Wall clock time and date at job start Tue Mar 31 2020 13:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36658 * 119.99738 * 2 1 4 4 H 1.08001 * 119.99834 * 161.20032 * 3 2 1 5 5 C 1.39172 * 120.00598 * 341.19737 * 3 2 1 6 6 N 1.31289 * 119.99701 * 343.81085 * 5 3 2 7 7 Si 1.86794 * 120.00380 * 163.80971 * 5 3 2 8 8 H 1.48499 * 109.47217 * 89.99932 * 7 5 3 9 9 H 1.48499 * 109.47129 * 210.00440 * 7 5 3 10 10 H 1.48501 * 109.47164 * 330.00133 * 7 5 3 11 11 C 1.34769 * 119.99767 * 179.97438 * 2 1 3 12 12 O 1.21640 * 120.00093 * 185.28966 * 11 2 1 13 13 C 1.47580 * 120.00485 * 5.29218 * 11 2 1 14 14 N 1.32412 * 120.59246 * 6.16145 * 13 11 2 15 15 C 1.32730 * 121.18797 * 179.66819 * 14 13 11 16 16 C 1.35450 * 122.12809 * 0.27251 * 15 14 13 17 17 N 1.36344 * 120.53185 * 359.97438 * 16 15 14 18 18 C 1.36173 * 133.92798 * 180.02562 * 17 16 15 19 19 Br 1.89101 * 126.43697 * 359.96680 * 18 17 16 20 20 C 1.35416 * 107.12572 * 180.02562 * 18 17 16 21 21 N 1.33605 * 108.60360 * 0.02562 * 20 18 17 22 22 C 1.31802 * 109.15330 * 0.02562 * 21 20 18 23 23 H 1.08999 * 109.47221 * 215.78652 * 1 2 3 24 24 H 1.09000 * 109.47418 * 335.79238 * 1 2 3 25 25 H 1.09008 * 109.47249 * 95.79153 * 1 2 3 26 26 H 0.96995 * 119.99683 * 179.97438 * 6 5 3 27 27 H 1.08003 * 118.93796 * 180.28883 * 15 14 13 28 28 H 1.07998 * 119.73515 * 180.02562 * 16 15 14 29 29 H 1.08004 * 125.69874 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1483 1.1835 0.0000 4 1 3.1851 1.2085 0.3014 5 6 1.5082 2.3567 -0.3884 6 7 0.3743 2.2984 -1.0477 7 14 2.2621 4.0141 0.0282 8 1 3.1663 4.4371 -1.0712 9 1 1.1832 5.0204 0.1967 10 1 3.0364 3.9025 1.2905 11 6 2.1388 -1.1672 0.0005 12 8 3.3513 -1.1694 0.0976 13 6 1.4057 -2.4426 -0.1168 14 7 0.1014 -2.4517 -0.3447 15 6 -0.5686 -3.5918 -0.4588 16 6 0.0373 -4.7978 -0.3442 17 7 1.3770 -4.8800 -0.1046 18 6 2.2462 -5.9159 0.0557 19 35 1.8229 -7.7577 -0.0101 20 6 3.4705 -5.3793 0.2723 21 7 3.3627 -4.0478 0.2475 22 6 2.1062 -3.7198 0.0221 23 1 -0.3633 -0.8336 0.6009 24 1 -0.3634 0.9373 0.4214 25 1 -0.3634 -0.1037 -1.0225 26 1 -0.0720 3.1160 -1.3181 27 1 -1.6311 -3.5568 -0.6494 28 1 -0.5454 -5.7016 -0.4443 29 1 4.3817 -5.9348 0.4383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769745070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:39 Heat of formation + Delta-G solvation = 86.874530 kcal Electronic energy + Delta-G solvation = -19096.996064 eV Core-core repulsion = 15875.891917 eV Total energy + Delta-G solvation = -3221.104147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 323.996 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.14391 -40.60803 -39.18823 -36.77858 -35.49699 -33.77540 -33.03721 -31.55953 -29.83338 -28.34979 -27.26501 -25.57005 -24.32510 -23.33067 -21.48143 -19.60032 -19.11911 -18.74793 -17.55350 -17.18163 -16.82615 -16.43995 -16.15578 -15.87520 -15.43277 -14.92979 -14.86377 -14.14430 -14.04543 -13.72677 -13.43016 -13.13441 -12.79080 -12.64062 -12.45123 -12.12924 -12.08541 -12.00246 -11.22857 -11.15793 -10.86441 -10.39402 -10.07675 -9.80231 -9.26875 -8.49635 -5.98920 -1.01294 -0.13913 -0.09924 1.32525 1.36999 1.43735 1.57193 1.58108 1.79520 2.18530 2.49752 2.57270 2.98322 3.06983 3.18684 3.28003 3.66971 4.00443 4.12295 4.19090 4.58746 4.82638 4.97824 5.14195 5.21120 5.34823 5.43986 5.51730 5.93981 6.32132 6.45032 6.62608 7.03161 7.25539 7.92279 8.49774 Molecular weight = 324.00amu Principal moments of inertia in cm(-1) A = 0.041567 B = 0.003364 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.455726 B = 8322.011256 C = 8944.836446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.408 5.408 3 C -0.338 4.338 4 H 0.084 0.916 5 C 0.004 3.996 6 N -0.864 5.864 7 Si 1.000 3.000 8 H -0.271 1.271 9 H -0.259 1.259 10 H -0.269 1.269 11 C 0.449 3.551 12 O -0.613 6.613 13 C 0.170 3.830 14 N -0.440 5.440 15 C 0.043 3.957 16 C 0.011 3.989 17 N -0.336 5.336 18 C -0.077 4.077 19 Br 0.070 6.930 20 C 0.064 3.936 21 N -0.481 5.481 22 C 0.191 3.809 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.284 0.716 27 H 0.232 0.768 28 H 0.218 0.782 29 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -19.608 1.136 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.122 5.122 3 C -0.467 4.467 4 H 0.102 0.898 5 C -0.202 4.202 6 N -0.500 5.500 7 Si 0.821 3.179 8 H -0.196 1.196 9 H -0.183 1.183 10 H -0.193 1.193 11 C 0.239 3.761 12 O -0.500 6.500 13 C 0.009 3.991 14 N -0.157 5.157 15 C -0.098 4.098 16 C -0.114 4.114 17 N -0.011 5.011 18 C -0.270 4.270 19 Br 0.152 6.848 20 C -0.092 4.092 21 N -0.201 5.201 22 C -0.058 4.058 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.248 0.752 28 H 0.234 0.766 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.769 -18.928 1.068 20.130 hybrid contribution 0.292 -0.133 -0.068 0.328 sum -6.478 -19.060 1.000 20.156 Atomic orbital electron populations 1.21837 0.77716 1.00531 1.01308 1.43879 1.07964 1.04253 1.56140 1.19939 0.98013 0.84528 1.44186 0.89830 1.26324 0.96695 1.03236 0.93961 1.70062 1.17240 1.31324 1.31336 0.84857 0.78326 0.75674 0.79025 1.19643 1.18312 1.19299 1.17529 0.86724 0.83016 0.88817 1.90664 1.14207 1.86280 1.58836 1.22162 0.89120 0.89876 0.97919 1.68822 1.04953 1.30695 1.11235 1.23133 1.03343 0.84646 0.98703 1.23445 0.80879 1.03956 1.03159 1.42873 1.08661 1.06987 1.42553 1.23143 0.91922 0.88846 1.23071 1.96756 1.94384 0.95522 1.98128 1.23408 0.97512 0.88948 0.99373 1.70736 1.15335 1.14147 1.19875 1.22468 0.88503 0.87678 1.07132 0.90753 0.92148 0.93117 0.90524 0.75210 0.76554 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.02 7.45 127.77 0.95 6.97 15 2 N -0.41 -22.48 3.01 -662.52 -1.99 -24.47 15 3 C -0.34 -19.46 9.36 84.17 0.79 -18.67 15 4 H 0.08 5.13 7.33 -2.91 -0.02 5.11 15 5 C 0.00 0.20 4.99 85.00 0.42 0.62 15 6 N -0.86 -44.17 10.69 21.70 0.23 -43.93 15 7 Si 1.00 40.82 29.58 68.60 2.03 42.85 15 8 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 9 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 11 C 0.45 25.06 7.60 86.71 0.66 25.71 15 12 O -0.61 -38.66 15.90 -4.16 -0.07 -38.73 15 13 C 0.17 7.69 6.77 43.63 0.30 7.99 15 14 N -0.44 -16.05 6.34 -181.43 -1.15 -17.20 15 15 C 0.04 1.03 11.01 83.91 0.92 1.95 15 16 C 0.01 0.24 10.98 83.35 0.92 1.16 15 17 N -0.34 -10.32 2.96 -341.58 -1.01 -11.33 15 18 C -0.08 -2.07 7.50 83.37 0.63 -1.45 15 19 Br 0.07 1.21 34.09 -20.37 -0.69 0.52 15 20 C 0.06 2.01 11.81 83.77 0.99 2.99 15 21 N -0.48 -20.80 10.75 -189.45 -2.04 -22.84 15 22 C 0.19 7.98 7.67 135.60 1.04 9.02 15 23 H 0.07 3.09 5.81 -2.39 -0.01 3.08 15 24 H 0.06 2.91 6.37 -2.39 -0.02 2.89 15 25 H 0.05 2.41 7.86 -2.38 -0.02 2.39 15 26 H 0.28 13.25 8.31 -92.71 -0.77 12.48 15 27 H 0.23 3.02 8.06 -2.91 -0.02 2.99 15 28 H 0.22 2.56 8.06 -2.91 -0.02 2.54 15 29 H 0.22 5.00 8.06 -2.91 -0.02 4.98 15 Total: -1.00 -76.05 279.61 4.13 -71.91 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.21 Total: 6.92 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 7.61 Total: 36.31 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -5.96 Total: -119.78 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.07 Total: -38.73 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 35 Polarization: 1.21 SS G_CDS: -0.69 Total: 0.52 kcal Total: -76.05 4.13 -71.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769745070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.789 kcal (2) G-P(sol) polarization free energy of solvation -76.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds