Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47156 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46915 * 120.00024 * 9 7 5 12 12 H 1.48491 * 109.47319 * 240.00168 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.37661 * 120.00109 * 85.00064 * 13 3 2 15 15 N 1.30850 * 124.96259 * 180.02562 * 14 13 3 16 16 C 1.36141 * 108.69773 * 179.97438 * 15 14 13 17 17 C 1.39544 * 133.65774 * 180.02562 * 16 15 14 18 18 C 1.37850 * 119.72641 * 179.97438 * 17 16 15 19 19 Br 1.89103 * 119.81960 * 179.97438 * 18 17 16 20 20 C 1.38719 * 120.36542 * 359.97438 * 18 17 16 21 21 C 1.38016 * 120.45314 * 0.02562 * 20 18 17 22 22 C 1.38541 * 119.91572 * 359.97438 * 21 20 18 23 23 O 1.34458 * 124.95150 * 359.70071 * 14 13 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 31 31 H 1.08003 * 120.14145 * 359.94141 * 17 16 15 32 32 H 1.08003 * 119.77247 * 179.97438 * 20 18 17 33 33 H 1.08008 * 120.04943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5454 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4627 13 7 1.6524 2.0975 -1.2517 14 6 0.4091 2.6765 -1.3694 15 7 -0.0367 3.2847 -2.4388 16 6 -1.2996 3.7298 -2.1933 17 6 -2.2396 4.4281 -2.9523 18 6 -3.4657 4.7390 -2.4046 19 35 -4.7412 5.6858 -3.4306 20 6 -3.7692 4.3612 -1.1048 21 6 -2.8480 3.6703 -0.3440 22 6 -1.6110 3.3499 -0.8793 23 8 -0.5269 2.6942 -0.4042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -2.0072 4.7242 -3.9647 32 1 -4.7327 4.6102 -0.6850 33 1 -3.0910 3.3797 0.6675 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893186708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = 39.206463 kcal Electronic energy + Delta-G solvation = -19112.101060 eV Core-core repulsion = 15992.470214 eV Total energy + Delta-G solvation = -3119.630846 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.79858 -38.11323 -36.51065 -34.37011 -32.85274 -31.86290 -31.19415 -29.70796 -28.46924 -26.89601 -23.48974 -22.86234 -22.24796 -21.50233 -20.14796 -17.69875 -17.48565 -16.95302 -16.58027 -15.98625 -15.13144 -14.80263 -14.19030 -14.01183 -13.62896 -13.23732 -12.93783 -12.70089 -12.27967 -12.03609 -11.63837 -11.47294 -11.37339 -11.08989 -11.02365 -10.76950 -10.43737 -10.41822 -10.35830 -9.98527 -9.91709 -9.46408 -9.12549 -8.65259 -8.54258 -7.24865 -6.34437 -4.44953 0.99247 1.15923 1.52398 2.51198 2.92289 3.13472 3.22279 3.25198 3.72114 3.72880 4.20352 4.64319 4.98090 5.02405 5.07919 5.14704 5.47551 5.61526 6.04329 6.04849 6.07611 6.12074 6.26631 6.32272 6.35891 6.54450 6.69183 6.76815 6.96389 7.15381 7.34808 7.46849 7.57384 7.87601 8.12365 8.37030 8.64852 9.23096 10.71208 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.002731 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.473975 B =10249.556576 C =10527.903075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.270 3.730 4 H 0.047 0.953 5 C -0.537 4.537 6 H 0.068 0.932 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.907 3.093 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.646 5.646 14 C 0.534 3.466 15 N -0.576 5.576 16 C 0.087 3.913 17 C -0.067 4.067 18 C -0.080 4.080 19 Br -0.053 7.053 20 C -0.108 4.108 21 C -0.067 4.067 22 C -0.008 4.008 23 O -0.221 6.221 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.424 0.576 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 7.130 -6.927 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.576 4.576 6 H 0.086 0.914 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.734 3.266 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.289 5.289 14 C 0.232 3.768 15 N -0.321 5.321 16 C -0.028 4.028 17 C -0.090 4.090 18 C -0.161 4.161 19 Br 0.033 6.967 20 C -0.129 4.129 21 C -0.086 4.086 22 C -0.060 4.060 23 O -0.113 6.113 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.264 0.736 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.782 7.328 -7.417 18.089 hybrid contribution 1.187 -0.432 0.789 1.489 sum -13.595 6.897 -6.629 16.623 Atomic orbital electron populations 1.21872 0.98769 0.99504 1.00185 1.22053 0.92257 0.99612 1.03398 1.19129 0.95709 0.89277 0.78988 0.93483 1.21143 0.89754 1.39800 1.06871 0.91389 1.24871 0.99162 0.94316 0.95091 1.69866 1.35453 1.37142 1.09375 0.86297 0.84019 0.77967 0.78339 1.19521 1.20715 1.20673 1.44749 1.07479 1.56401 1.20311 1.21887 0.85805 0.88563 0.80560 1.71184 1.10385 1.26365 1.24138 1.19572 0.92069 0.98835 0.92321 1.19920 0.90225 0.98846 1.00006 1.21310 0.94575 1.04420 0.95748 1.96667 1.54917 1.74081 1.71078 1.20621 0.99766 1.00274 0.92267 1.19722 0.88701 0.99609 1.00608 1.20114 0.89841 1.00958 0.95089 1.84629 1.22013 1.63893 1.40725 0.94325 0.93211 0.95030 0.87412 0.94017 0.92269 0.73572 0.84403 0.84106 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.55 37.16 0.32 -2.55 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.16 2.29 -69.08 -0.16 6.01 16 4 H 0.05 1.20 7.82 -51.93 -0.41 0.79 16 5 C -0.54 -13.17 8.73 -34.44 -0.30 -13.47 16 6 H 0.07 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -22.79 11.29 55.43 0.63 -22.17 16 9 Si 0.91 19.50 29.54 -169.99 -5.02 14.48 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.65 -13.01 5.13 -57.04 -0.29 -13.30 16 14 C 0.53 10.67 7.25 -87.64 -0.64 10.03 16 15 N -0.58 -11.25 11.39 -12.13 -0.14 -11.39 16 16 C 0.09 1.55 7.23 -84.70 -0.61 0.93 16 17 C -0.07 -0.99 9.83 -39.24 -0.39 -1.38 16 18 C -0.08 -1.02 6.22 -39.55 -0.25 -1.27 16 19 Br -0.05 -0.56 33.68 -68.01 -2.29 -2.85 16 20 C -0.11 -1.29 9.76 -39.49 -0.39 -1.68 16 21 C -0.07 -0.91 10.06 -39.55 -0.40 -1.30 16 22 C -0.01 -0.13 7.42 -38.70 -0.29 -0.42 16 23 O -0.22 -4.34 7.96 2.42 0.02 -4.32 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 26 H 0.03 0.62 5.62 -51.93 -0.29 0.32 16 27 H 0.11 2.62 5.95 -51.93 -0.31 2.31 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 30 H 0.42 7.85 8.66 -40.82 -0.35 7.50 16 31 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -25.80 300.80 -9.32 -35.12 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.42 Total: 6.44 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.33 Total: -6.53 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.20 Total: -46.86 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.02 Total: -4.32 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.80 -9.32 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893186708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.322 kcal (2) G-P(sol) polarization free energy of solvation -25.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds