Wall clock time and date at job start Tue Mar 31 2020 14:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99880 * 2 1 4 4 H 1.48503 * 109.46923 * 269.99611 * 3 2 1 5 5 H 1.48500 * 109.47163 * 29.99387 * 3 2 1 6 6 H 1.48498 * 109.47089 * 149.99818 * 3 2 1 7 7 C 1.37877 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.39678 * 119.99717 * 179.97438 * 10 9 7 12 12 C 1.38905 * 120.06718 * 5.75635 * 11 10 9 13 13 C 1.38198 * 119.91315 * 180.02562 * 12 11 10 14 14 Cl 1.73605 * 119.97614 * 179.97438 * 13 12 11 15 15 C 1.38427 * 120.04672 * 359.97166 * 13 12 11 16 16 C 1.50695 * 119.93143 * 180.28344 * 15 13 12 17 17 F 1.39897 * 109.47503 * 179.72173 * 16 15 13 18 18 F 1.39907 * 109.47338 * 299.72373 * 16 15 13 19 19 F 1.39908 * 109.47572 * 59.72196 * 16 15 13 20 20 C 1.38243 * 120.13687 * 0.02562 * 15 13 12 21 21 C 1.38133 * 120.08566 * 0.02562 * 20 15 13 22 22 N 1.48007 * 120.02207 * 179.97438 * 21 20 15 23 23 O 1.21793 * 119.99995 * 353.88211 * 22 21 20 24 24 O 1.21802 * 120.00096 * 173.88931 * 22 21 20 25 25 H 0.97000 * 120.00004 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46933 * 59.99652 * 9 7 2 27 27 H 1.09003 * 109.46912 * 299.99755 * 9 7 2 28 28 H 0.96997 * 120.00133 * 359.97438 * 10 9 7 29 29 H 1.08003 * 120.04594 * 0.04390 * 12 11 10 30 30 H 1.07997 * 119.95704 * 180.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7376 -4.9295 0.0011 12 6 0.3779 -5.1870 -0.1190 13 6 -0.0793 -6.4912 -0.1175 14 17 -1.7783 -6.8149 -0.2668 15 6 0.8166 -7.5396 0.0028 16 6 0.3158 -8.9609 -0.0024 17 9 1.3988 -9.8374 0.1245 18 9 -0.5645 -9.1491 1.0686 19 9 -0.3519 -9.2158 -1.2051 20 6 2.1702 -7.2856 0.1223 21 6 2.6332 -5.9842 0.1226 22 7 4.0827 -5.7138 0.2512 23 8 4.8560 -6.6294 0.4684 24 8 4.5022 -4.5758 0.1400 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 3.1568 -3.4353 0.0002 29 1 -0.3211 -4.3691 -0.2136 30 1 2.8666 -8.1057 0.2156 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912728255.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:09 Heat of formation + Delta-G solvation = -131.378973 kcal Electronic energy + Delta-G solvation = -24999.125097 eV Core-core repulsion = 20408.834962 eV Total energy + Delta-G solvation = -4590.290135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.027 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.24529 -47.78714 -47.66802 -42.14249 -39.81632 -37.16507 -36.67427 -35.65027 -33.13434 -31.90274 -30.91125 -27.64456 -26.56702 -25.12397 -23.81442 -22.33051 -21.66362 -19.60119 -18.90943 -18.57451 -18.32930 -17.89710 -17.48746 -17.42390 -16.42725 -15.96235 -14.90139 -14.79115 -14.73146 -14.36575 -14.24885 -14.21586 -14.12424 -13.85130 -13.83834 -13.77813 -13.14809 -12.73372 -12.44333 -12.02999 -11.96867 -11.39747 -11.30693 -11.15192 -11.09997 -11.06284 -10.91681 -10.44165 -10.39388 -9.72593 -9.53016 -8.85584 -7.75639 -6.46148 -4.54031 -0.10091 0.73262 1.27580 1.42967 1.63615 2.53635 2.96717 3.11965 3.18954 3.21571 3.41054 3.63626 3.83586 4.15827 4.22972 4.29256 4.57955 4.71245 4.92561 5.16916 5.19852 5.38654 5.49669 5.92796 6.46276 6.48147 6.86500 7.12229 7.50017 7.56367 7.74816 8.05102 8.52050 9.14505 10.63970 Molecular weight = 324.03amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.004037 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.066052 B = 6934.845744 C = 8494.741220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.227 3.773 10 N -0.656 5.656 11 C 0.319 3.681 12 C -0.187 4.187 13 C 0.094 3.906 14 Cl -0.030 7.030 15 C -0.271 4.271 16 C 0.524 3.476 17 F -0.176 7.176 18 F -0.172 7.172 19 F -0.172 7.172 20 C 0.060 3.940 21 C -0.153 4.153 22 N 0.058 4.942 23 O -0.167 6.167 24 O -0.193 6.193 25 H 0.270 0.730 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.422 0.578 29 H 0.170 0.830 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.594 -15.026 -0.341 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.089 0.911 9 C 0.107 3.893 10 N -0.280 5.280 11 C 0.191 3.809 12 C -0.210 4.210 13 C 0.065 3.935 14 Cl -0.001 7.001 15 C -0.277 4.277 16 C 0.469 3.531 17 F -0.158 7.158 18 F -0.153 7.153 19 F -0.153 7.153 20 C 0.041 3.959 21 C -0.245 4.245 22 N 0.566 4.434 23 O -0.381 6.381 24 O -0.392 6.392 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.271 0.729 29 H 0.187 0.813 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.579 -14.671 -0.414 14.902 hybrid contribution 0.775 0.813 0.009 1.124 sum -1.804 -13.858 -0.405 13.981 Atomic orbital electron populations 1.69914 1.06150 1.28013 1.48212 1.24911 0.95003 0.99700 0.93940 0.86301 0.79766 0.81813 0.78551 1.20173 1.20805 1.19387 1.21084 0.93803 0.89489 1.54353 0.91141 1.19722 0.88807 0.82560 0.98210 1.47419 1.14488 1.01881 1.64244 1.17722 0.91430 0.85651 0.86127 1.20651 0.93659 0.96024 1.10689 1.20469 0.86001 0.93204 0.93865 1.98435 1.10938 1.95512 1.95200 1.19102 0.93560 0.91620 1.23401 1.17752 0.75350 0.85764 0.74215 1.93167 1.55080 1.71783 1.95736 1.93237 1.69843 1.95923 1.56275 1.93236 1.81161 1.95004 1.45907 1.20301 0.94082 0.95230 0.86319 1.20203 0.79946 0.94834 1.29538 1.43195 1.02743 1.00278 0.97158 1.94498 1.53361 1.38123 1.52144 1.94253 1.80667 1.07523 1.56782 0.92036 0.94258 0.94248 0.72901 0.81300 0.81545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 13.29 55.43 0.74 -22.54 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -13.60 9.28 -34.44 -0.32 -13.92 16 8 H 0.07 1.72 7.60 -52.49 -0.40 1.32 16 9 C 0.23 4.99 4.71 -5.19 -0.02 4.96 16 10 N -0.66 -12.44 5.60 -59.81 -0.34 -12.77 16 11 C 0.32 5.23 6.63 -83.79 -0.56 4.68 16 12 C -0.19 -2.77 9.10 -39.35 -0.36 -3.12 16 13 C 0.09 1.26 6.25 -39.53 -0.25 1.02 16 14 Cl -0.03 -0.38 26.58 -51.86 -1.38 -1.75 16 15 C -0.27 -3.46 5.38 -104.55 -0.56 -4.02 16 16 C 0.52 6.26 2.86 36.00 0.10 6.36 16 17 F -0.18 -2.00 15.96 2.25 0.04 -1.97 16 18 F -0.17 -2.09 16.39 2.25 0.04 -2.05 16 19 F -0.17 -2.09 16.37 2.25 0.04 -2.05 16 20 C 0.06 0.78 8.93 -39.62 -0.35 0.43 16 21 C -0.15 -2.35 6.86 -79.75 -0.55 -2.90 16 22 N 0.06 0.98 4.45 34.06 0.15 1.13 16 23 O -0.17 -2.73 18.46 -29.46 -0.54 -3.27 16 24 O -0.19 -3.52 15.71 -29.46 -0.46 -3.99 16 25 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 26 H 0.04 0.89 7.73 -51.93 -0.40 0.49 16 27 H 0.04 0.91 8.13 -51.93 -0.42 0.48 16 28 H 0.42 8.16 4.76 -41.20 -0.20 7.97 16 29 H 0.17 2.53 6.73 -52.48 -0.35 2.18 16 30 H 0.17 1.85 6.71 -52.49 -0.35 1.49 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -24.79 299.12 -6.46 -31.25 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -1.26 Total: 3.77 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.96 Total: -4.86 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.55 Total: -34.19 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -1.01 Total: -7.26 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.11 Total: -6.07 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.38 Total: -1.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -24.79 -6.46 -31.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912728255.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.128 kcal (2) G-P(sol) polarization free energy of solvation -24.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds