Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47156 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46915 * 120.00024 * 9 7 5 12 12 H 1.48491 * 109.47319 * 240.00168 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.37661 * 120.00109 * 85.00064 * 13 3 2 15 15 N 1.30850 * 124.96259 * 180.02562 * 14 13 3 16 16 C 1.36141 * 108.69773 * 179.97438 * 15 14 13 17 17 C 1.39544 * 133.65774 * 180.02562 * 16 15 14 18 18 C 1.37850 * 119.72641 * 179.97438 * 17 16 15 19 19 Br 1.89103 * 119.81960 * 179.97438 * 18 17 16 20 20 C 1.38719 * 120.36542 * 359.97438 * 18 17 16 21 21 C 1.38016 * 120.45314 * 0.02562 * 20 18 17 22 22 C 1.38541 * 119.91572 * 359.97438 * 21 20 18 23 23 O 1.34458 * 124.95150 * 359.70071 * 14 13 3 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 29 29 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 31 31 H 1.08003 * 120.14145 * 359.94141 * 17 16 15 32 32 H 1.08003 * 119.77247 * 179.97438 * 20 18 17 33 33 H 1.08008 * 120.04943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5454 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4627 13 7 1.6524 2.0975 -1.2517 14 6 0.4091 2.6765 -1.3694 15 7 -0.0367 3.2847 -2.4388 16 6 -1.2996 3.7298 -2.1933 17 6 -2.2396 4.4281 -2.9523 18 6 -3.4657 4.7390 -2.4046 19 35 -4.7412 5.6858 -3.4306 20 6 -3.7692 4.3612 -1.1048 21 6 -2.8480 3.6703 -0.3440 22 6 -1.6110 3.3499 -0.8793 23 8 -0.5269 2.6942 -0.4042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0618 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -2.0072 4.7242 -3.9647 32 1 -4.7327 4.6102 -0.6850 33 1 -3.0910 3.3797 0.6675 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893186708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = 23.538306 kcal Electronic energy + Delta-G solvation = -19112.780482 eV Core-core repulsion = 15992.470214 eV Total energy + Delta-G solvation = -3120.310268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.16176 -39.34890 -38.10991 -35.80026 -34.57310 -33.04515 -32.73947 -30.90594 -29.80440 -28.52555 -25.22578 -24.14510 -23.58639 -22.85605 -21.81607 -19.30889 -18.82821 -18.37612 -18.00764 -17.46299 -16.87767 -16.01843 -15.80831 -15.16019 -15.01116 -14.72920 -14.54884 -13.96558 -13.77035 -13.33961 -13.24861 -13.08975 -12.84238 -12.70176 -12.56133 -12.14069 -12.10343 -11.83275 -11.64997 -11.42165 -11.27472 -11.18269 -10.71218 -10.42057 -9.66443 -8.67170 -8.23563 -6.40230 -0.18672 -0.02373 0.50081 1.12620 1.43250 1.46602 1.54961 1.57207 2.25236 2.46127 2.50920 3.07263 3.45368 3.75224 3.98266 4.08955 4.28618 4.37826 4.39969 4.42034 4.61534 4.81003 4.95674 5.04709 5.06812 5.15402 5.16389 5.24433 5.38995 5.47562 5.58055 5.68947 5.85803 6.07361 6.50843 6.63201 7.00325 7.31660 8.81826 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.041814 B = 0.002731 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.473975 B =10249.556576 C =10527.903075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.283 3.717 4 H 0.013 0.987 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.651 5.651 14 C 0.519 3.481 15 N -0.585 5.585 16 C 0.054 3.946 17 C -0.069 4.069 18 C -0.080 4.080 19 Br -0.024 7.024 20 C -0.086 4.086 21 C -0.067 4.067 22 C -0.031 4.031 23 O -0.236 6.236 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.268 0.732 30 H 0.429 0.571 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 7.947 -7.429 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.180 3.820 4 H 0.031 0.969 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.295 5.295 14 C 0.217 3.783 15 N -0.329 5.329 16 C -0.060 4.060 17 C -0.091 4.091 18 C -0.161 4.161 19 Br 0.062 6.938 20 C -0.107 4.107 21 C -0.087 4.087 22 C -0.082 4.082 23 O -0.128 6.128 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.270 0.730 31 H 0.165 0.835 32 H 0.197 0.803 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.528 8.175 -7.948 20.080 hybrid contribution 1.463 -0.537 0.870 1.785 sum -15.066 7.638 -7.079 18.314 Atomic orbital electron populations 1.21715 0.96977 1.00538 0.99697 1.21893 0.93806 0.98758 1.02170 1.18741 0.94765 0.89407 0.79070 0.96890 1.21459 0.90818 1.39656 1.07055 0.91157 1.25625 1.03094 0.94038 0.94839 1.69981 1.36974 1.37794 1.09800 0.85345 0.79242 0.77911 0.78165 1.18970 1.20789 1.20317 1.44361 1.08143 1.57432 1.19607 1.21869 0.85876 0.89503 0.81088 1.71087 1.11617 1.26083 1.24155 1.19868 0.92046 1.00734 0.93376 1.20123 0.90425 0.98271 1.00281 1.21579 0.94390 1.03681 0.96431 1.96713 1.53294 1.73287 1.70553 1.21117 1.00478 0.97616 0.91445 1.20165 0.87372 0.99208 1.01946 1.20667 0.90463 1.01666 0.95439 1.84586 1.22705 1.64500 1.41053 0.92393 0.93992 0.95144 0.89743 0.93881 0.92221 0.73017 0.83549 0.80324 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.55 71.98 0.62 -4.62 16 2 C -0.13 -5.72 5.45 30.60 0.17 -5.55 16 3 C 0.28 13.37 2.29 44.25 0.10 13.47 16 4 H 0.01 0.71 7.82 -2.39 -0.02 0.69 16 5 C -0.55 -27.64 8.73 25.60 0.22 -27.42 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.03 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -47.98 11.29 21.44 0.24 -47.74 16 9 Si 0.97 40.23 29.54 68.60 2.03 42.26 16 10 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.65 -27.14 5.13 -445.00 -2.28 -29.42 16 14 C 0.52 21.37 7.25 179.31 1.30 22.67 16 15 N -0.58 -23.26 11.39 -306.52 -3.49 -26.75 16 16 C 0.05 1.89 7.23 39.29 0.28 2.17 16 17 C -0.07 -1.93 9.83 22.49 0.22 -1.71 16 18 C -0.08 -1.83 6.22 22.29 0.14 -1.69 16 19 Br -0.02 -0.43 33.68 -20.37 -0.69 -1.12 16 20 C -0.09 -1.75 9.76 22.33 0.22 -1.53 16 21 C -0.07 -1.69 10.06 22.29 0.22 -1.46 16 22 C -0.03 -1.07 7.42 22.84 0.17 -0.90 16 23 O -0.24 -9.52 7.96 -14.27 -0.11 -9.63 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.70 7.87 -2.39 -0.02 1.68 16 26 H 0.03 1.20 5.62 -2.39 -0.01 1.18 16 27 H 0.08 4.23 5.95 -2.39 -0.01 4.21 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.43 16.48 8.66 -92.71 -0.80 15.68 16 31 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -56.43 300.80 0.16 -56.27 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.35 Total: 20.97 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.11 Total: -4.83 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -5.53 Total: -103.91 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.11 Total: -9.63 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.69 Total: -1.12 kcal Total: -56.43 0.16 -56.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893186708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.806 kcal (2) G-P(sol) polarization free energy of solvation -56.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds