Wall clock time and date at job start Tue Mar 31 2020 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99635 * 2 1 4 4 H 1.48505 * 109.47053 * 269.99592 * 3 2 1 5 5 H 1.48502 * 109.47201 * 149.99638 * 3 2 1 6 6 H 1.48501 * 109.47632 * 29.99530 * 3 2 1 7 7 C 1.38814 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99525 * 154.88151 * 7 2 1 9 9 N 1.36932 * 120.00191 * 334.88969 * 7 2 1 10 10 C 1.47269 * 121.35308 * 330.09744 * 9 7 2 11 11 C 1.52988 * 108.18943 * 241.48248 * 10 9 7 12 12 N 1.45646 * 110.76949 * 313.27298 * 11 10 9 13 13 C 1.33384 * 124.59093 * 21.92503 * 12 11 10 14 14 O 1.21280 * 118.48745 * 175.66149 * 13 12 11 15 15 C 1.47053 * 121.35566 * 149.81181 * 9 7 2 16 16 H 1.08995 * 109.56466 * 17.46130 * 15 9 7 17 17 C 1.50701 * 109.56754 * 257.10505 * 15 9 7 18 18 C 1.38268 * 119.99032 * 117.27015 * 17 15 9 19 19 C 1.38221 * 120.01642 * 179.97438 * 18 17 15 20 20 C 1.38239 * 120.00925 * 359.97438 * 19 18 17 21 21 C 1.38294 * 119.99281 * 359.97438 * 20 19 18 22 22 Br 1.89101 * 120.01180 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99921 * 296.99802 * 17 15 9 24 24 H 0.96995 * 119.99521 * 174.61572 * 1 2 3 25 25 H 1.09000 * 109.72054 * 1.15395 * 10 9 7 26 26 H 1.09001 * 109.72422 * 121.80586 * 10 9 7 27 27 H 1.09002 * 109.21842 * 73.60418 * 11 10 9 28 28 H 1.09002 * 109.21841 * 192.94242 * 11 10 9 29 29 H 0.97002 * 117.70479 * 201.89939 * 12 11 10 30 30 H 1.07998 * 119.98804 * 359.97438 * 18 17 15 31 31 H 1.08000 * 119.98971 * 179.97438 * 19 18 17 32 32 H 1.08006 * 120.00154 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.99880 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 3.5477 1.4403 0.7001 6 1 1.4475 2.6528 0.6999 7 6 2.0104 -1.2021 0.0005 8 1 3.0138 -1.2464 -0.3965 9 7 1.4229 -2.3318 0.5043 10 6 0.4249 -2.2597 1.5849 11 6 0.9713 -3.0254 2.7914 12 7 1.5076 -4.3168 2.3839 13 6 1.9076 -4.6143 1.1467 14 8 2.4112 -5.6994 0.9468 15 6 1.7581 -3.6657 -0.0160 16 1 2.6955 -3.6164 -0.5701 17 6 0.6560 -4.1444 -0.9255 18 6 0.9174 -4.3825 -2.2622 19 6 -0.0930 -4.8220 -3.0967 20 6 -1.3651 -5.0244 -2.5951 21 6 -1.6268 -4.7874 -1.2580 22 35 -3.3670 -5.0633 -0.5713 23 6 -0.6144 -4.3508 -0.4223 24 1 -0.4849 -0.8363 -0.0788 25 1 0.2525 -1.2185 1.8575 26 1 -0.5093 -2.7133 1.2538 27 1 1.7626 -2.4399 3.2596 28 1 0.1678 -3.1816 3.5112 29 1 1.5793 -5.0089 3.0597 30 1 1.9113 -4.2249 -2.6543 31 1 0.1116 -5.0075 -4.1409 32 1 -2.1544 -5.3682 -3.2472 33 1 -0.8172 -4.1694 0.6229 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334266120.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:08 Heat of formation + Delta-G solvation = 2.546252 kcal Electronic energy + Delta-G solvation = -20076.595491 eV Core-core repulsion = 16955.374939 eV Total energy + Delta-G solvation = -3121.220552 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66926 -39.83982 -38.04221 -35.77907 -34.21687 -33.14825 -31.75863 -30.68760 -29.96668 -27.78148 -25.58924 -23.91086 -23.24269 -22.88421 -20.14723 -19.66443 -18.14642 -17.70104 -17.63281 -16.79618 -16.51810 -16.02738 -15.62646 -15.45809 -15.19928 -14.84340 -14.51158 -14.25141 -14.13036 -13.52223 -13.36792 -12.76347 -12.72750 -12.43877 -12.28482 -12.04095 -11.88845 -11.83589 -11.56566 -11.34790 -11.21503 -10.48351 -10.12551 -9.87166 -9.67666 -9.04700 -8.30967 -5.50445 0.09746 0.26668 0.55881 1.50207 1.63085 1.68350 1.86811 2.24472 2.55995 2.68982 3.15855 3.29921 3.64418 3.69441 3.88666 4.00394 4.11878 4.22945 4.29515 4.39489 4.46819 4.56328 4.72450 4.87748 4.97216 5.06727 5.19943 5.29269 5.50723 5.68946 5.81554 5.85438 6.20836 6.33757 6.83999 7.14446 7.62503 8.04759 8.94792 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.005654 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.956377 B = 4951.032895 C = 5442.162018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.056 4.056 3 Si 1.114 2.886 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.358 4.358 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.120 3.880 11 C 0.099 3.901 12 N -0.699 5.699 13 C 0.522 3.478 14 O -0.594 6.594 15 C 0.189 3.811 16 H 0.091 0.909 17 C -0.087 4.087 18 C -0.106 4.106 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.100 4.100 22 Br -0.047 7.047 23 C -0.098 4.098 24 H 0.258 0.742 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.403 0.597 30 H 0.135 0.865 31 H 0.166 0.834 32 H 0.156 0.844 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -8.792 -0.172 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.255 4.255 3 Si 0.939 3.061 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.214 1.214 7 C -0.487 4.487 8 H 0.071 0.929 9 N -0.313 5.313 10 C -0.005 4.005 11 C -0.026 4.026 12 N -0.349 5.349 13 C 0.308 3.692 14 O -0.476 6.476 15 C 0.079 3.921 16 H 0.109 0.891 17 C -0.091 4.091 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.180 4.180 22 Br 0.039 6.961 23 C -0.118 4.118 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.239 0.761 30 H 0.153 0.847 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.760 -7.554 -0.066 9.500 hybrid contribution 0.503 -1.620 -0.005 1.696 sum -5.256 -9.174 -0.072 10.573 Atomic orbital electron populations 1.70886 1.07391 1.29776 1.48545 1.27111 0.96467 1.04390 0.97497 0.82866 0.74181 0.72211 0.76852 1.21411 1.20121 1.21374 1.20102 0.97140 0.88448 1.42964 0.92925 1.44538 1.48858 1.00534 1.37385 1.21540 0.91102 1.00476 0.87359 1.22025 0.99588 0.83121 0.97904 1.45197 1.63390 1.16301 1.10026 1.20678 0.76059 0.87048 0.85448 1.90653 1.46615 1.25503 1.84811 1.19779 0.96508 0.85194 0.90584 0.89136 1.20418 0.95081 0.97657 0.95992 1.21425 1.00863 0.97572 0.92668 1.21470 0.91652 0.98286 1.01151 1.21381 0.98450 0.99314 0.92934 1.21885 0.91721 1.07528 0.96826 1.96619 1.16774 1.95769 1.86966 1.21062 0.92199 0.98626 0.99905 0.93151 0.90311 0.94695 0.91328 0.87257 0.76066 0.84725 0.81662 0.82588 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.64 12.37 21.65 0.27 -51.37 16 2 C -0.06 -2.91 4.73 84.86 0.40 -2.51 16 3 Si 1.11 47.35 29.99 68.60 2.06 49.41 16 4 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.36 -18.40 9.57 84.03 0.80 -17.59 16 8 H 0.05 2.76 7.95 -2.91 -0.02 2.74 16 9 N -0.59 -27.07 2.45 -682.96 -1.67 -28.75 16 10 C 0.12 4.93 4.45 86.23 0.38 5.31 16 11 C 0.10 3.08 7.34 86.54 0.63 3.71 16 12 N -0.70 -22.88 5.42 -466.67 -2.53 -25.41 16 13 C 0.52 20.89 6.61 87.91 0.58 21.47 16 14 O -0.59 -26.40 17.80 -3.03 -0.05 -26.45 16 15 C 0.19 8.01 2.91 43.43 0.13 8.14 16 16 H 0.09 3.97 7.75 -2.39 -0.02 3.95 16 17 C -0.09 -3.46 5.01 -19.87 -0.10 -3.56 16 18 C -0.11 -3.67 9.67 22.27 0.22 -3.46 16 19 C -0.11 -3.03 10.05 22.27 0.22 -2.80 16 20 C -0.10 -2.89 9.79 22.28 0.22 -2.67 16 21 C -0.10 -3.32 6.22 22.31 0.14 -3.18 16 22 Br -0.05 -1.32 33.70 -20.37 -0.69 -2.00 16 23 C -0.10 -3.69 8.06 22.28 0.18 -3.51 16 24 H 0.26 14.74 6.98 -92.71 -0.65 14.09 16 25 H 0.08 3.63 6.15 -2.39 -0.01 3.61 16 26 H 0.04 1.45 5.03 -2.39 -0.01 1.44 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.40 11.01 8.80 -92.71 -0.82 10.20 16 30 H 0.13 4.27 7.95 -2.91 -0.02 4.24 16 31 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.12 4.65 5.54 -2.91 -0.02 4.64 16 Total: -1.00 -63.64 296.01 1.66 -61.98 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.46 Total: 23.23 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 3.81 Total: -0.64 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.93 Total: -105.53 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.06 Total: 49.41 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -0.69 Total: -2.00 kcal Total: -63.64 1.66 -61.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334266120.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.529 kcal (2) G-P(sol) polarization free energy of solvation -63.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds