Wall clock time and date at job start Tue Mar 31 2020 13:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48493 * 109.47212 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46778 * 119.99981 * 3 2 1 7 7 C 1.39019 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36827 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00016 * 180.02562 * 9 7 2 11 11 O 1.21790 * 120.00027 * 359.97438 * 10 9 7 12 12 C 1.46181 * 120.00050 * 179.97438 * 10 9 7 13 13 N 1.37708 * 126.34602 * 0.02562 * 12 10 9 14 14 H 0.97005 * 125.55640 * 0.02562 * 13 12 10 15 15 C 1.35718 * 108.88764 * 179.97438 * 13 12 10 16 16 C 1.35117 * 109.24754 * 0.22984 * 15 13 12 17 17 C 1.39276 * 126.34486 * 179.97438 * 12 10 9 18 18 C 1.48088 * 126.63879 * 0.02607 * 17 12 10 19 19 C 1.39585 * 120.15212 * 89.71879 * 18 17 12 20 20 Cl 1.73602 * 120.07254 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.84775 * 179.79345 * 19 18 17 22 22 C 1.38326 * 120.15284 * 0.46528 * 21 19 18 23 23 C 1.38328 * 120.30169 * 359.78844 * 22 21 19 24 24 C 1.38119 * 120.15024 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.07894 * 179.97438 * 24 23 22 26 26 H 0.96997 * 120.00299 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00100 * 0.02562 * 9 7 2 28 28 H 1.08002 * 125.37284 * 179.97438 * 15 13 12 29 29 H 1.08002 * 126.08285 * 179.73209 * 16 15 13 30 30 H 1.08007 * 119.92454 * 180.20950 * 21 19 18 31 31 H 1.08000 * 119.85159 * 179.76666 * 22 21 19 32 32 H 1.07996 * 119.93026 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0091 -1.2039 -0.0005 8 1 3.0890 -1.2040 -0.0001 9 7 1.3250 -2.3889 -0.0005 10 6 1.9989 -3.5561 -0.0005 11 8 3.2168 -3.5561 -0.0010 12 6 1.2681 -4.8221 0.0000 13 7 -0.1006 -4.9744 0.0001 14 1 -0.7485 -4.2524 -0.0006 15 6 -0.3952 -6.2992 0.0001 16 6 0.7533 -7.0109 0.0052 17 6 1.8269 -6.0978 -0.0004 18 6 3.2700 -6.4305 -0.0010 19 6 3.9549 -6.5825 1.2057 20 17 3.1169 -6.3825 2.7129 21 6 5.2997 -6.8969 1.1979 22 6 5.9700 -7.0518 -0.0021 23 6 5.2986 -6.8975 -1.2017 24 6 3.9526 -6.5878 -1.2084 25 17 3.1120 -6.3939 -2.7148 26 1 -0.4850 0.8400 0.0004 27 1 0.3549 -2.3889 -0.0005 28 1 -1.3906 -6.7183 0.0006 29 1 0.8341 -8.0879 0.0105 30 1 5.8301 -7.0181 2.1309 31 1 7.0225 -7.2941 -0.0026 32 1 5.8278 -7.0202 -2.1351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336406179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:41 Heat of formation + Delta-G solvation = 16.738481 kcal Electronic energy + Delta-G solvation = -22259.784457 eV Core-core repulsion = 18658.483082 eV Total energy + Delta-G solvation = -3601.301375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 324.017 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74409 -38.82969 -37.65973 -36.32124 -35.83623 -34.11295 -32.36414 -31.30726 -30.35767 -29.56854 -28.19259 -25.13546 -23.08744 -22.41153 -21.39181 -20.13476 -19.03622 -18.38368 -17.28786 -16.81723 -15.60734 -15.37639 -14.97056 -14.43999 -14.05820 -14.04329 -14.02021 -13.63178 -13.35075 -12.87179 -12.74312 -12.48709 -12.12685 -11.91468 -11.65458 -11.58697 -11.58085 -11.13544 -10.77218 -10.56909 -10.51838 -10.51110 -10.31894 -9.62673 -8.79639 -8.49321 -8.41995 -8.26501 -8.11000 -7.67509 -6.56015 -3.90947 1.29951 1.34732 2.11411 2.25647 2.67189 3.08996 3.19876 3.20100 3.24736 3.56785 3.73660 4.08825 4.31796 4.89502 4.91751 4.99763 5.24472 5.32609 5.34477 5.48491 5.65784 5.75394 5.81884 6.02662 6.22996 6.35008 6.36874 6.41548 6.58476 6.80150 7.13845 7.30700 7.43488 7.79752 7.98661 8.48282 9.05026 9.38188 9.91202 10.61544 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004734 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.537266 B = 5913.019099 C = 6087.804705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.023 3.977 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.294 4.294 8 H 0.108 0.892 9 N -0.552 5.552 10 C 0.498 3.502 11 O -0.569 6.569 12 C 0.033 3.967 13 N -0.541 5.541 14 H 0.418 0.582 15 C -0.006 4.006 16 C -0.180 4.180 17 C -0.096 4.096 18 C 0.042 3.958 19 C -0.004 4.004 20 Cl -0.058 7.058 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.004 4.004 25 Cl -0.058 7.058 26 H 0.275 0.725 27 H 0.387 0.613 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -14.850 0.001 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.423 4.423 8 H 0.125 0.875 9 N -0.187 5.187 10 C 0.285 3.715 11 O -0.453 6.453 12 C -0.083 4.083 13 N -0.138 5.138 14 H 0.256 0.744 15 C -0.139 4.139 16 C -0.204 4.204 17 C -0.105 4.105 18 C 0.040 3.960 19 C -0.031 4.031 20 Cl -0.029 7.029 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.032 4.032 25 Cl -0.029 7.029 26 H 0.085 0.915 27 H 0.219 0.781 28 H 0.181 0.819 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.118 -14.473 0.001 14.805 hybrid contribution -0.793 1.293 0.001 1.517 sum 2.325 -13.180 0.002 13.383 Atomic orbital electron populations 1.69570 1.06076 1.28672 1.49523 1.25321 0.95675 0.99952 0.96955 0.85861 0.78813 0.80028 0.79287 1.19690 1.20849 1.19697 1.19704 0.93637 0.81963 1.47034 0.87461 1.41772 1.08803 1.04863 1.63255 1.16584 0.87341 0.81659 0.85884 1.90710 1.12083 1.86007 1.56494 1.21112 0.81581 0.95373 1.10247 1.42114 1.06859 1.07928 1.56872 0.74417 1.21621 0.99448 0.82512 1.10359 1.20578 0.90659 0.98431 1.10733 1.17867 0.90369 0.91312 1.10935 1.17675 0.92136 0.96576 0.89629 1.20824 0.92576 1.02964 0.86774 1.98356 1.78453 1.95729 1.30360 1.20968 0.92228 1.00745 0.99209 1.20925 0.99817 1.00618 0.91046 1.20970 0.92196 1.00760 0.99212 1.20828 0.92550 1.03012 0.86773 1.98355 1.78326 1.95794 1.30422 0.91547 0.78057 0.81914 0.84697 0.84848 0.84735 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.29 -8.07 9.67 -15.03 -0.15 -8.22 16 8 H 0.11 3.08 7.15 -52.49 -0.38 2.71 16 9 N -0.55 -13.99 5.27 -12.32 -0.06 -14.05 16 10 C 0.50 12.23 7.72 -13.07 -0.10 12.13 16 11 O -0.57 -15.55 15.33 5.11 0.08 -15.47 16 12 C 0.03 0.67 7.09 -81.65 -0.58 0.09 16 13 N -0.54 -8.73 5.99 -9.22 -0.06 -8.79 16 14 H 0.42 6.00 8.18 -40.82 -0.33 5.67 16 15 C -0.01 -0.08 11.86 -16.94 -0.20 -0.29 16 16 C -0.18 -2.74 10.79 -39.67 -0.43 -3.17 16 17 C -0.10 -1.77 3.73 -104.45 -0.39 -2.16 16 18 C 0.04 0.76 4.45 -104.85 -0.47 0.30 16 19 C 0.00 -0.07 6.35 -39.13 -0.25 -0.32 16 20 Cl -0.06 -0.97 28.04 -51.86 -1.45 -2.42 16 21 C -0.11 -1.59 9.82 -39.60 -0.39 -1.98 16 22 C -0.11 -1.34 10.04 -39.52 -0.40 -1.74 16 23 C -0.11 -1.59 9.82 -39.59 -0.39 -1.98 16 24 C 0.00 -0.08 6.35 -39.12 -0.25 -0.32 16 25 Cl -0.06 -0.97 28.04 -51.86 -1.45 -2.42 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.39 9.19 7.01 -40.82 -0.29 8.90 16 28 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -31.58 320.71 -8.74 -40.31 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -2.24 Total: 12.43 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -4.08 Total: -7.14 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.60 Total: -45.81 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -2.91 Total: -4.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.58 -8.74 -40.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336406179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds