Wall clock time and date at job start Tue Mar 31 2020 13:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31396 * 1 3 3 Si 1.86803 * 119.99723 * 2 1 4 4 H 1.48493 * 109.47212 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46778 * 119.99981 * 3 2 1 7 7 C 1.39019 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36827 * 120.00062 * 359.97438 * 7 2 1 10 10 C 1.34783 * 120.00016 * 180.02562 * 9 7 2 11 11 O 1.21790 * 120.00027 * 359.97438 * 10 9 7 12 12 C 1.46181 * 120.00050 * 179.97438 * 10 9 7 13 13 N 1.37708 * 126.34602 * 0.02562 * 12 10 9 14 14 H 0.97005 * 125.55640 * 0.02562 * 13 12 10 15 15 C 1.35718 * 108.88764 * 179.97438 * 13 12 10 16 16 C 1.35117 * 109.24754 * 0.22984 * 15 13 12 17 17 C 1.39276 * 126.34486 * 179.97438 * 12 10 9 18 18 C 1.48088 * 126.63879 * 0.02607 * 17 12 10 19 19 C 1.39585 * 120.15212 * 89.71879 * 18 17 12 20 20 Cl 1.73602 * 120.07254 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.84775 * 179.79345 * 19 18 17 22 22 C 1.38326 * 120.15284 * 0.46528 * 21 19 18 23 23 C 1.38328 * 120.30169 * 359.78844 * 22 21 19 24 24 C 1.38119 * 120.15024 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.07894 * 179.97438 * 24 23 22 26 26 H 0.96997 * 120.00299 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00100 * 0.02562 * 9 7 2 28 28 H 1.08002 * 125.37284 * 179.97438 * 15 13 12 29 29 H 1.08002 * 126.08285 * 179.73209 * 16 15 13 30 30 H 1.08007 * 119.92454 * 180.20950 * 21 19 18 31 31 H 1.08000 * 119.85159 * 179.76666 * 22 21 19 32 32 H 1.07996 * 119.93026 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2828 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0091 -1.2039 -0.0005 8 1 3.0890 -1.2040 -0.0001 9 7 1.3250 -2.3889 -0.0005 10 6 1.9989 -3.5561 -0.0005 11 8 3.2168 -3.5561 -0.0010 12 6 1.2681 -4.8221 0.0000 13 7 -0.1006 -4.9744 0.0001 14 1 -0.7485 -4.2524 -0.0006 15 6 -0.3952 -6.2992 0.0001 16 6 0.7533 -7.0109 0.0052 17 6 1.8269 -6.0978 -0.0004 18 6 3.2700 -6.4305 -0.0010 19 6 3.9549 -6.5825 1.2057 20 17 3.1169 -6.3825 2.7129 21 6 5.2997 -6.8969 1.1979 22 6 5.9700 -7.0518 -0.0021 23 6 5.2986 -6.8975 -1.2017 24 6 3.9526 -6.5878 -1.2084 25 17 3.1120 -6.3939 -2.7148 26 1 -0.4850 0.8400 0.0004 27 1 0.3549 -2.3889 -0.0005 28 1 -1.3906 -6.7183 0.0006 29 1 0.8341 -8.0879 0.0105 30 1 5.8301 -7.0181 2.1309 31 1 7.0225 -7.2941 -0.0026 32 1 5.8278 -7.0202 -2.1351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336406179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:40 Heat of formation + Delta-G solvation = -2.520967 kcal Electronic energy + Delta-G solvation = -22260.619609 eV Core-core repulsion = 18658.483082 eV Total energy + Delta-G solvation = -3602.136527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 324.017 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08562 -39.99955 -39.51081 -37.57377 -37.07512 -36.06654 -33.73451 -33.14967 -31.50534 -30.86105 -29.58553 -27.00646 -24.40201 -23.57726 -22.88654 -21.45478 -20.47511 -20.15970 -19.01378 -17.98089 -17.00805 -16.82154 -16.37208 -16.05792 -15.79664 -15.64711 -15.23176 -14.88400 -14.61838 -14.41704 -14.35265 -13.76402 -13.60517 -13.27635 -13.18276 -12.96173 -12.84897 -12.66579 -12.48727 -12.15274 -11.96441 -11.78877 -11.78231 -11.57400 -10.63428 -10.09702 -9.74963 -9.60477 -9.56638 -9.03991 -8.53979 -5.98071 0.12993 0.18044 0.63922 1.02408 1.38968 1.42737 1.43396 1.49764 1.90370 2.24954 2.32206 2.50585 2.57698 3.17089 3.27740 3.76894 3.95591 4.21372 4.29985 4.37779 4.42094 4.54501 4.55963 4.64136 5.03429 5.19577 5.20355 5.29122 5.30259 5.37209 5.72038 5.79271 5.91564 6.07193 6.52250 6.65075 7.04954 7.45450 8.00464 8.63573 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004734 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.537266 B = 5913.019099 C = 6087.804705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.083 0.917 9 N -0.565 5.565 10 C 0.504 3.496 11 O -0.606 6.606 12 C -0.024 4.024 13 N -0.536 5.536 14 H 0.425 0.575 15 C 0.033 3.967 16 C -0.200 4.200 17 C -0.077 4.077 18 C 0.008 3.992 19 C -0.027 4.027 20 Cl -0.067 7.067 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.027 4.027 25 Cl -0.067 7.067 26 H 0.280 0.720 27 H 0.391 0.609 28 H 0.215 0.785 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -16.243 0.000 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.101 0.899 9 N -0.200 5.200 10 C 0.293 3.707 11 O -0.492 6.492 12 C -0.139 4.139 13 N -0.133 5.133 14 H 0.263 0.737 15 C -0.102 4.102 16 C -0.224 4.224 17 C -0.086 4.086 18 C 0.006 3.994 19 C -0.054 4.054 20 Cl -0.038 7.038 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.133 4.133 24 C -0.055 4.055 25 Cl -0.038 7.038 26 H 0.089 0.911 27 H 0.224 0.776 28 H 0.231 0.769 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.197 0.803 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.227 -15.862 0.000 16.187 hybrid contribution -0.812 1.488 0.001 1.695 sum 2.415 -14.374 0.001 14.575 Atomic orbital electron populations 1.69625 1.06831 1.29604 1.49681 1.26054 0.96581 1.02374 0.96052 0.84985 0.77846 0.76502 0.79037 1.19637 1.19266 1.19650 1.19630 0.92916 0.83658 1.49719 0.89937 1.41740 1.08875 1.04760 1.64672 1.17176 0.87236 0.82732 0.83518 1.90650 1.13896 1.87039 1.57593 1.20462 0.83359 0.93907 1.16143 1.42128 1.05570 1.09244 1.56343 0.73656 1.22474 1.01270 0.81032 1.05393 1.20950 0.90210 0.99481 1.11733 1.18221 0.91414 0.91170 1.07842 1.17942 0.92558 0.98298 0.90644 1.21089 0.93791 1.04332 0.86222 1.98340 1.78847 1.95897 1.30703 1.21393 0.91268 0.99546 1.01090 1.21450 1.01624 0.98320 0.89726 1.21396 0.91238 0.99564 1.01095 1.21092 0.93763 1.04374 0.86221 1.98339 1.78719 1.95960 1.30757 0.91080 0.77572 0.76854 0.82427 0.82323 0.80349 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.05 21.68 0.28 -48.63 16 2 C -0.01 -0.55 5.50 84.95 0.47 -0.08 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.95 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.33 -18.90 9.67 84.10 0.81 -18.08 16 8 H 0.08 5.02 7.15 -2.91 -0.02 5.00 16 9 N -0.56 -29.83 5.27 -311.05 -1.64 -31.47 16 10 C 0.50 25.74 7.72 86.30 0.67 26.41 16 11 O -0.61 -34.58 15.33 -4.64 -0.07 -34.65 16 12 C -0.02 -0.97 7.09 40.53 0.29 -0.69 16 13 N -0.54 -16.78 5.99 -183.08 -1.10 -17.88 16 14 H 0.42 11.92 8.18 -92.70 -0.76 11.17 16 15 C 0.03 0.81 11.86 83.37 0.99 1.79 16 16 C -0.20 -5.72 10.79 22.21 0.24 -5.48 16 17 C -0.08 -2.80 3.73 -19.75 -0.07 -2.88 16 18 C 0.01 0.28 4.45 -20.01 -0.09 0.19 16 19 C -0.03 -0.92 6.35 22.56 0.14 -0.77 16 20 Cl -0.07 -2.23 28.04 -2.72 -0.08 -2.30 16 21 C -0.11 -3.03 9.82 22.26 0.22 -2.81 16 22 C -0.09 -2.10 10.04 22.31 0.22 -1.88 16 23 C -0.11 -3.03 9.82 22.26 0.22 -2.81 16 24 C -0.03 -0.92 6.35 22.57 0.14 -0.78 16 25 Cl -0.07 -2.22 28.04 -2.72 -0.08 -2.30 16 26 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.39 19.31 7.01 -92.71 -0.65 18.66 16 28 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -71.95 320.71 3.40 -68.55 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.20 Total: 31.61 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.25 Total: -7.87 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.45 Total: -97.99 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.07 Total: -34.65 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -4.45 SS G_CDS: -0.15 Total: -4.60 kcal Total: -71.95 3.40 -68.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336406179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.026 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds