Wall clock time and date at job start Tue Mar 31 2020 13:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47200 * 264.59327 * 3 2 1 5 5 H 1.48506 * 109.46934 * 24.58775 * 3 2 1 6 6 H 1.48498 * 109.47080 * 144.58779 * 3 2 1 7 7 C 1.37872 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00134 * 352.66982 * 7 2 1 9 9 C 1.50701 * 120.00098 * 172.94708 * 7 2 1 10 10 H 1.08998 * 109.47133 * 27.57241 * 9 7 2 11 11 O 1.42898 * 109.47375 * 147.56992 * 9 7 2 12 12 C 1.35450 * 117.00369 * 270.00121 * 11 9 7 13 13 N 1.32313 * 119.17830 * 359.72891 * 12 11 9 14 14 C 1.32454 * 120.77137 * 179.75926 * 13 12 11 15 15 Cl 1.73597 * 120.42480 * 180.27902 * 14 13 12 16 16 C 1.38707 * 119.15969 * 0.50404 * 14 13 12 17 17 C 1.38694 * 118.49428 * 359.75074 * 16 14 13 18 18 Cl 1.73602 * 120.41716 * 179.97438 * 17 16 14 19 19 N 1.32310 * 119.18422 * 179.97438 * 12 11 9 20 20 C 1.50706 * 109.47168 * 267.57652 * 9 7 2 21 21 C 1.38235 * 119.99471 * 278.93851 * 20 9 7 22 22 C 1.38236 * 119.99762 * 179.81350 * 21 20 9 23 23 C 1.38234 * 120.00030 * 0.39012 * 22 21 20 24 24 C 1.38237 * 119.99840 * 359.86660 * 23 22 21 25 25 C 1.38230 * 120.00061 * 99.21070 * 20 9 7 26 26 H 0.96999 * 120.00126 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.74928 * 179.72851 * 16 14 13 28 28 H 1.07997 * 120.00139 * 359.97438 * 21 20 9 29 29 H 1.08004 * 120.00055 * 180.23280 * 22 21 20 30 30 H 1.07999 * 120.00022 * 179.83631 * 23 22 21 31 31 H 1.08004 * 120.00154 * 179.97438 * 24 23 22 32 32 H 1.08000 * 120.00337 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6109 1.9805 -1.3939 5 1 1.3940 2.6830 0.5826 6 1 3.4848 1.4759 0.8113 7 6 2.0046 -1.1940 -0.0005 8 1 1.4712 -2.1255 0.1184 9 6 3.5030 -1.1989 -0.1608 10 1 3.9119 -0.2618 0.2171 11 8 4.0573 -2.2914 0.5749 12 6 4.4020 -2.0535 1.8630 13 7 4.2181 -0.8441 2.3672 14 6 4.5395 -0.5779 3.6243 15 17 4.2877 1.0102 4.2787 16 6 5.0843 -1.5829 4.4099 17 6 5.2677 -2.8370 3.8467 18 17 5.9461 -4.1309 4.7844 19 7 4.9187 -3.0349 2.5844 20 6 3.8518 -1.3470 -1.6194 21 6 3.8399 -2.5971 -2.2093 22 6 4.1561 -2.7325 -3.5482 23 6 4.4919 -1.6189 -4.2952 24 6 4.5089 -0.3695 -3.7039 25 6 4.1889 -0.2335 -2.3660 26 1 -0.4850 0.8400 0.0004 27 1 5.3598 -1.3930 5.4368 28 1 3.5812 -3.4676 -1.6248 29 1 4.1432 -3.7088 -4.0101 30 1 4.7414 -1.7251 -5.3406 31 1 4.7716 0.5005 -4.2874 32 1 4.2021 0.7426 -1.9041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227946099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:26 Heat of formation + Delta-G solvation = 40.110011 kcal Electronic energy + Delta-G solvation = -22125.168405 eV Core-core repulsion = 18524.880496 eV Total energy + Delta-G solvation = -3600.287909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 324.017 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08710 -38.96041 -37.63554 -37.08939 -36.63483 -33.54385 -33.16275 -31.64746 -30.77281 -30.30410 -27.47902 -24.59643 -24.22530 -22.87095 -22.02838 -20.55600 -18.48839 -18.13330 -17.41696 -16.29862 -16.20890 -15.74244 -15.26933 -14.92166 -14.69743 -14.35116 -14.07193 -13.51445 -13.15427 -12.94777 -12.89217 -12.74499 -12.27272 -11.90046 -11.75319 -11.52135 -11.33372 -11.11223 -11.04406 -10.89301 -10.46938 -10.22429 -10.19483 -9.84559 -9.72241 -9.23521 -8.85393 -8.71764 -8.34592 -8.02539 -6.37310 -4.42416 0.80138 0.91297 1.16649 1.76423 1.93995 1.98707 3.08859 3.13996 3.23836 3.30895 3.69838 4.20113 4.26733 4.41502 4.60136 4.91478 4.96811 5.14461 5.42266 5.44869 5.53638 5.66433 5.84417 6.09235 6.16340 6.34461 6.53562 6.57901 6.67647 6.99910 7.04019 7.14708 7.25012 7.52984 7.58320 8.04698 8.23292 8.69158 9.20719 10.73130 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.005324 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.202116 B = 5257.503121 C = 6736.331218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.095 3.905 3 Si 0.851 3.149 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.526 4.526 8 H 0.086 0.914 9 C 0.211 3.789 10 H 0.074 0.926 11 O -0.274 6.274 12 C 0.568 3.432 13 N -0.537 5.537 14 C 0.275 3.725 15 Cl -0.007 7.007 16 C -0.257 4.257 17 C 0.272 3.728 18 Cl -0.004 7.004 19 N -0.528 5.528 20 C -0.044 4.044 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.121 4.121 25 C -0.126 4.126 26 H 0.271 0.729 27 H 0.164 0.836 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 -1.017 5.543 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.112 4.112 3 Si 0.676 3.324 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.163 1.163 7 C -0.562 4.562 8 H 0.104 0.896 9 C 0.157 3.843 10 H 0.091 0.909 11 O -0.173 6.173 12 C 0.268 3.732 13 N -0.270 5.270 14 C 0.100 3.900 15 Cl 0.022 6.978 16 C -0.283 4.283 17 C 0.097 3.903 18 Cl 0.024 6.976 19 N -0.258 5.258 20 C -0.045 4.045 21 C -0.116 4.116 22 C -0.141 4.141 23 C -0.159 4.159 24 C -0.139 4.139 25 C -0.144 4.144 26 H 0.081 0.919 27 H 0.182 0.818 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.265 -1.272 4.404 12.162 hybrid contribution 0.203 1.271 0.893 1.567 sum 11.469 -0.001 5.297 12.633 Atomic orbital electron populations 1.69868 1.06342 1.27829 1.46690 1.24855 0.94713 0.98894 0.92707 0.87232 0.81969 0.83592 0.79582 1.19205 1.20821 1.16268 1.21000 0.87722 0.95853 1.51667 0.89646 1.19795 0.95035 0.85519 0.83967 0.90875 1.86152 1.73153 1.42549 1.15455 1.20219 0.84230 0.81466 0.87240 1.67632 1.22972 1.22737 1.13653 1.21580 0.90762 0.88453 0.89205 1.98434 1.94558 1.21835 1.82988 1.21968 1.10511 0.91935 1.03865 1.21432 0.91731 0.88360 0.88775 1.98428 1.81857 1.49039 1.68254 1.66866 1.18507 1.34332 1.06078 1.20100 0.94655 0.93471 0.96262 1.20948 0.98802 0.97422 0.94450 1.21064 1.00504 0.98206 0.94328 1.20939 1.02725 0.92964 0.99233 1.20926 1.01111 0.97168 0.94654 1.20909 1.00781 0.98058 0.94631 0.91885 0.81836 0.85905 0.86686 0.86899 0.86729 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.96 55.43 0.77 -24.74 16 2 C 0.10 2.63 5.47 -17.82 -0.10 2.53 16 3 Si 0.85 20.21 25.39 -169.99 -4.32 15.90 16 4 H -0.27 -6.06 6.43 56.52 0.36 -5.70 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.43 6.36 56.52 0.36 -5.07 16 7 C -0.53 -14.35 9.17 -34.44 -0.32 -14.66 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.21 4.99 1.78 -29.03 -0.05 4.94 16 10 H 0.07 1.75 3.77 -51.93 -0.20 1.55 16 11 O -0.27 -6.28 9.11 -18.04 -0.16 -6.44 16 12 C 0.57 11.99 8.45 -91.26 -0.77 11.22 16 13 N -0.54 -11.06 8.65 -11.84 -0.10 -11.16 16 14 C 0.28 4.60 7.33 -17.11 -0.13 4.47 16 15 Cl -0.01 -0.10 29.15 -51.86 -1.51 -1.61 16 16 C -0.26 -3.54 9.78 -39.24 -0.38 -3.92 16 17 C 0.27 4.14 7.33 -17.11 -0.13 4.01 16 18 Cl 0.00 -0.05 29.15 -51.86 -1.51 -1.56 16 19 N -0.53 -9.95 10.46 -11.84 -0.12 -10.08 16 20 C -0.04 -0.96 4.96 -104.62 -0.52 -1.48 16 21 C -0.10 -1.96 9.36 -39.58 -0.37 -2.33 16 22 C -0.12 -2.09 10.05 -39.58 -0.40 -2.48 16 23 C -0.14 -2.25 10.05 -39.58 -0.40 -2.65 16 24 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 25 C -0.13 -2.53 9.16 -39.58 -0.36 -2.89 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.12 2.45 7.75 -52.49 -0.41 2.04 16 29 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.11 2.26 5.71 -52.49 -0.30 1.96 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -29.60 314.54 -8.76 -38.36 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.23 Total: 2.31 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -4.32 Total: -5.72 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.55 Total: -45.98 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.16 Total: -6.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.32 Total: 15.90 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -3.02 Total: -3.17 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.60 -8.76 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227946099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.473 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds