Wall clock time and date at job start Tue Mar 31 2020 13:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46963 * 2 1 4 4 C 1.50696 * 109.47168 * 240.00036 * 2 1 3 5 5 H 1.08000 * 119.99395 * 239.99667 * 4 2 1 6 6 C 1.37875 * 120.00593 * 59.99718 * 4 2 1 7 7 N 1.31520 * 119.99528 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00328 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47013 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47075 * 119.99913 * 8 6 4 11 11 H 1.48494 * 109.47422 * 240.00364 * 8 6 4 12 12 N 1.46492 * 109.46970 * 119.99536 * 2 1 3 13 13 S 1.65605 * 120.00271 * 263.64157 * 12 2 1 14 14 O 1.42100 * 106.39880 * 312.02118 * 13 12 2 15 15 O 1.42103 * 106.40380 * 179.10294 * 13 12 2 16 16 C 1.76196 * 107.21849 * 65.56105 * 13 12 2 17 17 C 1.38648 * 120.40725 * 244.29346 * 16 13 12 18 18 C 1.38609 * 118.45295 * 179.97438 * 17 16 13 19 19 C 1.38364 * 119.17534 * 0.02562 * 18 17 16 20 20 Cl 1.73607 * 119.62282 * 179.97438 * 19 18 17 21 21 N 1.31962 * 120.74986 * 359.73771 * 19 18 17 22 22 C 1.31997 * 121.68936 * 0.52628 * 21 19 18 23 23 Cl 1.73603 * 119.62805 * 179.74912 * 22 21 19 24 24 H 1.09004 * 109.46972 * 60.00614 * 1 2 3 25 25 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47260 * 300.00643 * 1 2 3 27 27 H 0.97000 * 119.99540 * 180.02562 * 7 6 4 28 28 H 0.97002 * 120.00281 * 83.64606 * 12 2 1 29 29 H 1.08003 * 120.77600 * 0.02562 * 17 16 13 30 30 H 1.07995 * 120.41161 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1476 -2.2864 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8160 12 7 2.0183 -0.6905 1.1962 13 16 2.4441 0.1801 2.5391 14 8 3.2804 1.2352 2.0846 15 8 2.8495 -0.7660 3.5188 16 6 0.9778 0.9378 3.1559 17 6 0.8530 2.3186 3.1675 18 6 -0.3182 2.8717 3.6612 19 6 -1.3173 2.0336 4.1237 20 17 -2.7886 2.7139 4.7451 21 7 -1.1663 0.7230 4.0934 22 6 -0.0627 0.1626 3.6348 23 17 0.0814 -1.5675 3.6257 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7090 1.1612 -3.4845 28 1 2.0923 -1.6577 1.2017 29 1 1.6494 2.9486 2.7996 30 1 -0.4488 3.9434 3.6854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171092798.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:36 Heat of formation + Delta-G solvation = -68.385939 kcal Electronic energy + Delta-G solvation = -21208.406814 eV Core-core repulsion = 17603.025024 eV Total energy + Delta-G solvation = -3605.381790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 323.989 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64525 -38.52219 -38.21269 -37.84226 -37.29494 -37.00905 -34.25338 -34.13298 -32.44955 -30.17401 -27.24572 -25.53962 -25.30036 -22.83792 -20.80574 -19.56311 -19.16160 -18.68755 -18.42465 -17.72188 -17.07062 -16.37366 -16.26065 -16.19712 -15.41944 -14.88033 -14.62761 -14.54595 -14.09139 -13.82694 -13.57361 -13.28574 -13.24419 -13.05585 -12.83932 -12.80684 -12.68333 -12.62200 -12.43588 -12.37710 -12.23564 -11.99259 -11.54547 -11.24413 -11.12501 -10.58883 -10.45533 -10.14076 -8.13111 -6.25609 -1.08399 -0.66847 -0.39570 0.02298 0.55696 1.46338 1.49877 1.59608 1.79251 2.04898 2.46506 2.58482 2.99823 3.14045 3.18328 3.45950 3.71080 3.83046 4.22242 4.39327 4.49009 4.87259 4.88507 4.93056 5.10229 5.60214 5.75249 5.88346 6.01543 6.10224 6.38942 6.83800 7.43716 8.92593 Molecular weight = 323.99amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.004828 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.917496 B = 5798.458198 C = 6427.031273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.274 3.726 3 H 0.031 0.969 4 C -0.537 4.537 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.283 1.283 12 N -1.092 6.092 13 S 2.704 3.296 14 O -0.973 6.973 15 O -0.967 6.967 16 C -0.722 4.722 17 C 0.045 3.955 18 C -0.154 4.154 19 C 0.223 3.777 20 Cl 0.010 6.990 21 N -0.503 5.503 22 C 0.276 3.724 23 Cl 0.007 6.993 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.020 0.980 27 H 0.265 0.735 28 H 0.419 0.581 29 H 0.194 0.806 30 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 4.266 12.677 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.169 3.831 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.854 5.854 13 S 2.790 3.210 14 O -0.963 6.963 15 O -0.957 6.957 16 C -0.810 4.810 17 C 0.019 3.981 18 C -0.175 4.175 19 C 0.060 3.940 20 Cl 0.039 6.961 21 N -0.217 5.217 22 C 0.109 3.891 23 Cl 0.036 6.964 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.255 0.745 29 H 0.211 0.789 30 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.823 4.054 13.284 14.703 hybrid contribution -0.223 -0.378 -1.079 1.165 sum -5.046 3.675 12.206 13.709 Atomic orbital electron populations 1.22076 0.97905 1.00127 1.00091 1.18365 0.91063 0.92060 0.81582 0.95080 1.21588 1.31880 1.13397 0.90793 0.91439 1.25609 0.95083 0.95666 1.01655 1.69967 1.37102 1.23652 1.24453 0.85492 0.78085 0.78666 0.79290 1.19127 1.20678 1.20875 1.55330 1.83513 1.19437 1.27088 1.01529 0.73448 0.73330 0.72677 1.93554 1.63312 1.58157 1.81317 1.93577 1.80916 1.61327 1.59906 1.31931 1.23119 1.06412 1.19527 1.21892 0.97987 0.91285 0.86940 1.22473 0.91623 1.04068 0.99293 1.22182 0.90384 0.88490 0.92948 1.98448 1.31993 1.81320 1.84338 1.66372 1.23506 1.13370 1.18481 1.20897 0.88577 0.88256 0.91396 1.98482 1.96562 1.05418 1.95982 0.90981 0.94189 0.96061 0.92546 0.74474 0.78854 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 9.29 71.98 0.67 -5.51 16 2 C 0.27 12.47 2.91 44.25 0.13 12.60 16 3 H 0.03 1.55 7.48 -2.38 -0.02 1.53 16 4 C -0.54 -27.02 8.77 25.60 0.22 -26.80 16 5 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 6 C 0.02 1.03 5.30 84.65 0.45 1.48 16 7 N -0.91 -48.41 11.32 21.45 0.24 -48.17 16 8 Si 0.96 40.96 29.54 68.60 2.03 42.99 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 N -1.09 -41.61 5.20 -172.53 -0.90 -42.51 16 13 S 2.70 95.74 5.04 -56.49 -0.28 95.45 16 14 O -0.97 -38.56 16.37 -128.00 -2.10 -40.65 16 15 O -0.97 -35.35 16.57 -128.00 -2.12 -37.47 16 16 C -0.72 -22.27 4.98 22.39 0.11 -22.16 16 17 C 0.05 1.11 9.66 22.46 0.22 1.33 16 18 C -0.15 -3.06 9.88 22.39 0.22 -2.84 16 19 C 0.22 5.39 7.27 84.70 0.62 6.00 16 20 Cl 0.01 0.19 29.11 -2.72 -0.08 0.12 16 21 N -0.50 -14.89 10.32 -177.62 -1.83 -16.73 16 22 C 0.28 8.65 6.89 84.69 0.58 9.24 16 23 Cl 0.01 0.20 26.65 -2.72 -0.07 0.13 16 24 H 0.07 3.50 6.07 -2.38 -0.01 3.49 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.02 0.80 6.78 -2.39 -0.02 0.79 16 27 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 28 H 0.42 14.57 8.84 -96.74 -0.86 13.71 16 29 H 0.19 3.97 7.44 -2.91 -0.02 3.95 16 30 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -61.57 305.31 -1.53 -63.10 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.36 Total: 10.41 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.22 Total: -26.66 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -2.49 Total: -107.41 kcal Atomic # 8 Polarization: -73.91 SS G_CDS: -4.22 Total: -78.13 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Atomic # 16 Polarization: 95.74 SS G_CDS: -0.28 Total: 95.45 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.15 Total: 0.25 kcal Total: -61.57 -1.53 -63.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092798.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds