Wall clock time and date at job start Tue Mar 31 2020 13:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47200 * 264.59327 * 3 2 1 5 5 H 1.48506 * 109.46934 * 24.58775 * 3 2 1 6 6 H 1.48498 * 109.47080 * 144.58779 * 3 2 1 7 7 C 1.37872 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00134 * 352.66982 * 7 2 1 9 9 C 1.50701 * 120.00098 * 172.94708 * 7 2 1 10 10 H 1.08998 * 109.47133 * 27.57241 * 9 7 2 11 11 O 1.42898 * 109.47375 * 147.56992 * 9 7 2 12 12 C 1.35450 * 117.00369 * 270.00121 * 11 9 7 13 13 N 1.32313 * 119.17830 * 359.72891 * 12 11 9 14 14 C 1.32454 * 120.77137 * 179.75926 * 13 12 11 15 15 Cl 1.73597 * 120.42480 * 180.27902 * 14 13 12 16 16 C 1.38707 * 119.15969 * 0.50404 * 14 13 12 17 17 C 1.38694 * 118.49428 * 359.75074 * 16 14 13 18 18 Cl 1.73602 * 120.41716 * 179.97438 * 17 16 14 19 19 N 1.32310 * 119.18422 * 179.97438 * 12 11 9 20 20 C 1.50706 * 109.47168 * 267.57652 * 9 7 2 21 21 C 1.38235 * 119.99471 * 278.93851 * 20 9 7 22 22 C 1.38236 * 119.99762 * 179.81350 * 21 20 9 23 23 C 1.38234 * 120.00030 * 0.39012 * 22 21 20 24 24 C 1.38237 * 119.99840 * 359.86660 * 23 22 21 25 25 C 1.38230 * 120.00061 * 99.21070 * 20 9 7 26 26 H 0.96999 * 120.00126 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.74928 * 179.72851 * 16 14 13 28 28 H 1.07997 * 120.00139 * 359.97438 * 21 20 9 29 29 H 1.08004 * 120.00055 * 180.23280 * 22 21 20 30 30 H 1.07999 * 120.00022 * 179.83631 * 23 22 21 31 31 H 1.08004 * 120.00154 * 179.97438 * 24 23 22 32 32 H 1.08000 * 120.00337 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6109 1.9805 -1.3939 5 1 1.3940 2.6830 0.5826 6 1 3.4848 1.4759 0.8113 7 6 2.0046 -1.1940 -0.0005 8 1 1.4712 -2.1255 0.1184 9 6 3.5030 -1.1989 -0.1608 10 1 3.9119 -0.2618 0.2171 11 8 4.0573 -2.2914 0.5749 12 6 4.4020 -2.0535 1.8630 13 7 4.2181 -0.8441 2.3672 14 6 4.5395 -0.5779 3.6243 15 17 4.2877 1.0102 4.2787 16 6 5.0843 -1.5829 4.4099 17 6 5.2677 -2.8370 3.8467 18 17 5.9461 -4.1309 4.7844 19 7 4.9187 -3.0349 2.5844 20 6 3.8518 -1.3470 -1.6194 21 6 3.8399 -2.5971 -2.2093 22 6 4.1561 -2.7325 -3.5482 23 6 4.4919 -1.6189 -4.2952 24 6 4.5089 -0.3695 -3.7039 25 6 4.1889 -0.2335 -2.3660 26 1 -0.4850 0.8400 0.0004 27 1 5.3598 -1.3930 5.4368 28 1 3.5812 -3.4676 -1.6248 29 1 4.1432 -3.7088 -4.0101 30 1 4.7414 -1.7251 -5.3406 31 1 4.7716 0.5005 -4.2874 32 1 4.2021 0.7426 -1.9041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227946099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:25 Heat of formation + Delta-G solvation = 19.986242 kcal Electronic energy + Delta-G solvation = -22126.041037 eV Core-core repulsion = 18524.880496 eV Total energy + Delta-G solvation = -3601.160541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 324.017 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.50274 -40.46961 -39.10610 -38.27156 -37.87051 -35.20961 -34.82959 -33.25476 -32.19155 -31.71187 -29.25334 -26.09571 -25.67005 -24.49979 -23.44786 -22.08322 -19.98104 -19.63638 -19.34060 -17.68008 -17.61749 -17.28676 -16.62163 -16.42089 -16.20812 -15.78387 -15.54836 -15.03165 -14.90172 -14.65072 -14.25929 -14.11889 -13.80744 -13.52362 -13.06149 -12.92069 -12.76747 -12.54318 -12.46382 -12.25596 -12.03320 -11.94076 -11.57716 -11.54883 -11.43104 -10.91136 -10.65257 -10.16149 -9.76432 -9.54421 -8.47905 -6.57456 -0.51659 -0.42360 -0.05810 0.45612 0.54681 0.58017 1.23368 1.30404 1.41977 1.62464 2.22131 2.28977 2.79038 2.95055 3.04901 3.27104 3.68154 3.85767 4.01958 4.14988 4.23950 4.31981 4.44116 4.50965 4.74344 4.79077 5.06770 5.18774 5.20916 5.28982 5.60023 5.64244 5.75901 5.86099 6.13674 6.19958 6.45026 6.69704 7.10746 8.67168 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.005324 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.202116 B = 5257.503121 C = 6736.331218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.047 3.953 3 Si 0.905 3.095 4 H -0.247 1.247 5 H -0.281 1.281 6 H -0.228 1.228 7 C -0.529 4.529 8 H 0.034 0.966 9 C 0.226 3.774 10 H 0.070 0.930 11 O -0.293 6.293 12 C 0.544 3.456 13 N -0.570 5.570 14 C 0.257 3.743 15 Cl 0.012 6.988 16 C -0.224 4.224 17 C 0.263 3.737 18 Cl 0.032 6.968 19 N -0.544 5.544 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.145 4.145 26 H 0.273 0.727 27 H 0.211 0.789 28 H 0.107 0.893 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.263 -0.294 5.200 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.154 4.154 3 Si 0.727 3.273 4 H -0.171 1.171 5 H -0.207 1.207 6 H -0.151 1.151 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.171 3.829 10 H 0.088 0.912 11 O -0.193 6.193 12 C 0.243 3.757 13 N -0.303 5.303 14 C 0.084 3.916 15 Cl 0.041 6.959 16 C -0.249 4.249 17 C 0.089 3.911 18 Cl 0.061 6.939 19 N -0.274 5.274 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.163 4.163 26 H 0.082 0.918 27 H 0.228 0.772 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.176 0.824 31 H 0.168 0.832 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.854 -0.558 4.104 14.459 hybrid contribution -0.472 0.869 1.124 1.497 sum 13.382 0.311 5.228 14.370 Atomic orbital electron populations 1.70000 1.08070 1.28732 1.49346 1.25587 0.95302 1.02277 0.92268 0.86392 0.80986 0.79101 0.80826 1.17121 1.20723 1.15074 1.21027 0.89998 0.93883 1.51654 0.94781 1.19481 0.92347 0.85606 0.85431 0.91206 1.86056 1.73994 1.42300 1.16940 1.20255 0.86028 0.82499 0.86950 1.67518 1.24152 1.22862 1.15793 1.21990 0.91099 0.89941 0.88568 1.98436 1.94468 1.20668 1.82346 1.22415 1.07076 0.90229 1.05140 1.21881 0.91250 0.90028 0.87949 1.98443 1.81067 1.47578 1.66804 1.66860 1.18844 1.34083 1.07651 1.20116 0.97468 0.95082 0.95273 1.21001 1.00218 0.96438 0.96170 1.21444 0.98941 1.00450 0.92888 1.21468 1.00117 0.91824 1.01086 1.21376 0.99502 0.99179 0.93495 1.21071 1.01796 0.97256 0.96172 0.91784 0.77244 0.87502 0.83493 0.82424 0.83152 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 13.96 21.45 0.30 -56.51 16 2 C 0.05 2.73 5.47 84.65 0.46 3.19 16 3 Si 0.90 42.58 25.39 68.60 1.74 44.32 16 4 H -0.25 -10.74 6.43 99.48 0.64 -10.10 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.23 -10.16 6.36 99.48 0.63 -9.53 16 7 C -0.53 -30.74 9.17 25.60 0.23 -30.51 16 8 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 9 C 0.23 11.21 1.78 29.10 0.05 11.26 16 10 H 0.07 3.44 3.77 -2.39 -0.01 3.43 16 11 O -0.29 -14.23 9.11 -87.48 -0.80 -15.02 16 12 C 0.54 23.78 8.45 180.57 1.53 25.31 16 13 N -0.57 -23.85 8.65 -304.32 -2.63 -26.48 16 14 C 0.26 8.36 7.33 84.71 0.62 8.98 16 15 Cl 0.01 0.34 29.15 -2.72 -0.08 0.26 16 16 C -0.22 -5.68 9.78 22.49 0.22 -5.46 16 17 C 0.26 7.64 7.33 84.71 0.62 8.26 16 18 Cl 0.03 0.70 29.15 -2.72 -0.08 0.62 16 19 N -0.54 -20.77 10.46 -304.33 -3.18 -23.95 16 20 C -0.08 -3.53 4.96 -19.86 -0.10 -3.63 16 21 C -0.12 -4.91 9.36 22.27 0.21 -4.70 16 22 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 23 C -0.13 -3.58 10.05 22.27 0.22 -3.35 16 24 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.14 -5.72 9.16 22.27 0.20 -5.51 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.21 3.23 8.06 -2.91 -0.02 3.20 16 28 H 0.11 4.56 7.75 -2.91 -0.02 4.54 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.11 4.29 5.71 -2.91 -0.02 4.28 16 Total: -1.00 -70.20 314.54 1.04 -69.16 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.04 Total: 10.79 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 4.72 Total: -3.19 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -5.52 Total: -106.94 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.80 Total: -15.02 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.74 Total: 44.32 kcal Atomic # 17 Polarization: 1.04 SS G_CDS: -0.16 Total: 0.88 kcal Total: -70.20 1.04 -69.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227946099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.147 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds