299 -14.85685 -14.71457 -14.32982 -14.09626 -13.76341 -13.55105 -13.40158 -13.04246 -12.94839 -12.87103 -12.77145 -12.72735 -12.68634 -12.48344 -12.33913 -12.26170 -12.17197 -12.03711 -11.98790 -11.93903 -11.79422 -11.68147 -11.29204 -11.19814 -10.93219 -10.75572 -10.50503 -10.25932 -9.30424 -8.76112 -8.09542 -6.24633 1.10373 1.43447 1.46101 1.54946 1.58916 2.11516 2.43471 3.12855 3.23447 3.34701 3.45321 3.76347 3.83636 3.95920 4.01436 4.08387 4.17006 4.22600 4.33293 4.40154 4.54156 4.60954 4.67596 4.75031 4.78756 4.82454 4.83119 4.87385 4.94552 4.97709 4.98459 5.02579 5.11199 5.13127 5.14577 5.19481 5.23722 5.26125 5.36398 5.37486 5.39245 5.43714 5.50557 5.51868 5.69893 5.73622 6.08198 6.19488 6.23071 6.28566 6.53274 6.78365 6.86834 7.43450 8.11424 8.97295 Molecular weight = 323.24amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.004386 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.561416 B = 6382.370518 C = 7860.989755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.054 3.946 4 H 0.110 0.890 5 N -0.850 5.850 6 C 0.106 3.894 7 N -0.458 5.458 8 C 0.383 3.617 9 N -0.461 5.461 10 C 0.041 3.959 11 C 0.247 3.753 12 H -0.032 1.032 13 C -0.125 4.125 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.010 3.990 17 N -0.920 5.920 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.262 1.262 22 N -0.382 5.382 23 N -0.336 5.336 24 C 0.176 3.824 25 C 0.027 3.973 26 C -0.141 4.141 27 C -0.126 4.126 28 C -0.146 4.146 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.343 0.657 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.016 0.984 43 H 0.058 0.942 44 H 0.262 0.738 45 H 0.044 0.956 46 H 0.102 0.898 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.095 0.905 50 H 0.044 0.956 51 H 0.083 0.917 52 H 0.096 0.904 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 -16.921 16.111 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.058 4.058 4 H 0.127 0.873 5 N -0.385 5.385 6 C -0.016 4.016 7 N -0.152 5.152 8 C 0.025 3.975 9 N -0.185 5.185 10 C -0.105 4.105 11 C 0.141 3.859 12 H -0.015 1.015 13 C -0.184 4.184 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.189 4.189 17 N -0.559 5.559 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.186 1.186 22 N -0.226 5.226 23 N -0.173 5.173 24 C -0.094 4.094 25 C 0.024 3.976 26 C -0.199 4.199 27 C -0.184 4.184 28 C -0.203 4.203 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.121 0.879 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.114 0.886 50 H 0.063 0.937 51 H 0.102 0.898 52 H 0.114 0.886 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.862 -15.221 16.233 25.703 hybrid contribution -0.785 -0.843 -1.645 2.008 sum -13.647 -16.063 14.588 25.634 Atomic orbital electron populations 1.21745 0.94581 1.02463 1.01980 1.22168 0.97086 0.95452 1.03761 1.22428 0.92640 0.95529 0.95159 0.87292 1.60044 1.28826 1.45164 1.04501 1.22382 0.96222 0.78088 1.04916 1.45958 1.48799 1.14206 1.06277 1.22964 0.96579 0.87073 0.90847 1.58974 1.25108 1.38658 0.95719 1.23255 0.86553 1.01298 0.99392 1.18838 0.90910 0.85208 0.90982 1.01454 1.21741 0.98257 0.99446 0.98962 1.21348 1.41158 1.01093 0.92505 0.91010 1.25826 0.94839 0.94752 1.03501 1.70111 1.41981 1.08092 1.35746 0.85369 0.77575 0.78669 0.78855 1.19841 1.21273 1.18649 1.74641 1.27363 1.17891 1.02696 1.73790 1.17250 1.19888 1.06411 1.25262 1.03740 0.88759 0.91655 1.19179 0.97019 0.97530 0.83853 1.22007 0.98725 0.96442 1.02695 1.21696 1.01915 0.95915 0.98828 1.22312 0.92629 1.01414 1.03975 0.93138 0.91692 0.92143 0.91445 0.89649 0.83147 0.84221 0.89398 0.86567 0.91816 0.92240 0.89242 0.94186 0.96436 0.92359 0.92923 0.93667 0.87920 0.92150 0.93704 0.88599 0.93699 0.89830 0.88555 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.73 71.98 0.70 -0.60 16 2 C -0.14 -1.42 5.44 30.60 0.17 -1.25 16 3 C 0.05 0.86 2.28 44.92 0.10 0.96 16 4 H 0.11 1.70 3.65 -2.38 -0.01 1.69 16 5 N -0.85 -16.43 4.71 -168.68 -0.79 -17.23 16 6 C 0.11 2.31 4.32 86.38 0.37 2.68 16 7 N -0.46 -15.05 2.73 -514.84 -1.40 -16.45 16 8 C 0.38 17.08 6.53 260.11 1.70 18.78 16 9 N -0.46 -21.30 4.61 -711.00 -3.28 -24.58 16 10 C 0.04 1.55 7.08 127.69 0.90 2.46 16 11 C 0.25 13.87 1.72 44.17 0.08 13.95 16 12 H -0.03 -2.10 8.10 -2.39 -0.02 -2.12 16 13 C -0.13 -7.30 8.77 71.98 0.63 -6.67 16 14 C -0.52 -29.46 7.52 25.60 0.19 -29.26 16 15 H 0.07 3.84 6.74 -2.91 -0.02 3.82 16 16 C 0.01 0.56 5.30 84.65 0.45 1.01 16 17 N -0.92 -56.16 11.32 21.45 0.24 -55.92 16 18 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 22 N -0.38 -19.49 9.06 -58.00 -0.53 -20.02 16 23 N -0.34 -14.93 11.51 -49.54 -0.57 -15.50 16 24 C 0.18 5.84 6.25 137.64 0.86 6.70 16 25 C 0.03 0.57 0.81 -52.93 -0.04 0.53 16 26 C -0.14 -2.29 8.33 71.98 0.60 -1.69 16 27 C -0.13 -2.68 7.90 71.98 0.57 -2.11 16 28 C -0.15 -2.10 6.80 71.98 0.49 -1.61 16 29 H 0.05 0.48 7.31 -2.39 -0.02 0.47 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.70 8.07 -2.39 -0.02 0.68 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.35 6.21 6.26 -89.69 -0.56 5.65 16 35 H 0.34 5.72 8.37 -89.69 -0.75 4.97 16 36 H 0.09 2.11 6.87 -2.38 -0.02 2.09 16 37 H 0.12 1.85 5.37 -2.39 -0.01 1.84 16 38 H 0.06 2.42 5.94 -2.39 -0.01 2.40 16 39 H 0.06 2.47 5.82 -2.39 -0.01 2.45 16 40 H 0.09 2.60 4.20 -2.39 -0.01 2.59 16 41 H 0.04 2.32 5.48 -2.38 -0.01 2.31 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.06 0.91 5.59 -2.39 -0.01 0.89 16 48 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.10 1.29 8.13 -2.39 -0.02 1.27 16 50 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 0.89 5.28 -2.39 -0.01 0.87 16 52 H 0.10 0.88 7.98 -2.38 -0.02 0.86 16 53 H 0.04 0.84 7.07 -2.39 -0.02 0.82 16 Total: -1.00 -78.85 379.30 3.09 -75.77 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.38 Total: 23.89 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 7.77 Total: 3.87 kcal Atomic # 7 Polarization: -143.37 SS G_CDS: -6.33 Total: -149.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -78.85 3.09 -75.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577147616.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.327 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds