Wall clock time and date at job start Tue Mar 31 2020 14:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 N 1.29908 * 124.85742 * 89.69609 * 13 12 2 15 15 C 1.36054 * 108.80057 * 179.89608 * 14 13 12 16 16 C 1.39586 * 133.79099 * 180.02562 * 15 14 13 17 17 C 1.37765 * 119.72105 * 180.31225 * 16 15 14 18 18 Br 1.89103 * 119.80183 * 179.97438 * 17 16 15 19 19 C 1.38801 * 120.40083 * 359.97438 * 17 16 15 20 20 C 1.37898 * 120.46717 * 0.02562 * 19 17 16 21 21 C 1.38669 * 119.88564 * 359.97438 * 20 19 17 22 22 O 1.34230 * 124.85533 * 269.99704 * 13 12 2 23 23 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 24 24 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 25 25 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 26 26 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 27 27 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 28 28 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 30 30 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 31 31 H 1.07997 * 120.13968 * 0.28371 * 16 15 14 32 32 H 1.08002 * 119.76917 * 180.02562 * 19 17 16 33 33 H 1.08002 * 120.06001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 7 0.5483 -2.7719 -1.4180 15 6 0.5603 -4.0925 -1.0912 16 6 -0.3260 -5.1491 -1.3068 17 6 -0.0198 -6.4054 -0.8314 18 35 -1.2192 -7.8382 -1.1215 19 6 1.1638 -6.6257 -0.1407 20 6 2.0482 -5.5907 0.0792 21 6 1.7556 -4.3200 -0.3924 22 8 2.3943 -3.1303 -0.3398 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 2.9859 4.9182 0.7765 29 1 1.5612 -0.3873 -2.0628 30 1 3.0798 -0.6612 -1.1755 31 1 -1.2482 -4.9824 -1.8436 32 1 1.3939 -7.6148 0.2272 33 1 2.9675 -5.7697 0.6171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286497984.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:25 Heat of formation + Delta-G solvation = 49.945110 kcal Electronic energy + Delta-G solvation = -18552.797184 eV Core-core repulsion = 15433.632001 eV Total energy + Delta-G solvation = -3119.165183 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.31330 -38.39342 -36.81567 -34.72838 -32.72795 -32.25344 -30.61904 -29.58164 -27.69547 -27.03745 -24.47187 -23.03146 -22.51607 -21.63640 -20.46679 -18.05195 -17.35435 -16.83047 -16.52827 -15.82657 -14.94362 -14.59654 -14.38099 -14.24902 -14.08833 -13.81920 -13.21395 -12.67450 -12.54315 -12.01972 -11.84407 -11.66945 -11.64587 -11.24045 -10.95854 -10.90795 -10.75194 -10.67538 -10.58927 -10.45917 -10.00051 -9.38399 -8.87272 -8.66252 -8.50378 -7.53775 -6.10626 -4.12439 0.46533 0.76451 1.23399 2.28646 2.47160 3.28478 3.30485 3.34521 3.37698 3.75804 4.27460 4.37385 4.68180 4.74065 4.81074 4.92699 5.09037 5.25881 5.36442 5.51295 5.68382 5.75060 5.79258 5.97554 6.06834 6.09975 6.20154 6.28222 6.70208 7.06637 7.15865 7.58872 7.63981 7.87618 8.00666 8.35672 8.93712 9.51964 11.00236 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.002410 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.443355 B =11615.552030 C =11779.246470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.536 5.536 3 C 0.195 3.805 4 C -0.511 4.511 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.132 3.868 13 C 0.295 3.705 14 N -0.484 5.484 15 C 0.033 3.967 16 C -0.033 4.033 17 C -0.095 4.095 18 Br -0.041 7.041 19 C -0.079 4.079 20 C -0.079 4.079 21 C 0.016 3.984 22 O -0.200 6.200 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.020 0.980 26 H 0.035 0.965 27 H -0.001 1.001 28 H 0.263 0.737 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 -24.407 -4.923 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.262 5.262 3 C 0.071 3.929 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.003 3.997 13 C 0.084 3.916 14 N -0.214 5.214 15 C -0.079 4.079 16 C -0.054 4.054 17 C -0.176 4.176 18 Br 0.044 6.956 19 C -0.099 4.099 20 C -0.099 4.099 21 C -0.036 4.036 22 O -0.090 6.090 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.017 0.983 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.144 -24.660 -4.962 25.675 hybrid contribution 0.318 0.925 0.555 1.125 sum -4.825 -23.735 -4.407 24.618 Atomic orbital electron populations 1.22317 0.87645 1.00328 1.01192 1.62184 1.08189 1.18482 1.37356 1.19812 0.95656 0.80071 0.97395 1.21059 1.35380 0.96982 1.01535 0.91772 1.24969 0.95129 0.97228 0.97113 1.69934 1.38027 1.11598 1.34114 0.86517 0.78769 0.78315 0.83581 1.20104 1.21283 1.20201 1.20735 1.02522 0.80457 0.96002 1.26928 0.83935 0.93939 0.86815 1.70768 1.20589 1.04809 1.25202 1.19795 0.95312 0.91929 1.00910 1.20128 0.98734 0.88436 0.98094 1.21432 0.96968 0.93093 1.06060 1.96729 1.60061 1.42828 1.95941 1.20846 0.91841 0.99279 0.97893 1.19842 1.01305 0.87194 1.01513 1.20465 0.93766 0.87428 1.01930 1.84616 1.45498 1.16157 1.62758 0.93258 0.90247 0.96103 0.94665 0.98307 0.92710 0.90329 0.87619 0.83805 0.83479 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.17 60.07 0.55 1.22 16 2 N -0.54 -11.25 4.74 -245.82 -1.17 -12.42 16 3 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 4 C -0.51 -13.92 8.46 -34.44 -0.29 -14.22 16 5 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.13 2.27 5.59 -4.98 -0.03 2.24 16 13 C 0.30 4.98 6.90 -13.09 -0.09 4.89 16 14 N -0.48 -8.16 10.53 -8.70 -0.09 -8.25 16 15 C 0.03 0.50 7.24 -84.71 -0.61 -0.11 16 16 C -0.03 -0.41 9.82 -39.25 -0.39 -0.79 16 17 C -0.09 -0.99 6.22 -39.55 -0.25 -1.24 16 18 Br -0.04 -0.36 33.68 -68.01 -2.29 -2.65 16 19 C -0.08 -0.74 9.76 -39.50 -0.39 -1.12 16 20 C -0.08 -0.85 10.06 -39.55 -0.40 -1.25 16 21 C 0.02 0.23 7.43 -38.64 -0.29 -0.06 16 22 O -0.20 -3.28 10.77 3.58 0.04 -3.25 16 23 H 0.05 0.93 6.69 -51.93 -0.35 0.58 16 24 H 0.08 1.67 6.76 -51.93 -0.35 1.31 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.91 7.93 -51.93 -0.41 0.49 16 27 H 0.00 -0.02 8.12 -51.93 -0.42 -0.44 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 30 H 0.11 1.66 7.93 -51.93 -0.41 1.24 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -29.62 308.00 -9.01 -38.63 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -3.57 Total: -3.64 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.29 Total: -4.16 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.52 Total: -45.77 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.62 -9.01 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286497984.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.579 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds