Wall clock time and date at job start Tue Mar 31 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33389 * 125.20004 * 2 1 4 4 C 1.38419 * 114.91820 * 180.02562 * 3 2 1 5 5 C 1.33391 * 114.92198 * 359.97438 * 4 3 2 6 6 S 1.76202 * 125.20466 * 180.02562 * 5 4 3 7 7 O 1.42091 * 106.40599 * 203.52712 * 6 5 4 8 8 O 1.42106 * 106.40200 * 336.45144 * 6 5 4 9 9 N 1.65603 * 107.21555 * 89.98671 * 6 5 4 10 10 C 1.39076 * 120.00139 * 65.00090 * 9 6 5 11 11 C 1.38743 * 119.66005 * 179.72637 * 10 9 6 12 12 C 1.40780 * 118.66937 * 179.76119 * 11 10 9 13 13 C 1.41549 * 120.99242 * 180.26047 * 12 11 10 14 14 H 1.07998 * 119.99963 * 203.51551 * 13 12 11 15 15 C 1.40027 * 120.00068 * 23.51644 * 13 12 11 16 16 N 1.30745 * 120.00368 * 17.01496 * 15 13 12 17 17 Si 1.86800 * 120.00080 * 197.01432 * 15 13 12 18 18 H 1.48507 * 109.46901 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47272 * 119.99984 * 17 15 13 20 20 H 1.48498 * 109.47387 * 240.00054 * 17 15 13 21 21 C 1.41179 * 118.01193 * 0.49779 * 12 11 10 22 22 C 1.36562 * 119.14780 * 359.76297 * 21 12 11 23 23 N 1.32094 * 121.26762 * 359.97399 * 22 21 12 24 24 S 1.75878 * 109.59430 * 0.02562 * 5 4 3 25 25 H 1.08999 * 109.46717 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46512 * 299.99892 * 1 2 3 27 27 H 1.08992 * 109.47254 * 59.99888 * 1 2 3 28 28 H 1.08002 * 122.54371 * 359.97438 * 3 2 1 29 29 H 1.08003 * 122.53888 * 180.02562 * 4 3 2 30 30 H 0.97003 * 119.99902 * 244.99941 * 9 6 5 31 31 H 1.08004 * 120.66476 * 0.02562 * 11 10 9 32 32 H 0.97000 * 120.00507 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.42453 * 179.77657 * 21 12 11 34 34 H 1.08002 * 119.36234 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0005 6 16 5.6248 -1.0666 -0.0005 7 8 5.5616 -2.3777 -0.5445 8 8 6.4395 -0.0375 -0.5452 9 7 6.0839 -1.2383 1.5814 10 6 5.4380 -2.1616 2.3966 11 6 5.8322 -2.3037 3.7193 12 6 5.1607 -3.2409 4.5272 13 6 5.5188 -3.4221 5.8846 14 1 5.2938 -4.3536 6.3827 15 6 6.1646 -2.3937 6.5817 16 7 6.1444 -1.1732 6.1131 17 14 7.0551 -2.7653 8.1811 18 1 6.9303 -4.2119 8.4926 19 1 8.4904 -2.4104 8.0426 20 1 6.4522 -1.9690 9.2800 21 6 4.1230 -3.9981 3.9417 22 6 3.8088 -3.7925 2.6287 23 7 4.4561 -2.9005 1.9004 24 16 2.5210 -1.4371 -0.0004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8669 2.0895 -0.0004 29 1 4.3720 1.6351 -0.0002 30 1 6.8033 -0.6949 1.9394 31 1 6.6351 -1.7042 4.1222 32 1 6.5921 -0.4608 6.5958 33 1 3.5844 -4.7306 4.5247 34 1 3.0158 -4.3702 2.1772 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532163002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:27 Heat of formation + Delta-G solvation = -36.224074 kcal Electronic energy + Delta-G solvation = -22538.998593 eV Core-core repulsion = 19075.321096 eV Total energy + Delta-G solvation = -3463.677496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48184 -38.96099 -38.24567 -37.01579 -36.47343 -35.55861 -33.05131 -32.46722 -30.03645 -28.05831 -27.87556 -24.27503 -23.82615 -23.23513 -21.41608 -20.40168 -19.31590 -19.05078 -18.56588 -17.83290 -17.09343 -16.93324 -16.22989 -16.07252 -15.87428 -15.44521 -14.99121 -14.82389 -14.74787 -14.36161 -14.08116 -13.61382 -13.49584 -13.28730 -13.25895 -13.23541 -13.11931 -12.94223 -12.91484 -12.67827 -12.40162 -12.07905 -11.91999 -11.88088 -11.61464 -11.21485 -10.11673 -9.96481 -9.90313 -9.37488 -9.00533 -8.68970 -6.57217 -0.76293 -0.37316 0.54718 0.89994 0.95511 1.00578 1.41219 1.49806 1.54333 1.56426 1.91149 2.18726 2.58393 2.77737 3.51415 3.60323 3.74367 3.81369 4.25951 4.38838 4.53461 4.57324 4.72458 4.87196 4.89661 4.93358 5.06779 5.09108 5.10668 5.17288 5.29338 5.44424 5.55559 5.86072 5.95524 6.21971 6.56142 6.81003 6.82308 7.56659 8.23283 Molecular weight = 324.04amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.004340 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.148822 B = 6450.281913 C = 6937.410307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.153 4.153 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.811 4.811 6 S 2.739 3.261 7 O -0.964 6.964 8 O -0.978 6.978 9 N -1.028 6.028 10 C 0.355 3.645 11 C -0.262 4.262 12 C 0.119 3.881 13 C -0.479 4.479 14 H 0.086 0.914 15 C 0.040 3.960 16 N -0.808 5.808 17 Si 0.984 3.016 18 H -0.256 1.256 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.296 4.296 22 C 0.137 3.863 23 N -0.606 5.606 24 S 0.246 5.754 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.435 0.565 31 H 0.119 0.881 32 H 0.292 0.708 33 H 0.119 0.881 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 5.309 -6.275 11.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.274 4.274 3 C -0.215 4.215 4 C -0.037 4.037 5 C -1.016 5.016 6 S 2.830 3.170 7 O -0.954 6.954 8 O -0.969 6.969 9 N -0.779 5.779 10 C 0.128 3.872 11 C -0.290 4.290 12 C 0.110 3.890 13 C -0.510 4.510 14 H 0.104 0.896 15 C -0.178 4.178 16 N -0.433 5.433 17 Si 0.804 3.196 18 H -0.180 1.180 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.320 4.320 22 C -0.014 4.014 23 N -0.329 5.329 24 S 0.514 5.486 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.192 0.808 29 H 0.180 0.820 30 H 0.272 0.728 31 H 0.137 0.863 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.979 3.802 -7.980 11.908 hybrid contribution 0.991 1.842 2.126 2.982 sum -6.988 5.644 -5.854 10.722 Atomic orbital electron populations 1.20607 0.84733 1.04367 1.04970 1.25919 1.02572 0.97244 1.01648 1.20475 0.91852 1.01193 1.07966 1.20283 0.98309 0.93945 0.91197 1.35252 1.26598 1.08084 1.31651 1.00292 0.72631 0.72656 0.71428 1.93540 1.86793 1.38690 1.76359 1.93543 1.67275 1.59691 1.76373 1.53015 1.46283 1.47863 1.30706 1.17761 0.91698 0.89394 0.88310 1.21567 1.06787 1.08937 0.91677 1.18022 0.88355 0.89048 0.93558 1.19953 1.33983 1.01484 0.95550 0.89552 1.26812 0.94132 0.93630 1.03177 1.69814 1.32307 1.01496 1.39708 0.85120 0.78185 0.79988 0.76257 1.17967 1.19011 1.18993 1.21786 1.03623 1.08944 0.97613 1.21726 0.96276 0.92853 0.90570 1.66736 1.13130 1.13685 1.39324 1.84457 0.91359 1.05804 1.66946 0.90512 0.88688 0.87771 0.80796 0.81981 0.72781 0.86274 0.89667 0.86306 0.82156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.38 71.24 0.74 -0.63 16 2 C -0.15 -3.72 6.51 24.59 0.16 -3.56 16 3 C -0.19 -4.45 10.05 21.22 0.21 -4.24 16 4 C 0.00 -0.02 9.84 21.22 0.21 0.19 16 5 C -0.81 -27.98 6.22 66.72 0.42 -27.57 16 6 S 2.74 104.93 5.52 -56.49 -0.31 104.62 16 7 O -0.96 -42.51 16.78 -128.00 -2.15 -44.66 16 8 O -0.98 -37.69 17.80 -128.00 -2.28 -39.97 16 9 N -1.03 -40.77 5.85 -55.56 -0.32 -41.10 16 10 C 0.35 16.42 7.33 132.91 0.97 17.39 16 11 C -0.26 -13.14 8.63 23.01 0.20 -12.94 16 12 C 0.12 6.05 5.61 -21.12 -0.12 5.93 16 13 C -0.48 -23.94 9.12 23.52 0.21 -23.73 16 14 H 0.09 4.12 7.90 -2.91 -0.02 4.10 16 15 C 0.04 1.88 5.20 85.29 0.44 2.32 16 16 N -0.81 -38.96 10.91 21.84 0.24 -38.72 16 17 Si 0.98 35.24 29.59 68.60 2.03 37.27 16 18 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 19 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 20 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 21 C -0.30 -13.49 9.85 22.60 0.22 -13.27 16 22 C 0.14 5.85 11.10 84.26 0.94 6.79 16 23 N -0.61 -27.28 6.98 -194.47 -1.36 -28.64 16 24 S 0.25 7.86 21.85 -56.49 -1.23 6.62 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.43 15.03 8.82 -96.74 -0.85 14.18 16 31 H 0.12 6.09 6.19 -2.91 -0.02 6.07 16 32 H 0.29 12.61 8.29 -92.71 -0.77 11.84 16 33 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -65.63 324.29 -0.47 -66.10 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.31 Total: 31.78 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 4.61 Total: -53.30 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -1.44 Total: -108.46 kcal Atomic # 8 Polarization: -80.20 SS G_CDS: -4.43 Total: -84.63 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Atomic # 16 Polarization: 112.79 SS G_CDS: -1.55 Total: 111.24 kcal Total: -65.63 -0.47 -66.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532163002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.875 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds