Wall clock time and date at job start Tue Mar 31 2020 13:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00393 * 2 1 4 4 H 1.48505 * 109.47172 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47617 * 119.99576 * 3 2 1 7 7 C 1.37879 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47257 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46979 * 180.02562 * 10 9 7 12 12 S 1.65600 * 119.99823 * 164.99925 * 11 10 9 13 13 O 1.42097 * 106.40403 * 311.45646 * 12 11 10 14 14 O 1.42108 * 106.40080 * 178.53826 * 12 11 10 15 15 C 1.76196 * 107.22215 * 65.00037 * 12 11 10 16 16 C 1.38588 * 120.41991 * 114.99331 * 15 12 11 17 17 C 1.38773 * 118.42743 * 180.02562 * 16 15 12 18 18 Cl 1.73605 * 120.41937 * 179.97438 * 17 16 15 19 19 C 1.38315 * 119.16641 * 0.02562 * 17 16 15 20 20 N 1.31872 * 120.75801 * 359.97438 * 19 17 16 21 21 C 1.31972 * 121.71979 * 359.97438 * 20 19 17 22 22 Cl 1.73601 * 119.61498 * 180.02562 * 21 20 19 23 23 H 0.97004 * 119.99377 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46966 * 59.99513 * 9 7 2 25 25 H 1.09004 * 109.46611 * 300.00276 * 9 7 2 26 26 H 1.09001 * 109.47497 * 59.99879 * 10 9 7 27 27 H 1.09008 * 109.47135 * 299.99532 * 10 9 7 28 28 H 0.96998 * 120.00363 * 345.00256 * 11 10 9 29 29 H 1.07996 * 120.78637 * 0.05478 * 16 15 12 30 30 H 1.07996 * 119.61871 * 179.72352 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 16 2.2983 -6.3404 -0.3714 13 8 3.0284 -6.0906 -1.5646 14 8 1.3363 -7.3795 -0.2521 15 6 3.4927 -6.6206 0.8932 16 6 3.3799 -7.7159 1.7348 17 6 4.3435 -7.8965 2.7169 18 17 4.2522 -9.2504 3.7997 19 6 5.3771 -6.9835 2.8231 20 7 5.4528 -5.9523 2.0046 21 6 4.5551 -5.7499 1.0587 22 17 4.7083 -4.3744 0.0107 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8896 28 1 0.5673 -4.9452 0.2170 29 1 2.5617 -8.4127 1.6285 30 1 6.1285 -7.1145 3.5876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867090084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:58 Heat of formation + Delta-G solvation = -40.117981 kcal Electronic energy + Delta-G solvation = -20661.417938 eV Core-core repulsion = 17057.261939 eV Total energy + Delta-G solvation = -3604.155999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 323.989 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77045 -37.59125 -37.16231 -36.87220 -35.85985 -35.52387 -33.32839 -32.80797 -31.49029 -29.24063 -24.94375 -24.61525 -24.23211 -21.41717 -19.73704 -18.66330 -17.92888 -17.34682 -17.11753 -16.35630 -15.88556 -15.75099 -15.07421 -14.59921 -14.34899 -14.10706 -13.92728 -13.64815 -13.03162 -12.71900 -12.18395 -12.11449 -11.97853 -11.93978 -11.85372 -11.73765 -11.49697 -11.13876 -10.86155 -10.82870 -10.60807 -10.43862 -10.16869 -9.60215 -9.38225 -9.27690 -8.94458 -8.43908 -6.11184 -4.14868 -0.14852 0.30757 0.39055 1.20333 1.53974 2.71156 3.06323 3.29112 3.33759 3.36455 3.58622 3.87301 4.01345 4.05049 4.38232 4.39017 4.62569 4.93461 5.17895 5.25873 5.52777 5.60328 6.04130 6.30875 6.62260 6.92517 7.24863 7.49906 7.58491 7.86136 8.23440 8.90191 9.50055 11.00115 Molecular weight = 323.99amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003953 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.482764 B = 7081.493093 C = 7610.654399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.108 3.892 11 N -1.100 6.100 12 S 2.693 3.307 13 O -0.935 6.935 14 O -0.960 6.960 15 C -0.708 4.708 16 C 0.045 3.955 17 C -0.116 4.116 18 Cl -0.036 7.036 19 C 0.182 3.818 20 N -0.471 5.471 21 C 0.258 3.742 22 Cl 0.037 6.963 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.421 0.579 29 H 0.174 0.826 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -16.957 6.177 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.021 4.021 10 C -0.017 4.017 11 N -0.864 5.864 12 S 2.775 3.225 13 O -0.925 6.925 14 O -0.949 6.949 15 C -0.792 4.792 16 C 0.018 3.982 17 C -0.146 4.146 18 Cl -0.007 7.007 19 C 0.024 3.976 20 N -0.182 5.182 21 C 0.093 3.907 22 Cl 0.067 6.933 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.257 0.743 29 H 0.192 0.808 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.862 -16.775 5.535 19.763 hybrid contribution -0.155 0.531 0.857 1.020 sum 8.707 -16.243 6.392 19.507 Atomic orbital electron populations 1.69943 1.06072 1.27028 1.49988 1.24975 0.94867 0.99314 0.94934 0.86619 0.79595 0.82817 0.78799 1.20052 1.21209 1.20096 1.21002 0.93095 0.90395 1.51875 0.92366 1.19333 0.93992 0.90435 0.98369 1.22408 0.96150 0.82616 1.00485 1.55446 1.21458 1.21739 1.87765 1.02257 0.73293 0.73000 0.73901 1.93648 1.73386 1.84791 1.40630 1.93574 1.59088 1.55565 1.86716 1.32162 1.18547 1.04574 1.23960 1.21335 0.95938 0.93164 0.87797 1.22105 0.99995 0.94860 0.97683 1.98409 1.98003 1.42240 1.62076 1.23094 0.94227 0.86091 0.94218 1.67485 1.26451 1.20036 1.04241 1.21681 0.89198 0.89279 0.90548 1.98588 1.96795 1.37865 1.60086 0.92727 0.95398 0.95646 0.92305 0.90945 0.74276 0.80841 0.80044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.42 5.11 -27.88 -0.14 0.28 16 10 C 0.11 2.05 4.05 -4.04 -0.02 2.04 16 11 N -1.10 -17.42 6.00 -10.61 -0.06 -17.49 16 12 S 2.69 40.23 5.44 -107.50 -0.58 39.64 16 13 O -0.93 -16.21 15.99 -57.17 -0.91 -17.13 16 14 O -0.96 -14.83 17.05 -57.17 -0.97 -15.80 16 15 C -0.71 -9.50 5.91 -39.41 -0.23 -9.74 16 16 C 0.04 0.49 9.47 -39.25 -0.37 0.12 16 17 C -0.12 -1.14 6.34 -39.36 -0.25 -1.39 16 18 Cl -0.04 -0.29 28.99 -51.86 -1.50 -1.79 16 19 C 0.18 1.81 10.99 -17.51 -0.19 1.62 16 20 N -0.47 -6.17 10.34 -10.33 -0.11 -6.28 16 21 C 0.26 3.73 7.07 -17.45 -0.12 3.61 16 22 Cl 0.04 0.60 20.81 -51.86 -1.08 -0.48 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.07 6.15 -51.93 -0.32 0.75 16 27 H 0.07 1.40 5.92 -51.92 -0.31 1.09 16 28 H 0.42 5.97 8.65 -34.47 -0.30 5.68 16 29 H 0.17 1.60 7.44 -52.49 -0.39 1.21 16 30 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 300.81 15.07 4.53 4.53 Total: -1.00 -31.32 300.81 -8.84 -40.17 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -2.12 Total: -0.26 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.74 Total: -16.14 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.57 Total: -48.59 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.89 Total: -32.93 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 40.23 SS G_CDS: -0.58 Total: 39.64 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -2.58 Total: -2.28 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.32 -8.84 -40.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867090084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.047 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds