Wall clock time and date at job start Tue Mar 31 2020 14:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21294 * 119.99897 * 2 1 4 4 N 1.34777 * 119.99628 * 179.97438 * 2 1 3 5 5 C 1.46538 * 124.99722 * 5.71354 * 4 2 1 6 6 C 1.53745 * 105.16418 * 179.80330 * 5 4 2 7 7 C 1.51236 * 104.58740 * 0.33058 * 6 5 4 8 8 C 1.38339 * 130.89803 * 179.97438 * 7 6 5 9 9 C 1.38371 * 120.32951 * 179.67190 * 8 7 6 10 10 Br 1.89096 * 120.04940 * 179.97438 * 9 8 7 11 11 C 1.38227 * 119.89925 * 0.02562 * 9 8 7 12 12 C 1.38651 * 120.10828 * 359.97438 * 11 9 8 13 13 N 1.39342 * 119.93946 * 180.02562 * 12 11 9 14 14 C 1.36814 * 119.99916 * 273.87014 * 13 12 11 15 15 H 1.07998 * 120.00090 * 359.97438 * 14 13 12 16 16 C 1.38760 * 119.99877 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99910 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99961 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47264 * 59.99741 * 18 16 14 20 20 H 1.48506 * 109.47165 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47210 * 299.99512 * 18 16 14 22 22 C 1.38340 * 108.57325 * 359.65702 * 7 6 5 23 23 H 1.09000 * 109.46992 * 270.00180 * 1 2 3 24 24 H 1.08996 * 109.46663 * 30.00303 * 1 2 3 25 25 H 1.08999 * 109.47073 * 150.00068 * 1 2 3 26 26 H 1.09006 * 110.30732 * 298.93785 * 5 4 2 27 27 H 1.08999 * 110.30608 * 61.09968 * 5 4 2 28 28 H 1.09003 * 110.70116 * 241.41040 * 6 5 4 29 29 H 1.08992 * 110.11944 * 118.96407 * 6 5 4 30 30 H 1.07999 * 119.83289 * 359.68891 * 8 7 6 31 31 H 1.07998 * 119.94097 * 180.02562 * 11 9 8 32 32 H 0.97004 * 119.99763 * 93.86851 * 13 12 11 33 33 H 0.96998 * 119.99907 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5666 -2.4923 -0.1184 6 6 2.7396 -3.4851 -0.0711 7 6 3.9678 -2.6164 0.0843 8 6 5.3066 -2.9502 0.1831 9 6 6.2655 -1.9613 0.3147 10 35 8.0933 -2.4265 0.4498 11 6 5.8850 -0.6328 0.3482 12 6 4.5451 -0.2904 0.2497 13 7 4.1656 1.0500 0.2834 14 6 3.9546 1.6712 1.4839 15 1 4.0817 1.1227 2.4055 16 6 3.5761 3.0058 1.5174 17 7 3.4206 3.6741 0.3943 18 14 3.2873 3.8538 3.1566 19 1 4.5350 3.8144 3.9609 20 1 2.8954 5.2667 2.9207 21 1 2.2025 3.1549 3.8912 22 6 3.5696 -1.2919 0.1151 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 0.8838 -2.6688 0.7128 27 1 1.0387 -2.5807 -1.0679 28 1 2.7952 -4.0602 -0.9954 29 1 2.6335 -4.1502 0.7858 30 1 5.6050 -3.9879 0.1572 31 1 6.6329 0.1396 0.4504 32 1 4.0510 1.5425 -0.5444 33 1 3.1564 4.6071 0.4177 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:18 Heat of formation + Delta-G solvation = 30.858145 kcal Electronic energy + Delta-G solvation = -19999.347989 eV Core-core repulsion = 16879.355132 eV Total energy + Delta-G solvation = -3119.992856 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.89335 -39.30596 -37.72690 -36.01451 -33.52212 -32.91869 -31.36564 -30.69811 -29.51911 -28.64883 -25.98211 -24.17070 -23.09830 -22.00927 -20.03559 -19.30040 -18.21209 -17.25484 -17.03490 -16.99277 -16.03943 -15.55616 -15.55275 -15.25545 -15.20881 -14.46132 -13.75425 -13.64720 -13.44172 -13.23387 -13.15369 -13.06309 -12.83591 -12.55644 -12.53226 -12.37062 -12.27394 -11.90627 -11.75695 -11.27090 -11.14217 -10.52750 -10.32340 -9.50542 -8.73143 -8.38573 -7.81477 -5.09464 0.23743 0.45429 0.74741 1.39848 1.42763 1.48513 2.00224 2.13869 2.56433 2.84045 3.48084 3.56796 3.74395 3.85305 4.10864 4.28799 4.32280 4.33563 4.48084 4.52194 4.67441 4.72334 4.87678 5.04782 5.08198 5.14999 5.22855 5.28451 5.43849 5.54792 5.77827 5.99917 6.40757 6.71492 7.40975 7.60857 8.27437 8.38918 9.40443 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.005897 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.022690 B = 4747.354853 C = 6545.146575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.449 3.551 3 O -0.462 6.462 4 N -0.564 5.564 5 C 0.094 3.906 6 C -0.070 4.070 7 C -0.138 4.138 8 C -0.060 4.060 9 C -0.115 4.115 10 Br -0.051 7.051 11 C -0.098 4.098 12 C 0.145 3.855 13 N -0.658 5.658 14 C -0.212 4.212 15 H 0.050 0.950 16 C -0.049 4.049 17 N -0.946 5.946 18 Si 0.956 3.044 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.285 1.285 22 C 0.124 3.876 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.111 0.889 32 H 0.379 0.621 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -21.018 -2.158 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.237 3.763 3 O -0.329 6.329 4 N -0.290 5.290 5 C -0.026 4.026 6 C -0.107 4.107 7 C -0.143 4.143 8 C -0.080 4.080 9 C -0.196 4.196 10 Br 0.034 6.966 11 C -0.121 4.121 12 C 0.044 3.956 13 N -0.295 5.295 14 C -0.342 4.342 15 H 0.068 0.932 16 C -0.243 4.243 17 N -0.595 5.595 18 Si 0.786 3.214 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.212 1.212 22 C 0.024 3.976 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.179 0.821 31 H 0.129 0.871 32 H 0.215 0.785 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.612 -20.345 -1.950 20.448 hybrid contribution -0.422 1.598 0.578 1.751 sum -1.034 -18.747 -1.372 18.826 Atomic orbital electron populations 1.21796 0.88390 1.05450 1.05096 1.21949 0.92281 0.83631 0.78434 1.91408 1.68728 1.31013 1.41796 1.46379 1.03827 1.08487 1.70319 1.22474 0.96895 0.78893 1.04371 1.21190 0.87412 0.96390 1.05739 1.20314 0.95439 0.92634 1.05870 1.20397 0.89504 0.99295 0.98815 1.21440 0.91008 0.94693 1.12478 1.96575 1.09493 1.92948 1.97575 1.21433 0.95594 0.94987 1.00091 1.17599 0.90596 0.86694 1.00674 1.39670 1.79168 1.05076 1.05579 1.18874 1.37485 0.92951 0.84904 0.93228 1.25213 1.02707 0.97389 0.98943 1.69824 1.54792 1.08644 1.26240 0.85498 0.77856 0.77490 0.80526 1.20766 1.21882 1.21193 1.20094 0.85137 0.95075 0.97301 0.88607 0.90166 0.87038 0.88276 0.88032 0.86576 0.86945 0.82134 0.87074 0.78457 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.94 71.24 0.71 -3.18 16 2 C 0.45 17.60 7.89 87.66 0.69 18.29 16 3 O -0.46 -24.44 10.46 -3.07 -0.03 -24.48 16 4 N -0.56 -18.83 3.13 -628.80 -1.97 -20.80 16 5 C 0.09 1.77 6.21 86.62 0.54 2.31 16 6 C -0.07 -1.17 6.94 30.27 0.21 -0.96 16 7 C -0.14 -3.86 6.23 -19.65 -0.12 -3.99 16 8 C -0.06 -1.63 9.78 22.33 0.22 -1.41 16 9 C -0.12 -3.78 6.22 22.30 0.14 -3.64 16 10 Br -0.05 -1.40 33.70 -20.37 -0.69 -2.09 16 11 C -0.10 -4.07 9.69 22.37 0.22 -3.85 16 12 C 0.14 6.70 5.89 38.59 0.23 6.93 16 13 N -0.66 -36.61 2.84 -183.58 -0.52 -37.13 16 14 C -0.21 -12.64 8.24 84.04 0.69 -11.95 16 15 H 0.05 2.99 7.83 -2.91 -0.02 2.97 16 16 C -0.05 -2.97 5.01 84.85 0.43 -2.55 16 17 N -0.95 -60.78 12.75 21.64 0.28 -60.51 16 18 Si 0.96 48.97 29.55 68.60 2.03 51.00 16 19 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 21 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 22 C 0.12 4.74 6.64 38.42 0.26 5.00 16 23 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.11 1.88 7.07 -2.39 -0.02 1.87 16 26 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.10 1.37 7.96 -2.39 -0.02 1.35 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 32 H 0.38 23.29 7.11 -92.71 -0.66 22.64 16 33 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.82 297.53 3.78 -74.03 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.49 Total: 18.97 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 4.20 Total: 1.00 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -2.21 Total: -118.44 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.03 Total: -24.48 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -0.69 Total: -2.09 kcal Total: -77.82 3.78 -74.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.892 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds