Wall clock time and date at job start Tue Mar 31 2020 14:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.50703 * 109.47107 * 293.95458 * 12 2 1 14 14 N 1.29908 * 124.85742 * 89.69609 * 13 12 2 15 15 C 1.36054 * 108.80057 * 179.89608 * 14 13 12 16 16 C 1.39586 * 133.79099 * 180.02562 * 15 14 13 17 17 C 1.37765 * 119.72105 * 180.31225 * 16 15 14 18 18 Br 1.89103 * 119.80183 * 179.97438 * 17 16 15 19 19 C 1.38801 * 120.40083 * 359.97438 * 17 16 15 20 20 C 1.37898 * 120.46717 * 0.02562 * 19 17 16 21 21 C 1.38669 * 119.88564 * 359.97438 * 20 19 17 22 22 O 1.34230 * 124.85533 * 269.99704 * 13 12 2 23 23 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 24 24 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 25 25 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 26 26 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 27 27 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 28 28 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 30 30 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 31 31 H 1.07997 * 120.13968 * 0.28371 * 16 15 14 32 32 H 1.08002 * 119.76917 * 180.02562 * 19 17 16 33 33 H 1.08002 * 120.06001 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9727 14 7 0.5483 -2.7719 -1.4180 15 6 0.5603 -4.0925 -1.0912 16 6 -0.3260 -5.1491 -1.3068 17 6 -0.0198 -6.4054 -0.8314 18 35 -1.2192 -7.8382 -1.1215 19 6 1.1638 -6.6257 -0.1407 20 6 2.0482 -5.5907 0.0792 21 6 1.7556 -4.3200 -0.3924 22 8 2.3943 -3.1303 -0.3398 23 1 -0.3632 -1.0253 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4511 -0.9233 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 2.9859 4.9182 0.7765 29 1 1.5612 -0.3873 -2.0628 30 1 3.0798 -0.6612 -1.1755 31 1 -1.2482 -4.9824 -1.8436 32 1 1.3939 -7.6148 0.2272 33 1 2.9675 -5.7697 0.6171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286497984.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:24 Heat of formation + Delta-G solvation = 29.900913 kcal Electronic energy + Delta-G solvation = -18553.666366 eV Core-core repulsion = 15433.632001 eV Total energy + Delta-G solvation = -3120.034365 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.43620 -39.36776 -38.42136 -35.92137 -34.71675 -33.16679 -31.76172 -30.63350 -29.27666 -28.58333 -26.19100 -24.06864 -23.69847 -22.96990 -22.03703 -19.07608 -18.65251 -18.29774 -18.03944 -16.93633 -16.68491 -16.09586 -15.79561 -15.59739 -15.28447 -15.01033 -14.23312 -14.14234 -13.82978 -13.59717 -13.34242 -13.06523 -12.82095 -12.70156 -12.67683 -12.58681 -12.34278 -11.96659 -11.73526 -11.68319 -11.40504 -11.37282 -10.61136 -9.77960 -9.68641 -9.23933 -8.21032 -6.30303 -0.53004 -0.18439 0.40504 1.14786 1.36335 1.43325 1.45382 1.53455 2.31426 2.40948 2.61263 3.12283 3.28488 3.32230 3.75222 3.82476 3.93446 4.09256 4.24898 4.29879 4.45762 4.52405 4.63827 4.80778 4.91274 4.95952 5.00257 5.07056 5.14139 5.21512 5.29911 5.60989 5.96464 6.11724 6.41794 6.44353 6.82693 7.38648 8.89690 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.002410 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.443355 B =11615.552030 C =11779.246470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.137 3.863 13 C 0.278 3.722 14 N -0.495 5.495 15 C 0.003 3.997 16 C -0.040 4.040 17 C -0.093 4.093 18 Br -0.020 7.020 19 C -0.060 4.060 20 C -0.078 4.078 21 C -0.003 4.003 22 O -0.213 6.213 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.023 0.977 26 H 0.020 0.980 27 H -0.021 1.021 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.185 0.815 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -26.690 -4.027 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.272 5.272 3 C 0.084 3.916 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.570 5.570 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.008 3.992 13 C 0.066 3.934 14 N -0.225 5.225 15 C -0.109 4.109 16 C -0.061 4.061 17 C -0.174 4.174 18 Br 0.066 6.934 19 C -0.079 4.079 20 C -0.097 4.097 21 C -0.054 4.054 22 O -0.103 6.103 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.038 0.962 27 H -0.004 1.004 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.168 0.832 32 H 0.202 0.798 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.552 -26.978 -4.071 27.843 hybrid contribution 0.379 1.385 0.230 1.454 sum -5.173 -25.594 -3.840 26.392 Atomic orbital electron populations 1.22191 0.87049 1.00593 1.00594 1.62005 1.08775 1.16582 1.39837 1.19461 0.94555 0.81829 0.95752 1.21378 1.35318 0.97549 1.02365 0.92138 1.25813 0.94937 0.97892 1.00498 1.70045 1.38986 1.11974 1.35997 0.85484 0.78768 0.77268 0.79397 1.19503 1.20735 1.19418 1.20665 1.03057 0.80576 0.94914 1.26535 0.84601 0.93786 0.88458 1.70664 1.20548 1.06182 1.25131 1.20075 0.96666 0.91726 1.02474 1.20295 0.98700 0.88617 0.98494 1.21681 0.97653 0.92991 1.05079 1.96769 1.59532 1.41266 1.95846 1.21333 0.90452 1.00373 0.95764 1.20295 1.02622 0.85781 1.01036 1.20998 0.93732 0.87901 1.02769 1.84558 1.45869 1.16942 1.62974 0.92271 0.91789 0.95807 0.96186 1.00352 0.92535 0.89396 0.86627 0.83199 0.79775 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.78 9.17 127.69 1.17 2.95 16 2 N -0.55 -23.45 4.74 -931.63 -4.42 -27.87 16 3 C 0.21 10.66 4.72 85.56 0.40 11.07 16 4 C -0.53 -29.25 8.46 25.60 0.22 -29.03 16 5 H 0.06 3.33 7.12 -2.91 -0.02 3.31 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 8 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 C 0.14 4.79 5.59 85.56 0.48 5.27 16 13 C 0.28 9.52 6.90 88.39 0.61 10.13 16 14 N -0.49 -16.83 10.53 -296.27 -3.12 -19.95 16 15 C 0.00 0.09 7.24 39.32 0.28 0.37 16 16 C -0.04 -0.94 9.82 22.48 0.22 -0.72 16 17 C -0.09 -1.71 6.22 22.29 0.14 -1.57 16 18 Br -0.02 -0.29 33.68 -20.37 -0.69 -0.98 16 19 C -0.06 -0.91 9.76 22.32 0.22 -0.69 16 20 C -0.08 -1.48 10.06 22.29 0.22 -1.26 16 21 C 0.00 -0.09 7.43 22.88 0.17 0.08 16 22 O -0.21 -7.02 10.77 -10.10 -0.11 -7.13 16 23 H 0.06 2.25 6.69 -2.38 -0.02 2.23 16 24 H 0.06 2.74 6.76 -2.39 -0.02 2.72 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.02 1.07 7.93 -2.39 -0.02 1.05 16 27 H -0.02 -1.15 8.12 -2.38 -0.02 -1.17 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.09 2.89 8.12 -2.39 -0.02 2.87 16 30 H 0.12 3.73 7.93 -2.39 -0.02 3.71 16 31 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -64.12 308.00 -0.30 -64.42 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.13 Total: 2.46 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.60 Total: -2.53 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -7.26 Total: -101.81 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.11 Total: -7.13 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.98 kcal Total: -64.12 -0.30 -64.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286497984.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.317 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds