Wall clock time and date at job start Tue Mar 31 2020 13:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46891 * 110.99731 * 2 1 4 4 C 1.46896 * 110.99869 * 123.95273 * 2 1 3 5 5 C 1.52998 * 109.47267 * 68.91383 * 4 2 1 6 6 C 1.50704 * 115.55273 * 60.43700 * 5 4 2 7 7 O 1.21272 * 120.00538 * 247.54010 * 6 5 4 8 8 N 1.34787 * 119.99465 * 67.53511 * 6 5 4 9 9 C 1.46922 * 120.63156 * 355.02423 * 8 6 5 10 10 C 1.53199 * 108.89058 * 126.34098 * 9 8 6 11 11 C 1.53346 * 109.14715 * 54.58339 * 10 9 8 12 12 C 1.53048 * 109.60543 * 298.70542 * 11 10 9 13 13 C 1.46927 * 120.62898 * 175.04956 * 8 6 5 14 14 H 1.08995 * 109.58621 * 113.65189 * 13 8 6 15 15 C 1.53001 * 109.58394 * 353.37043 * 13 8 6 16 16 C 1.53005 * 109.47053 * 180.72836 * 15 13 8 17 17 N 1.46494 * 109.47405 * 185.34545 * 16 15 13 18 18 C 1.36936 * 120.00225 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99936 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00027 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00430 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99694 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47241 * 59.99942 * 22 20 18 24 24 H 1.48503 * 109.47191 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47277 * 299.99284 * 22 20 18 26 26 C 1.53001 * 117.50029 * 206.11046 * 5 4 2 27 27 C 1.53001 * 117.50111 * 274.77141 * 5 4 2 28 28 H 1.08996 * 109.47164 * 298.61981 * 1 2 3 29 29 H 1.08992 * 109.46926 * 58.62878 * 1 2 3 30 30 H 1.08999 * 109.46622 * 178.62164 * 1 2 3 31 31 H 1.09003 * 109.47472 * 183.95358 * 3 2 1 32 32 H 1.09004 * 109.47423 * 303.95451 * 3 2 1 33 33 H 1.08998 * 109.47631 * 63.95450 * 3 2 1 34 34 H 1.09002 * 109.47660 * 308.91528 * 4 2 1 35 35 H 1.08998 * 109.47426 * 188.91195 * 4 2 1 36 36 H 1.09000 * 109.59237 * 246.20323 * 9 8 6 37 37 H 1.09008 * 109.58877 * 6.48816 * 9 8 6 38 38 H 1.09001 * 109.49157 * 174.66076 * 10 9 8 39 39 H 1.08995 * 109.49613 * 294.75286 * 10 9 8 40 40 H 1.08998 * 109.41661 * 178.67813 * 11 10 9 41 41 H 1.08994 * 109.43520 * 58.75455 * 11 10 9 42 42 H 1.08995 * 109.50106 * 301.43107 * 12 11 10 43 43 H 1.08997 * 109.52768 * 181.34117 * 12 11 10 44 44 H 1.08995 * 109.47822 * 300.73335 * 15 13 8 45 45 H 1.09004 * 109.46855 * 60.73514 * 15 13 8 46 46 H 1.08996 * 109.47352 * 305.34881 * 16 15 13 47 47 H 1.09006 * 109.46157 * 65.34500 * 16 15 13 48 48 H 0.97007 * 120.00025 * 0.02562 * 17 16 15 49 49 H 0.96989 * 120.00232 * 179.97438 * 21 20 18 50 50 H 1.09007 * 117.49895 * 214.99882 * 26 5 4 51 51 H 1.08996 * 117.50038 * 0.02804 * 26 5 4 52 52 H 1.09007 * 117.49581 * 359.97438 * 27 5 4 53 53 H 1.08998 * 117.50401 * 144.97227 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6938 -2.2521 0.9351 6 6 2.2940 -2.8751 -0.2989 7 8 1.5746 -3.2481 -1.2012 8 7 3.6305 -3.0176 -0.3998 9 6 4.5215 -2.4735 0.6339 10 6 5.4403 -3.5920 1.1356 11 6 6.1685 -4.2188 -0.0595 12 6 5.1460 -4.8257 -1.0231 13 6 4.2240 -3.7196 -1.5460 14 1 4.7989 -3.0157 -2.1477 15 6 3.1147 -4.3374 -2.3995 16 6 3.7364 -5.0830 -3.5821 17 7 2.6742 -5.5657 -4.4680 18 6 2.9929 -6.2665 -5.6005 19 1 4.0273 -6.4638 -5.8403 20 6 1.9865 -6.7234 -6.4402 21 7 0.7258 -6.4834 -6.1478 22 14 2.4212 -7.6800 -7.9847 23 1 3.1638 -8.9108 -7.6120 24 1 1.1762 -8.0522 -8.7033 25 1 3.2692 -6.8380 -8.8662 26 6 1.5823 -3.1271 2.1853 27 6 0.3256 -2.7637 1.3905 28 1 -0.3633 0.4922 0.9021 29 1 -0.3633 0.5349 -0.8774 30 1 -0.3632 -1.0274 -0.0247 31 1 3.0828 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9232 34 1 1.5231 -0.4214 2.0575 35 1 3.0735 -0.6202 1.2061 36 1 5.1228 -1.6685 0.2114 37 1 3.9274 -2.0892 1.4632 38 1 6.1685 -3.1789 1.8337 39 1 4.8449 -4.3538 1.6387 40 1 6.8413 -4.9997 0.2950 41 1 6.7440 -3.4512 -0.5768 42 1 4.5535 -5.5760 -0.4997 43 1 5.6660 -5.2916 -1.8601 44 1 2.5360 -5.0349 -1.7939 45 1 2.4601 -3.5489 -2.7707 46 1 4.3908 -4.4081 -4.1336 47 1 4.3152 -5.9300 -3.2137 48 1 1.7451 -5.3888 -4.2525 49 1 0.0226 -6.8024 -6.7347 50 1 1.9432 -4.1533 2.1152 51 1 1.7235 -2.6439 3.1520 52 1 -0.3594 -2.0415 1.8347 53 1 -0.1405 -3.5505 0.7973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753784692.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:18 Heat of formation + Delta-G solvation = -1.315510 kcal Electronic energy + Delta-G solvation = -29555.245340 eV Core-core repulsion = 25848.626890 eV Total energy + Delta-G solvation = -3706.618449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 323.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85221 -39.45997 -38.11748 -36.99043 -36.54415 -34.44568 -33.68611 -32.38655 -29.31483 -29.00646 -28.45390 -26.75585 -25.40058 -24.75865 -23.47959 -23.38803 -22.78992 -22.06464 -21.21305 -19.51439 -19.09102 -17.64239 -17.24615 -16.69435 -16.59365 -16.20368 -16.00291 -15.91931 -15.52519 -15.45881 -15.30474 -15.07082 -14.90708 -14.64737 -14.31406 -14.23571 -13.78050 -13.44668 -13.33049 -13.24268 -12.99119 -12.91981 -12.82839 -12.68113 -12.63724 -12.50679 -12.38883 -12.29111 -12.14580 -11.91340 -11.85427 -11.75869 -11.48423 -11.40340 -11.24465 -11.02771 -10.93183 -9.90753 -9.45397 -9.23047 -9.02873 -7.95295 -5.26753 1.43603 1.49513 1.55654 1.75936 2.01896 2.54965 2.60123 3.13003 3.36455 3.48043 3.68564 3.80227 3.85008 3.88435 3.95443 4.08821 4.11807 4.16133 4.27879 4.28542 4.38870 4.44780 4.50065 4.52456 4.56090 4.61252 4.69212 4.71160 4.71721 4.76319 4.79197 4.83069 4.88382 4.93206 4.96242 5.02089 5.02478 5.08240 5.14674 5.18147 5.18865 5.26075 5.38101 5.41808 5.51514 5.52187 5.79008 6.07792 6.13880 6.25190 6.60079 7.29393 7.41684 8.06218 8.31404 9.28848 Molecular weight = 323.23amu Principal moments of inertia in cm(-1) A = 0.012949 B = 0.003414 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.742887 B = 8199.203353 C = 9368.028387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.573 5.573 3 C 0.029 3.971 4 C 0.099 3.901 5 C -0.157 4.157 6 C 0.551 3.449 7 O -0.572 6.572 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.129 4.129 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.159 3.841 14 H 0.072 0.928 15 C -0.091 4.091 16 C 0.150 3.850 17 N -0.749 5.749 18 C -0.252 4.252 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.974 5.974 22 Si 0.983 3.017 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.274 1.274 26 C -0.130 4.130 27 C -0.158 4.158 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.024 0.976 48 H 0.369 0.631 49 H 0.252 0.748 50 H 0.091 0.909 51 H 0.140 0.860 52 H 0.120 0.880 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 15.767 26.418 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.297 5.297 3 C -0.119 4.119 4 C -0.029 4.029 5 C -0.160 4.160 6 C 0.340 3.660 7 O -0.451 6.451 8 N -0.335 5.335 9 C -0.020 4.020 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.166 4.166 13 C 0.055 3.945 14 H 0.090 0.910 15 C -0.129 4.129 16 C 0.023 3.977 17 N -0.391 5.391 18 C -0.383 4.383 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.625 5.625 22 Si 0.811 3.189 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.200 1.200 26 C -0.168 4.168 27 C -0.196 4.196 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.041 0.959 48 H 0.200 0.800 49 H 0.060 0.940 50 H 0.109 0.891 51 H 0.158 0.842 52 H 0.138 0.862 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.487 15.290 25.396 31.125 hybrid contribution -1.079 -0.353 -0.786 1.380 sum 8.409 14.937 24.610 29.991 Atomic orbital electron populations 1.22414 0.87139 1.02060 1.00640 1.61780 1.08719 1.15074 1.44104 1.22370 1.00972 0.87535 1.01027 1.21789 1.01507 0.87585 0.92016 1.21390 1.03269 0.96582 0.94797 1.19977 0.81833 0.76961 0.87238 1.90806 1.62122 1.51256 1.40912 1.48104 1.05490 1.56111 1.23818 1.22135 0.92685 0.96546 0.90637 1.21984 0.98946 0.97961 0.97787 1.21573 0.96953 1.00810 0.95903 1.21984 0.97516 0.96948 1.00147 1.21074 0.93355 0.93728 0.86358 0.90974 1.21893 0.96668 0.99040 0.95261 1.20957 0.90827 0.95248 0.90682 1.42644 1.04885 1.66008 1.25560 1.19692 0.93041 1.26114 0.99485 0.90334 1.25742 0.95051 1.03384 1.03082 1.69880 0.99389 1.52847 1.40361 0.85074 0.76503 0.78577 0.78765 1.19961 1.21923 1.20025 1.23222 0.99461 0.99562 0.94529 1.23036 0.90717 1.03254 1.02566 0.93896 0.92434 0.92164 0.90725 0.91928 0.94088 0.91479 0.88277 0.90380 0.87535 0.87655 0.92006 0.90445 0.90909 0.93025 0.91018 0.94465 0.92022 0.96543 0.95851 0.80030 0.93971 0.89096 0.84203 0.86210 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.08 127.69 1.16 1.69 16 2 N -0.57 -11.86 4.81 -948.87 -4.57 -16.42 16 3 C 0.03 0.43 9.55 127.69 1.22 1.65 16 4 C 0.10 1.53 4.43 86.30 0.38 1.91 16 5 C -0.16 -3.22 0.60 -52.93 -0.03 -3.25 16 6 C 0.55 16.91 6.63 87.66 0.58 17.49 16 7 O -0.57 -24.56 12.29 -3.00 -0.04 -24.60 16 8 N -0.60 -15.50 2.97 -795.00 -2.36 -17.87 16 9 C 0.10 1.51 5.52 86.37 0.48 1.98 16 10 C -0.13 -1.58 6.11 30.78 0.19 -1.40 16 11 C -0.11 -1.85 5.89 30.73 0.18 -1.67 16 12 C -0.13 -3.22 4.85 30.68 0.15 -3.07 16 13 C 0.16 4.85 3.02 44.98 0.14 4.98 16 14 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 15 C -0.09 -3.85 3.28 30.60 0.10 -3.75 16 16 C 0.15 7.08 5.75 86.38 0.50 7.58 16 17 N -0.75 -44.60 5.60 -343.46 -1.92 -46.52 16 18 C -0.25 -15.60 9.99 84.03 0.84 -14.76 16 19 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 21 N -0.97 -65.37 13.06 21.65 0.28 -65.09 16 22 Si 0.98 49.23 29.55 68.60 2.03 51.25 16 23 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 26 C -0.13 -1.91 9.54 30.62 0.29 -1.62 16 27 C -0.16 -3.23 7.90 30.62 0.24 -2.99 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.48 5.59 -2.39 -0.01 1.47 16 31 H 0.07 0.99 8.10 -2.39 -0.02 0.98 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 35 H 0.10 1.19 5.66 -2.39 -0.01 1.18 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 1.15 4.40 -2.38 -0.01 1.14 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.91 6.88 -2.39 -0.02 1.90 16 44 H 0.04 1.74 7.30 -2.39 -0.02 1.72 16 45 H 0.06 3.07 6.17 -2.39 -0.01 3.06 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.02 1.07 6.87 -2.38 -0.02 1.05 16 48 H 0.37 23.97 7.67 -92.70 -0.71 23.26 16 49 H 0.25 16.20 8.31 -92.72 -0.77 15.43 16 50 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 51 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.12 1.88 7.65 -2.38 -0.02 1.86 16 53 H 0.07 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -83.14 399.76 0.46 -82.67 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.17 Total: 36.39 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 6.88 Total: 0.18 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -8.57 Total: -145.90 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.04 Total: -24.60 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.25 kcal Total: -83.14 0.46 -82.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753784692.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.357 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds