Wall clock time and date at job start Tue Mar 31 2020 13:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00393 * 2 1 4 4 H 1.48505 * 109.47172 * 239.99823 * 3 2 1 5 5 H 1.48504 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47617 * 119.99576 * 3 2 1 7 7 C 1.37879 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00452 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47257 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46979 * 180.02562 * 10 9 7 12 12 S 1.65600 * 119.99823 * 164.99925 * 11 10 9 13 13 O 1.42097 * 106.40403 * 311.45646 * 12 11 10 14 14 O 1.42108 * 106.40080 * 178.53826 * 12 11 10 15 15 C 1.76196 * 107.22215 * 65.00037 * 12 11 10 16 16 C 1.38588 * 120.41991 * 114.99331 * 15 12 11 17 17 C 1.38773 * 118.42743 * 180.02562 * 16 15 12 18 18 Cl 1.73605 * 120.41937 * 179.97438 * 17 16 15 19 19 C 1.38315 * 119.16641 * 0.02562 * 17 16 15 20 20 N 1.31872 * 120.75801 * 359.97438 * 19 17 16 21 21 C 1.31972 * 121.71979 * 359.97438 * 20 19 17 22 22 Cl 1.73601 * 119.61498 * 180.02562 * 21 20 19 23 23 H 0.97004 * 119.99377 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46966 * 59.99513 * 9 7 2 25 25 H 1.09004 * 109.46611 * 300.00276 * 9 7 2 26 26 H 1.09001 * 109.47497 * 59.99879 * 10 9 7 27 27 H 1.09008 * 109.47135 * 299.99532 * 10 9 7 28 28 H 0.96998 * 120.00363 * 345.00256 * 11 10 9 29 29 H 1.07996 * 120.78637 * 0.05478 * 16 15 12 30 30 H 1.07996 * 119.61871 * 179.72352 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 16 2.2983 -6.3404 -0.3714 13 8 3.0284 -6.0906 -1.5646 14 8 1.3363 -7.3795 -0.2521 15 6 3.4927 -6.6206 0.8932 16 6 3.3799 -7.7159 1.7348 17 6 4.3435 -7.8965 2.7169 18 17 4.2522 -9.2504 3.7997 19 6 5.3771 -6.9835 2.8231 20 7 5.4528 -5.9523 2.0046 21 6 4.5551 -5.7499 1.0587 22 17 4.7083 -4.3744 0.0107 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5566 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8896 28 1 0.5673 -4.9452 0.2170 29 1 2.5617 -8.4127 1.6285 30 1 6.1285 -7.1145 3.5876 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867090084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:58 Heat of formation + Delta-G solvation = -63.357469 kcal Electronic energy + Delta-G solvation = -20662.425678 eV Core-core repulsion = 17057.261939 eV Total energy + Delta-G solvation = -3605.163739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 323.989 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70062 -38.75567 -38.18628 -37.83008 -37.14347 -37.04931 -34.75152 -34.26916 -32.41046 -31.04715 -26.49907 -25.85523 -25.18634 -23.18413 -20.92478 -19.79436 -19.02047 -18.56114 -18.22335 -18.06061 -17.25037 -16.69422 -16.48838 -16.09465 -15.71735 -15.51557 -15.02923 -14.50497 -14.48344 -14.01746 -13.63868 -13.48093 -13.38343 -13.27478 -13.04315 -12.91052 -12.66637 -12.53523 -12.49768 -12.31428 -12.17547 -11.80620 -11.31965 -11.21188 -11.07927 -10.63549 -10.43074 -10.18275 -8.19267 -6.29153 -1.12206 -0.83259 -0.55340 0.19639 0.69523 1.44130 1.45880 1.53312 1.69101 1.94283 2.41430 2.43999 2.93436 3.01718 3.16030 3.24238 3.47558 3.62663 3.93710 4.12046 4.37063 4.45629 4.71921 4.75445 4.92985 5.49601 5.63202 5.81114 5.98000 6.01092 6.22649 6.85469 7.39801 8.92469 Molecular weight = 323.99amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003953 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.482764 B = 7081.493093 C = 7610.654399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.019 3.981 10 C 0.124 3.876 11 N -1.102 6.102 12 S 2.712 3.288 13 O -0.961 6.961 14 O -0.963 6.963 15 C -0.713 4.713 16 C 0.043 3.957 17 C -0.107 4.107 18 Cl -0.012 7.012 19 C 0.189 3.811 20 N -0.486 5.486 21 C 0.245 3.755 22 Cl 0.011 6.989 23 H 0.264 0.736 24 H 0.005 0.995 25 H 0.011 0.989 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.427 0.573 29 H 0.192 0.808 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.579 -18.162 7.691 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.020 4.020 10 C -0.001 4.001 11 N -0.866 5.866 12 S 2.798 3.202 13 O -0.951 6.951 14 O -0.953 6.953 15 C -0.800 4.800 16 C 0.016 3.984 17 C -0.137 4.137 18 Cl 0.017 6.983 19 C 0.032 3.968 20 N -0.198 5.198 21 C 0.079 3.921 22 Cl 0.040 6.960 23 H 0.073 0.927 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.264 0.736 29 H 0.210 0.790 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.200 -17.989 7.034 21.843 hybrid contribution -0.539 0.705 0.520 1.029 sum 9.661 -17.284 7.554 21.193 Atomic orbital electron populations 1.70065 1.07600 1.27864 1.51267 1.25837 0.95676 1.02955 0.94674 0.85609 0.78397 0.78525 0.79229 1.19365 1.21001 1.19059 1.21474 0.93737 0.91691 1.51083 0.91705 1.19214 0.94417 0.91854 0.96509 1.22060 0.94885 0.82206 1.00971 1.55309 1.22001 1.21193 1.88050 1.01440 0.72971 0.72239 0.73587 1.93615 1.73828 1.84994 1.42687 1.93565 1.59596 1.55224 1.86944 1.31753 1.18018 1.05809 1.24463 1.21616 0.96793 0.92539 0.87465 1.22164 0.99146 0.95221 0.97196 1.98430 1.97885 1.40891 1.61052 1.23755 0.94684 0.84668 0.93706 1.67482 1.26352 1.21420 1.04524 1.21617 0.90192 0.89069 0.91189 1.98568 1.96911 1.39391 1.61145 0.92721 0.97676 0.97035 0.91218 0.91229 0.73565 0.79043 0.76227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.54 -29.09 9.11 25.60 0.23 -28.86 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.02 0.92 5.11 29.85 0.15 1.08 16 10 C 0.12 4.79 4.05 86.38 0.35 5.14 16 11 N -1.10 -35.13 6.00 -187.49 -1.12 -36.26 16 12 S 2.71 79.85 5.44 -56.49 -0.31 79.54 16 13 O -0.96 -33.48 15.99 -128.00 -2.05 -35.53 16 14 O -0.96 -28.75 17.05 -128.00 -2.18 -30.93 16 15 C -0.71 -18.24 5.91 22.38 0.13 -18.11 16 16 C 0.04 0.84 9.47 22.48 0.21 1.06 16 17 C -0.11 -1.77 6.34 22.42 0.14 -1.63 16 18 Cl -0.01 -0.15 28.99 -2.72 -0.08 -0.22 16 19 C 0.19 3.17 10.99 84.71 0.93 4.10 16 20 N -0.49 -11.82 10.34 -186.60 -1.93 -13.75 16 21 C 0.24 6.82 7.07 84.70 0.60 7.42 16 22 Cl 0.01 0.34 20.81 -2.72 -0.06 0.28 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 2.54 6.15 -2.39 -0.01 2.53 16 27 H 0.07 2.75 5.92 -2.38 -0.01 2.73 16 28 H 0.43 12.28 8.65 -96.75 -0.84 11.45 16 29 H 0.19 3.02 7.44 -2.91 -0.02 3.00 16 30 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -67.04 300.81 -1.82 -68.86 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.38 Total: 5.97 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 3.21 Total: -28.94 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -2.77 Total: -103.88 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -4.23 Total: -66.46 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 79.85 SS G_CDS: -0.31 Total: 79.54 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.14 Total: 0.06 kcal Total: -67.04 -1.82 -68.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867090084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.502 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds