Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47050 * 270.00120 * 3 2 1 5 5 H 1.48507 * 109.46822 * 29.99720 * 3 2 1 6 6 H 1.48497 * 109.47153 * 149.99846 * 3 2 1 7 7 C 1.37877 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99710 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00473 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47473 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47129 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00132 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99905 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00151 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47511 * 180.02562 * 14 13 11 16 16 N 1.27934 * 124.24192 * 89.95778 * 15 14 13 17 17 C 1.34668 * 117.84085 * 180.02562 * 16 15 14 18 18 C 1.40986 * 129.63221 * 179.71225 * 17 16 15 19 19 C 1.37267 * 120.29775 * 179.85431 * 18 17 16 20 20 Cl 1.73603 * 119.69876 * 180.19545 * 19 18 17 21 21 C 1.38910 * 120.60192 * 0.43388 * 19 18 17 22 22 C 1.37607 * 120.06360 * 359.80527 * 21 19 18 23 23 C 1.39325 * 120.12644 * 359.97438 * 22 21 19 24 24 S 1.70647 * 124.23861 * 270.00542 * 15 14 13 25 25 H 0.96995 * 120.00149 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47519 * 59.99574 * 9 7 2 27 27 H 1.09005 * 109.46890 * 300.00147 * 9 7 2 28 28 H 1.08998 * 109.47376 * 59.99144 * 10 9 7 29 29 H 1.09004 * 109.46385 * 299.99723 * 10 9 7 30 30 H 0.96998 * 120.00193 * 359.97438 * 13 11 10 31 31 H 1.09005 * 109.47178 * 60.00134 * 14 13 11 32 32 H 1.09004 * 109.47449 * 299.99739 * 14 13 11 33 33 H 1.07993 * 119.85181 * 0.30897 * 18 17 16 34 34 H 1.08001 * 119.96554 * 179.78188 * 21 19 18 35 35 H 1.08005 * 119.94038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5286 -2.6364 0.0022 12 8 6.1350 -1.5860 0.0026 13 7 6.2026 -3.8035 0.0028 14 6 7.6675 -3.8035 0.0035 15 6 8.1700 -5.2243 0.0035 16 7 8.4097 -5.9030 -1.0541 17 6 8.8554 -7.1649 -0.9040 18 6 9.1882 -8.1235 -1.8828 19 6 9.6322 -9.3679 -1.5105 20 17 10.0425 -10.5347 -2.7287 21 6 9.7515 -9.7038 -0.1679 22 6 9.4274 -8.7851 0.8039 23 6 8.9795 -7.5157 0.4447 24 16 8.4894 -6.1297 1.4142 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8910 27 1 3.8752 -0.6803 -0.8889 28 1 3.6586 -3.1502 -0.8891 29 1 3.6580 -3.1504 0.8908 30 1 5.7176 -4.6436 0.0029 31 1 8.0305 -3.2894 0.8935 32 1 8.0313 -3.2900 -0.8866 33 1 9.1005 -7.8752 -2.9301 34 1 10.0985 -10.6871 0.1134 35 1 9.5205 -9.0485 1.8472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292441967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -17.051329 kcal Electronic energy + Delta-G solvation = -20648.087060 eV Core-core repulsion = 17183.197250 eV Total energy + Delta-G solvation = -3464.889810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.044 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.64536 -40.73763 -38.67027 -37.33481 -35.87228 -35.48528 -33.36446 -32.17710 -31.52930 -29.20030 -27.48005 -25.13686 -23.92432 -23.13406 -22.10013 -21.28711 -19.82551 -19.23136 -18.04034 -17.72790 -17.43820 -16.86674 -16.60994 -16.52505 -16.23262 -15.86296 -15.20474 -14.93046 -14.80698 -14.64748 -14.34296 -14.11399 -13.91080 -13.75398 -13.39173 -13.18301 -12.87909 -12.35126 -12.29711 -12.10773 -12.01023 -11.95628 -11.75128 -11.38896 -11.15427 -10.95600 -10.82955 -10.76868 -10.26306 -9.83241 -9.24941 -8.30058 -6.33067 -0.91603 -0.22329 0.00918 0.48394 0.93864 0.99816 1.35277 1.37037 1.51815 1.62488 2.14041 2.36430 2.39059 2.63403 3.05730 3.34170 3.62632 3.85276 3.94363 3.96355 4.13922 4.29319 4.38780 4.49541 4.51063 4.58227 4.79247 4.89477 4.97768 4.99594 5.19880 5.33262 5.38679 5.46402 5.62346 6.24202 6.33052 6.43114 6.73531 7.18694 7.32231 8.85548 Molecular weight = 324.04amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.002063 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.164942 B =13568.725353 C =13952.342112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.004 3.996 10 C -0.116 4.116 11 C 0.524 3.476 12 O -0.576 6.576 13 N -0.717 5.717 14 C 0.194 3.806 15 C 0.064 3.936 16 N -0.473 5.473 17 C 0.066 3.934 18 C -0.066 4.066 19 C -0.024 4.024 20 Cl -0.051 7.051 21 C -0.084 4.084 22 C -0.052 4.052 23 C -0.197 4.197 24 S 0.183 5.817 25 H 0.267 0.733 26 H 0.014 0.986 27 H 0.009 0.991 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.414 0.586 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.177 0.823 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.435 -25.037 2.418 35.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.034 4.034 10 C -0.156 4.156 11 C 0.312 3.688 12 O -0.455 6.455 13 N -0.372 5.372 14 C 0.067 3.933 15 C -0.220 4.220 16 N -0.188 5.188 17 C -0.055 4.055 18 C -0.088 4.088 19 C -0.054 4.054 20 Cl -0.022 7.022 21 C -0.106 4.106 22 C -0.075 4.075 23 C -0.317 4.317 24 S 0.441 5.559 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.251 0.749 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.162 0.838 34 H 0.195 0.805 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 25.575 -23.712 2.869 34.994 hybrid contribution -0.137 0.024 -1.246 1.254 sum 25.438 -23.688 1.623 34.797 Atomic orbital electron populations 1.70025 1.07827 1.28081 1.52559 1.25832 0.95518 1.02956 0.94320 0.85812 0.79340 0.79377 0.79091 1.19533 1.20472 1.18203 1.21435 0.91318 0.93679 1.50246 0.93216 1.19241 0.93867 0.93665 0.96625 1.21505 0.88740 1.00097 1.05243 1.21146 0.90961 0.82756 0.73907 1.90661 1.71169 1.32875 1.50814 1.45843 1.05807 1.09198 1.76349 1.19827 0.80951 0.87437 1.05052 1.26527 1.02133 1.01031 0.92290 1.66145 1.14260 1.05877 1.32535 1.19072 1.03380 0.90599 0.92431 1.20521 0.98300 0.90422 0.99582 1.20669 1.02671 0.90796 0.91249 1.98407 1.91879 1.57180 1.54727 1.21414 0.98454 1.01537 0.89227 1.20698 0.96285 0.88547 1.01922 1.24365 1.08937 1.01813 0.96561 1.83969 1.62692 1.01860 1.07408 0.92419 0.96720 0.97231 0.88077 0.87525 0.74918 0.87728 0.89231 0.83755 0.80546 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.01 0.67 5.47 84.65 0.46 1.13 16 3 Si 0.94 46.50 27.47 68.60 1.88 48.39 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.26 -12.56 6.54 99.48 0.65 -11.90 16 7 C -0.53 -30.30 9.66 25.60 0.25 -30.06 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.00 0.20 3.33 29.85 0.10 0.30 16 10 C -0.12 -4.25 5.64 29.85 0.17 -4.09 16 11 C 0.52 17.71 7.83 87.66 0.69 18.39 16 12 O -0.58 -24.11 15.98 -3.03 -0.05 -24.16 16 13 N -0.72 -17.58 5.55 -466.80 -2.59 -20.17 16 14 C 0.19 4.26 6.23 85.63 0.53 4.80 16 15 C 0.06 1.27 6.65 88.68 0.59 1.86 16 16 N -0.47 -10.88 10.57 -182.50 -1.93 -12.80 16 17 C 0.07 1.31 6.99 39.79 0.28 1.59 16 18 C -0.07 -1.13 9.86 22.71 0.22 -0.91 16 19 C -0.02 -0.31 6.30 22.20 0.14 -0.17 16 20 Cl -0.05 -0.61 28.93 -2.72 -0.08 -0.69 16 21 C -0.08 -0.73 9.82 22.28 0.22 -0.51 16 22 C -0.05 -0.50 10.06 22.38 0.23 -0.27 16 23 C -0.20 -3.06 6.55 22.94 0.15 -2.91 16 24 S 0.18 2.69 23.11 -56.49 -1.31 1.38 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.01 0.73 7.16 -2.39 -0.02 0.72 16 27 H 0.01 0.47 7.53 -2.38 -0.02 0.46 16 28 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 30 H 0.41 8.23 8.46 -92.71 -0.78 7.44 16 31 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 35 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 Total: -1.00 -74.16 336.89 0.56 -73.60 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.30 Total: 4.12 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.02 Total: -10.84 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -4.22 Total: -91.79 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.39 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.31 Total: 1.38 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -74.16 0.56 -73.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292441967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.548 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds