Wall clock time and date at job start Tue Mar 31 2020 14:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21294 * 119.99897 * 2 1 4 4 N 1.34777 * 119.99628 * 179.97438 * 2 1 3 5 5 C 1.46538 * 124.99722 * 5.71354 * 4 2 1 6 6 C 1.53745 * 105.16418 * 179.80330 * 5 4 2 7 7 C 1.51236 * 104.58740 * 0.33058 * 6 5 4 8 8 C 1.38339 * 130.89803 * 179.97438 * 7 6 5 9 9 C 1.38371 * 120.32951 * 179.67190 * 8 7 6 10 10 Br 1.89096 * 120.04940 * 179.97438 * 9 8 7 11 11 C 1.38227 * 119.89925 * 0.02562 * 9 8 7 12 12 C 1.38651 * 120.10828 * 359.97438 * 11 9 8 13 13 N 1.39342 * 119.93946 * 180.02562 * 12 11 9 14 14 C 1.36814 * 119.99916 * 273.87014 * 13 12 11 15 15 H 1.07998 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.38760 * 119.99877 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47264 * 59.99741 * 18 16 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47210 * 299.99512 * 18 16 14 22 22 C 1.38340 * 108.57325 * 359.65702 * 7 6 5 23 23 H 1.09000 * 109.46992 * 270.00180 * 1 2 3 24 24 H 1.08996 * 109.46663 * 30.00303 * 1 2 3 25 25 H 1.08999 * 109.47073 * 150.00068 * 1 2 3 26 26 H 1.09006 * 110.30732 * 298.93785 * 5 4 2 27 27 H 1.08999 * 110.30608 * 61.09968 * 5 4 2 28 28 H 1.09003 * 110.70116 * 241.41040 * 6 5 4 29 29 H 1.08992 * 110.11944 * 118.96407 * 6 5 4 30 30 H 1.07999 * 119.83289 * 359.68891 * 8 7 6 31 31 H 1.07998 * 119.94097 * 180.02562 * 11 9 8 32 32 H 0.97004 * 119.99763 * 93.86851 * 13 12 11 33 33 H 0.96998 * 119.99907 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5666 -2.4923 -0.1184 6 6 2.7396 -3.4851 -0.0711 7 6 3.9678 -2.6164 0.0843 8 6 5.3066 -2.9502 0.1831 9 6 6.2655 -1.9613 0.3147 10 35 8.0933 -2.4265 0.4498 11 6 5.8850 -0.6328 0.3482 12 6 4.5451 -0.2904 0.2497 13 7 4.1656 1.0500 0.2834 14 6 3.9546 1.6712 1.4839 15 1 4.0817 1.1227 2.4055 16 6 3.5761 3.0058 1.5174 17 7 3.4206 3.6741 0.3943 18 14 3.2873 3.8538 3.1566 19 1 4.5350 3.8144 3.9609 20 1 2.8954 5.2667 2.9207 21 1 2.2025 3.1549 3.8912 22 6 3.5696 -1.2919 0.1151 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 0.8838 -2.6688 0.7128 27 1 1.0387 -2.5807 -1.0679 28 1 2.7952 -4.0602 -0.9954 29 1 2.6335 -4.1502 0.7858 30 1 5.6050 -3.9879 0.1572 31 1 6.6329 0.1396 0.4504 32 1 4.0510 1.5425 -0.5444 33 1 3.1564 4.6071 0.4177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:19 Heat of formation + Delta-G solvation = 51.034646 kcal Electronic energy + Delta-G solvation = -19998.473070 eV Core-core repulsion = 16879.355132 eV Total energy + Delta-G solvation = -3119.117938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.54958 -37.82707 -36.26196 -34.30087 -31.83581 -31.45339 -29.93502 -29.42423 -28.12612 -27.23309 -24.01196 -23.03679 -21.62645 -20.66913 -18.64241 -17.27863 -16.72570 -15.91380 -15.86997 -15.35365 -14.43871 -14.18885 -14.02461 -13.79784 -13.30251 -13.02206 -12.45145 -12.38734 -12.24602 -12.06481 -11.98107 -11.47663 -11.43280 -11.20123 -10.81639 -10.76662 -10.55161 -10.18998 -9.95200 -9.69170 -9.51846 -9.21217 -8.44972 -8.08495 -7.07052 -6.69858 -5.68931 -2.95462 1.67413 1.87434 2.09110 3.36147 3.42416 3.46912 3.49471 3.50595 4.22095 4.63312 4.70059 4.73997 5.13783 5.16976 5.33663 5.49985 5.53366 5.60130 5.71834 5.76393 5.78543 5.86290 5.94127 6.09451 6.12755 6.47387 6.55705 6.70492 6.89404 7.24236 7.40711 7.77259 8.06103 8.50731 9.02420 9.57924 10.26291 10.44188 11.51966 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.005897 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.022690 B = 4747.354853 C = 6545.146575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.459 3.541 3 O -0.390 6.390 4 N -0.558 5.558 5 C 0.104 3.896 6 C -0.078 4.078 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.112 4.112 10 Br -0.078 7.078 11 C -0.082 4.082 12 C 0.191 3.809 13 N -0.650 5.650 14 C -0.223 4.223 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.908 5.908 18 Si 0.900 3.100 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.149 3.851 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.132 0.868 32 H 0.398 0.602 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -16.627 -2.412 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.245 3.755 3 O -0.253 6.253 4 N -0.286 5.286 5 C -0.019 4.019 6 C -0.115 4.115 7 C -0.157 4.157 8 C -0.095 4.095 9 C -0.193 4.193 10 Br 0.007 6.993 11 C -0.105 4.105 12 C 0.089 3.911 13 N -0.288 5.288 14 C -0.353 4.353 15 H 0.081 0.919 16 C -0.189 4.189 17 N -0.553 5.553 18 Si 0.731 3.269 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.048 3.952 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.237 0.763 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.441 -15.826 -2.222 15.987 hybrid contribution -0.825 0.567 0.705 1.224 sum -0.384 -15.259 -1.517 15.339 Atomic orbital electron populations 1.21834 0.92631 1.03664 1.03869 1.20862 0.90125 0.83918 0.80561 1.91413 1.66891 1.28481 1.38530 1.46159 1.04340 1.06696 1.71356 1.21994 0.96203 0.82034 1.01679 1.20982 0.90801 0.96898 1.02832 1.19736 0.93735 0.93331 1.08871 1.19922 0.90036 0.97975 1.01577 1.21303 0.88985 0.95585 1.13451 1.96558 1.11581 1.93488 1.97670 1.21627 0.96607 0.93720 0.98570 1.17184 0.89177 0.87551 0.97233 1.39894 1.78120 1.03489 1.07322 1.18844 1.38891 0.93044 0.84508 0.91920 1.24605 1.01441 0.96627 0.96247 1.69656 1.52037 1.09085 1.24558 0.86405 0.77984 0.78735 0.83777 1.21237 1.21645 1.21512 1.20024 0.84088 0.94179 0.96934 0.89769 0.89323 0.91462 0.90801 0.90901 0.89800 0.89873 0.86077 0.85013 0.76251 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.94 36.01 0.36 -1.90 16 2 C 0.46 9.00 7.89 -10.98 -0.09 8.91 16 3 O -0.39 -9.82 10.46 5.55 0.06 -9.76 16 4 N -0.56 -9.81 3.13 -112.68 -0.35 -10.16 16 5 C 0.10 1.24 6.21 -3.63 -0.02 1.21 16 6 C -0.08 -0.88 6.94 -27.23 -0.19 -1.07 16 7 C -0.15 -2.40 6.23 -104.28 -0.65 -3.05 16 8 C -0.07 -1.14 9.78 -39.50 -0.39 -1.53 16 9 C -0.11 -1.92 6.22 -39.54 -0.25 -2.17 16 10 Br -0.08 -1.14 33.70 -68.01 -2.29 -3.43 16 11 C -0.08 -1.65 9.69 -39.43 -0.38 -2.03 16 12 C 0.19 4.26 5.89 -83.46 -0.49 3.77 16 13 N -0.65 -16.95 2.84 -9.38 -0.03 -16.97 16 14 C -0.22 -6.31 8.24 -15.14 -0.12 -6.43 16 15 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.01 0.25 5.01 -17.45 -0.09 0.16 16 17 N -0.91 -27.41 12.75 55.49 0.71 -26.70 16 18 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.15 2.89 6.64 -83.30 -0.55 2.34 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.07 0.71 7.07 -51.93 -0.37 0.35 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 32 H 0.40 11.26 7.11 -40.82 -0.29 10.97 16 33 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -32.11 297.53 -8.88 -40.99 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.58 Total: 5.58 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.86 Total: -1.77 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.33 Total: -53.84 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.06 Total: -9.76 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 35 Polarization: -1.14 SS G_CDS: -2.29 Total: -3.43 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.11 -8.88 -40.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.027 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds